Wall clock time and date at job start Tue Mar 31 2020 04:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.35758 * 119.62714 * 269.72688 * 3 2 1 5 5 C 1.35352 * 120.70194 * 179.76327 * 4 3 2 6 6 C 1.40198 * 119.94910 * 0.50916 * 5 4 3 7 7 C 1.36398 * 119.26068 * 359.75175 * 6 5 4 8 8 C 1.50699 * 120.34223 * 180.02562 * 7 6 5 9 9 N 1.46501 * 109.47393 * 94.97478 * 8 7 6 10 10 S 1.65596 * 120.00136 * 164.99337 * 9 8 7 11 11 O 1.42107 * 106.40237 * 178.54129 * 10 9 8 12 12 O 1.42096 * 106.40536 * 311.46531 * 10 9 8 13 13 N 1.65610 * 107.21520 * 65.00659 * 10 9 8 14 14 C 1.46502 * 119.99682 * 269.99550 * 13 10 9 15 15 C 1.46496 * 120.00234 * 89.99887 * 13 10 9 16 16 C 1.50702 * 109.47238 * 94.99684 * 15 13 10 17 17 H 1.08003 * 119.99871 * 0.02562 * 16 15 13 18 18 C 1.37880 * 119.99799 * 180.02562 * 16 15 13 19 19 N 1.31508 * 120.00151 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99591 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47411 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47098 * 120.00217 * 20 18 16 23 23 H 1.48500 * 109.47071 * 239.99708 * 20 18 16 24 24 C 1.34664 * 119.62311 * 90.00106 * 3 2 1 25 25 O 1.22059 * 119.98433 * 0.02562 * 24 3 2 26 26 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 31 31 H 1.07997 * 119.64776 * 0.02562 * 4 3 2 32 32 H 1.08004 * 120.02773 * 180.28145 * 5 4 3 33 33 H 1.07998 * 120.36528 * 179.72425 * 6 5 4 34 34 H 1.09002 * 109.46840 * 214.97526 * 8 7 6 35 35 H 1.09005 * 109.47241 * 334.97573 * 8 7 6 36 36 H 0.97000 * 119.99552 * 345.00546 * 9 8 7 37 37 H 1.09000 * 109.46474 * 90.00210 * 14 13 10 38 38 H 1.08998 * 109.46960 * 209.99886 * 14 13 10 39 39 H 1.08999 * 109.47281 * 330.00169 * 14 13 10 40 40 H 1.08998 * 109.47117 * 215.00176 * 15 13 10 41 41 H 1.09010 * 109.47028 * 335.00143 * 15 13 10 42 42 H 0.96996 * 120.00177 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2472 2.0121 -1.1801 5 6 2.6939 3.2896 -1.2055 6 6 2.9347 3.9709 -0.0041 7 6 2.7090 3.3335 1.1806 8 6 2.9592 4.0429 2.4864 9 7 1.7083 4.6335 2.9689 10 16 1.5869 5.1485 4.5380 11 8 0.2827 5.6943 4.6814 12 8 2.0795 4.0894 5.3472 13 7 2.6445 6.4094 4.7232 14 6 4.0243 6.1524 5.1432 15 6 2.2002 7.7817 4.4672 16 6 1.7721 8.4211 5.7630 17 1 1.8260 7.8614 6.6851 18 6 1.3117 9.7207 5.7713 19 7 1.2456 10.4021 4.6485 20 14 0.7817 10.5135 7.3775 21 1 0.9512 9.5427 8.4883 22 1 1.6171 11.7136 7.6365 23 1 -0.6451 10.9144 7.2846 24 6 2.2401 2.0088 1.1706 25 8 2.0348 1.4264 2.2235 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.0671 1.4905 -2.1084 32 1 2.8681 3.7825 -2.1506 33 1 3.2953 4.9888 -0.0165 34 1 3.3316 3.3297 3.2217 35 1 3.6984 4.8299 2.3366 36 1 0.9511 4.7226 2.3692 37 1 4.6486 5.9965 4.2635 38 1 4.3977 7.0073 5.7069 39 1 4.0530 5.2622 5.7716 40 1 3.0201 8.3540 4.0331 41 1 1.3594 7.7680 3.7737 42 1 0.9214 11.3163 4.6542 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000433343118.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:46:26 Heat of formation + Delta-G solvation = -73.256749 kcal Electronic energy + Delta-G solvation = -26535.750200 eV Core-core repulsion = 22643.498201 eV Total energy + Delta-G solvation = -3892.251998 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.62734 -37.12638 -36.60950 -36.30021 -35.40004 -35.00527 -34.12747 -32.37808 -31.08270 -30.05965 -27.70914 -26.12547 -24.98321 -24.93384 -22.55092 -22.23326 -22.12109 -18.86123 -17.77318 -17.68155 -17.15904 -16.68447 -16.44406 -16.24645 -16.03588 -15.47109 -14.89938 -14.71390 -14.46285 -14.19366 -13.81962 -13.56103 -13.27568 -13.19710 -13.13832 -12.68631 -12.42538 -12.19403 -12.11932 -12.08087 -11.94998 -11.59687 -11.49122 -11.32506 -11.17103 -11.07639 -11.00478 -10.63303 -10.44093 -10.23241 -10.02408 -9.97388 -9.68995 -9.18189 -8.40446 -8.16424 -7.97194 -6.02213 -4.05465 0.51544 1.40378 1.68510 2.35402 3.34337 3.34949 3.41931 3.48206 3.78611 4.18769 4.25077 4.30400 4.49658 4.59532 4.66213 4.72435 4.80488 4.91615 5.00572 5.19575 5.21594 5.33580 5.41950 5.47096 5.54767 5.73550 5.74832 5.82128 5.87256 6.05441 6.10761 6.17186 6.28184 6.39704 6.63655 6.83384 7.20669 7.34142 7.50095 7.70041 7.88840 7.96290 8.26199 8.97482 9.59528 11.06487 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.022966 B = 0.003045 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.899545 B = 9194.191417 C = 9506.390431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.087 3.913 3 N -0.499 5.499 4 C 0.132 3.868 5 C -0.231 4.231 6 C -0.002 4.002 7 C -0.218 4.218 8 C 0.186 3.814 9 N -1.127 6.127 10 S 2.782 3.218 11 O -0.966 6.966 12 O -0.994 6.994 13 N -0.997 5.997 14 C 0.094 3.906 15 C 0.257 3.743 16 C -0.526 4.526 17 H 0.061 0.939 18 C 0.061 3.939 19 N -0.897 5.897 20 Si 0.897 3.103 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.282 1.282 24 C 0.518 3.482 25 O -0.533 6.533 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.160 0.840 32 H 0.146 0.854 33 H 0.140 0.860 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.410 0.590 37 H 0.038 0.962 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.035 0.965 41 H 0.037 0.963 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.156 -17.863 -17.945 25.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.035 4.035 3 N -0.211 5.211 4 C 0.005 3.995 5 C -0.255 4.255 6 C -0.025 4.025 7 C -0.223 4.223 8 C 0.059 3.941 9 N -0.885 5.885 10 S 2.790 3.210 11 O -0.950 6.950 12 O -0.977 6.977 13 N -0.840 5.840 14 C -0.053 4.053 15 C 0.135 3.865 16 C -0.566 4.566 17 H 0.079 0.921 18 C -0.141 4.141 19 N -0.536 5.536 20 Si 0.724 3.276 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.208 1.208 24 C 0.318 3.682 25 O -0.413 6.413 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.119 0.881 30 H 0.108 0.892 31 H 0.177 0.823 32 H 0.164 0.836 33 H 0.158 0.842 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.243 0.757 37 H 0.056 0.944 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.558 -18.508 -16.481 25.198 hybrid contribution -0.414 0.870 -0.040 0.964 sum 4.144 -17.638 -16.522 24.520 Atomic orbital electron populations 1.22125 0.94125 1.03251 1.03174 1.21962 0.95955 0.80667 1.04867 1.45641 1.53894 1.14772 1.06771 1.21944 0.94090 0.94049 0.89460 1.20668 1.10632 0.94634 0.99524 1.21500 0.90195 0.99586 0.91213 1.20782 1.10213 0.94677 0.96670 1.19704 0.85982 0.95891 0.92484 1.56248 1.21179 1.77757 1.33356 1.01927 0.73500 0.72714 0.72887 1.93633 1.37666 1.78856 1.84814 1.93531 1.81871 1.55700 1.66595 1.57634 1.22579 1.21813 1.81969 1.21371 0.82485 1.02471 0.98953 1.19039 0.95316 0.75180 0.96946 1.21564 1.42889 0.97816 0.94331 0.92110 1.24931 0.95409 0.97093 0.96669 1.69925 1.47096 1.10777 1.25839 0.86459 0.78358 0.79068 0.83672 1.19621 1.20999 1.20839 1.16944 0.80462 0.87858 0.82905 1.91012 1.53655 1.67400 1.29216 0.91400 0.92147 0.90582 0.88087 0.89213 0.82297 0.83609 0.84250 0.89405 0.90921 0.75746 0.94377 0.90422 0.91522 0.94738 0.94460 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 10.24 37.16 0.38 -0.76 16 2 C 0.09 0.60 6.05 -4.04 -0.02 0.57 16 3 N -0.50 -4.54 2.58 -119.77 -0.31 -4.85 16 4 C 0.13 0.79 10.28 -16.84 -0.17 0.61 16 5 C -0.23 -1.48 10.01 -39.87 -0.40 -1.88 16 6 C 0.00 -0.02 9.73 -39.51 -0.38 -0.40 16 7 C -0.22 -2.69 5.29 -104.42 -0.55 -3.24 16 8 C 0.19 2.67 6.12 -5.19 -0.03 2.64 16 9 N -1.13 -18.96 6.05 -11.65 -0.07 -19.03 16 10 S 2.78 59.72 6.10 -107.50 -0.66 59.07 16 11 O -0.97 -24.55 17.11 -57.17 -0.98 -25.53 16 12 O -0.99 -22.89 16.21 -57.17 -0.93 -23.82 16 13 N -1.00 -21.46 3.23 -123.05 -0.40 -21.85 16 14 C 0.09 1.67 10.68 59.85 0.64 2.31 16 15 C 0.26 6.57 5.08 -5.19 -0.03 6.54 16 16 C -0.53 -15.14 9.38 -34.44 -0.32 -15.46 16 17 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 20 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 16 21 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 C 0.52 6.96 7.40 -15.45 -0.11 6.85 16 25 O -0.53 -9.32 15.84 4.86 0.08 -9.25 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.10 0.87 7.39 -51.93 -0.38 0.48 16 30 H 0.09 0.30 8.01 -51.93 -0.42 -0.11 16 31 H 0.16 0.31 8.03 -52.49 -0.42 -0.11 16 32 H 0.15 0.54 8.06 -52.48 -0.42 0.12 16 33 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.09 1.41 7.37 -51.93 -0.38 1.02 16 35 H 0.07 0.88 8.05 -51.93 -0.42 0.46 16 36 H 0.41 6.32 8.64 -34.47 -0.30 6.02 16 37 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 39 H 0.07 1.15 7.02 -51.93 -0.36 0.78 16 40 H 0.03 0.88 8.11 -51.93 -0.42 0.46 16 41 H 0.04 1.01 7.61 -51.92 -0.40 0.61 16 42 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 370.10 15.07 5.58 5.58 Total: -1.00 -39.11 370.10 -9.08 -48.19 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -6.00 Total: 0.53 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -1.11 Total: -0.56 kcal Atomic # 7 Polarization: -71.42 SS G_CDS: -0.04 Total: -71.46 kcal Atomic # 8 Polarization: -56.77 SS G_CDS: -1.83 Total: -58.59 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 16 Polarization: 59.72 SS G_CDS: -0.66 Total: 59.07 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -39.11 -9.08 -48.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433343118.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.071 kcal (2) G-P(sol) polarization free energy of solvation -39.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds