Wall clock time and date at job start Tue Mar 31 2020 05:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00370 * 2 1 4 4 H 1.48495 * 109.46922 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46681 * 300.00124 * 3 2 1 6 6 H 1.48500 * 109.47146 * 59.99876 * 3 2 1 7 7 C 1.37884 * 119.99747 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00009 * 181.39976 * 7 2 1 9 9 C 1.50695 * 119.99709 * 1.39516 * 7 2 1 10 10 C 1.52998 * 115.55527 * 325.04240 * 9 7 2 11 11 N 1.46502 * 109.47186 * 305.53006 * 10 9 7 12 12 C 1.34777 * 119.99958 * 184.73353 * 11 10 9 13 13 O 1.21559 * 120.00124 * 5.37805 * 12 11 10 14 14 C 1.47725 * 119.99827 * 185.38109 * 12 11 10 15 15 C 1.37930 * 120.62992 * 175.19599 * 14 12 11 16 16 C 1.40050 * 119.03558 * 180.02562 * 15 14 12 17 17 N 1.31315 * 120.24702 * 359.97438 * 16 15 14 18 18 C 1.33289 * 121.34146 * 0.02562 * 17 16 15 19 19 C 1.40862 * 132.34949 * 179.97438 * 18 17 16 20 20 C 1.46771 * 126.50842 * 0.02621 * 19 18 17 21 21 N 1.34774 * 120.00169 * 179.97438 * 20 19 18 22 22 O 1.21688 * 120.00103 * 0.02562 * 20 19 18 23 23 C 1.40410 * 106.98613 * 180.02562 * 19 18 17 24 24 N 1.30875 * 108.75164 * 0.02562 * 23 19 18 25 25 N 1.36625 * 120.97628 * 0.02562 * 18 17 16 26 26 C 1.52998 * 117.49659 * 110.71844 * 9 7 2 27 27 C 1.53006 * 117.49738 * 179.37395 * 9 7 2 28 28 H 0.97009 * 119.99674 * 5.00337 * 1 2 3 29 29 H 1.08996 * 109.47705 * 185.52716 * 10 9 7 30 30 H 1.09005 * 109.47087 * 65.52202 * 10 9 7 31 31 H 0.96997 * 120.00114 * 4.72842 * 11 10 9 32 32 H 1.08006 * 120.48176 * 0.03578 * 15 14 12 33 33 H 1.08004 * 119.87254 * 179.71613 * 16 15 14 34 34 H 0.97004 * 120.00332 * 0.02562 * 21 20 19 35 35 H 0.97001 * 120.00176 * 180.02562 * 21 20 19 36 36 H 1.08007 * 125.62818 * 180.02562 * 23 19 18 37 37 H 1.09005 * 117.49488 * 215.00101 * 26 9 7 38 38 H 1.08993 * 117.50088 * 0.02562 * 26 9 7 39 39 H 1.09004 * 117.49739 * 359.97438 * 27 9 7 40 40 H 1.08998 * 117.49611 * 144.96905 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0842 -1.1943 0.0234 9 6 1.2512 -2.4989 -0.0307 10 6 -0.0749 -2.5139 0.7323 11 7 0.1521 -2.0850 2.1146 12 6 -0.8607 -2.1116 3.0034 13 8 -1.9356 -2.5823 2.6861 14 6 -0.6645 -1.5687 4.3632 15 6 -1.7180 -1.4988 5.2507 16 6 -1.4946 -0.9776 6.5313 17 7 -0.2975 -0.5632 6.8772 18 6 0.7293 -0.6249 6.0295 19 6 2.0829 -0.2544 6.1502 20 6 2.7259 0.3315 7.3324 21 7 4.0382 0.6371 7.3039 22 8 2.0742 0.5405 8.3386 23 6 2.7004 -0.5521 4.9248 24 7 1.8066 -1.0618 4.1161 25 7 0.5701 -1.1228 4.7673 26 6 1.3406 -3.3358 -1.3083 27 6 2.0734 -3.7892 -0.0433 28 1 -0.4850 0.8370 -0.0733 29 1 -0.4853 -3.5236 0.7280 30 1 -0.7782 -1.8337 0.2518 31 1 1.0314 -1.7819 2.3902 32 1 -2.7009 -1.8413 4.9624 33 1 -2.3109 -0.9124 7.2355 34 1 4.5578 0.4702 6.5019 35 1 4.4632 1.0240 8.0853 36 1 3.7414 -0.3875 4.6885 37 1 0.4545 -3.8970 -1.6054 38 1 1.9445 -2.9429 -2.1261 39 1 3.1593 -3.6942 -0.0295 40 1 1.6698 -4.6484 0.4924 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435955760.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:18 Heat of formation + Delta-G solvation = 80.104571 kcal Electronic energy + Delta-G solvation = -28217.077808 eV Core-core repulsion = 24228.324855 eV Total energy + Delta-G solvation = -3988.752953 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.54612 -39.40202 -38.76745 -37.96273 -36.80249 -34.15681 -33.53018 -33.19239 -32.26961 -31.20127 -29.46355 -26.99178 -25.71813 -24.78026 -24.05332 -22.71989 -21.48907 -21.18711 -19.81074 -19.30779 -18.42399 -17.82657 -17.23920 -17.05392 -16.39394 -16.24042 -16.05137 -15.18783 -14.98036 -14.94984 -14.51109 -14.16131 -14.02599 -13.82307 -13.74578 -13.28849 -13.06726 -12.76603 -12.70689 -12.00087 -11.64540 -11.49781 -11.19628 -11.09485 -10.82694 -10.59682 -10.36201 -10.23784 -9.91635 -9.85268 -9.74599 -9.64248 -9.51110 -9.08831 -8.98223 -8.41365 -8.20511 -8.03074 -6.12773 -4.29018 0.01185 0.62030 1.72525 2.02503 2.81877 3.13435 3.23961 3.25355 3.30604 3.47110 3.53164 3.65420 3.71548 4.02330 4.21487 4.58389 4.69515 4.79548 4.88630 4.91880 5.26906 5.35492 5.39596 5.46018 5.71067 5.91035 6.05838 6.19226 6.27900 6.44528 6.50529 6.58361 6.77015 6.81661 6.94142 7.13176 7.17168 7.30811 7.37183 7.45125 7.47143 7.82078 8.19656 8.23335 8.40292 8.70133 8.79426 9.34387 10.79121 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.011562 B = 0.004877 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.116190 B = 5740.218283 C = 6897.643653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.074 3.926 3 Si 0.892 3.108 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.487 4.487 8 H 0.063 0.937 9 C 0.033 3.967 10 C 0.158 3.842 11 N -0.648 5.648 12 C 0.538 3.462 13 O -0.539 6.539 14 C 0.166 3.834 15 C -0.166 4.166 16 C 0.186 3.814 17 N -0.441 5.441 18 C 0.323 3.677 19 C -0.301 4.301 20 C 0.604 3.396 21 N -0.857 5.857 22 O -0.538 6.538 23 C 0.131 3.869 24 N -0.290 5.290 25 N -0.293 5.293 26 C -0.195 4.195 27 C -0.211 4.211 28 H 0.262 0.738 29 H 0.030 0.970 30 H 0.121 0.879 31 H 0.419 0.581 32 H 0.183 0.817 33 H 0.192 0.808 34 H 0.398 0.602 35 H 0.403 0.597 36 H 0.206 0.794 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.780 -1.140 10.654 11.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.129 4.129 3 Si 0.719 3.281 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.525 4.525 8 H 0.082 0.918 9 C 0.032 3.968 10 C 0.035 3.965 11 N -0.298 5.298 12 C 0.319 3.681 13 O -0.419 6.419 14 C 0.046 3.954 15 C -0.191 4.191 16 C 0.005 3.995 17 N -0.152 5.152 18 C 0.090 3.910 19 C -0.318 4.318 20 C 0.391 3.609 21 N -0.421 5.421 22 O -0.415 6.415 23 C -0.051 4.051 24 N -0.111 5.111 25 N -0.063 5.063 26 C -0.233 4.233 27 C -0.248 4.248 28 H 0.073 0.927 29 H 0.049 0.951 30 H 0.138 0.862 31 H 0.262 0.738 32 H 0.201 0.799 33 H 0.208 0.792 34 H 0.226 0.774 35 H 0.234 0.766 36 H 0.223 0.777 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.590 -1.350 10.539 10.744 hybrid contribution 1.330 1.138 -0.223 1.764 sum 2.920 -0.212 10.317 10.724 Atomic orbital electron populations 1.69820 1.05801 1.26704 1.48975 1.24971 0.94849 0.99143 0.93967 0.86526 0.80267 0.83510 0.77777 1.19460 1.20802 1.21020 1.20549 0.92617 0.88354 1.50954 0.91846 1.19206 0.92930 0.90058 0.94586 1.21331 0.98892 0.97214 0.79040 1.46155 1.12969 1.59894 1.10768 1.17439 0.85954 0.81932 0.82767 1.90786 1.25661 1.47649 1.77787 1.21746 0.81408 0.94952 0.97305 1.22485 1.00249 1.02907 0.93449 1.23681 0.94038 0.87849 0.93955 1.68046 0.98650 1.17075 1.31454 1.20399 0.94792 0.94618 0.81220 1.19212 0.90853 1.23428 0.98303 1.16765 0.81528 0.76711 0.85900 1.43558 1.10274 1.68528 1.19706 1.90859 1.63534 1.54021 1.33064 1.24114 0.99620 0.91950 0.89405 1.77441 0.86729 1.28227 1.18733 1.47303 1.08165 1.39072 1.11782 1.22948 1.01386 1.06320 0.92676 1.22962 0.98266 1.00302 1.03272 0.92737 0.95146 0.86185 0.73824 0.79930 0.79152 0.77355 0.76631 0.77739 0.91352 0.90017 0.90448 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.71 10.21 55.43 0.57 -22.14 16 2 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 3 Si 0.89 19.83 29.54 -169.99 -5.02 14.81 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.49 -12.04 8.31 -34.44 -0.29 -12.33 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.03 0.76 2.06 -155.66 -0.32 0.43 16 10 C 0.16 3.64 4.63 -4.04 -0.02 3.62 16 11 N -0.65 -14.16 5.16 -61.29 -0.32 -14.47 16 12 C 0.54 11.01 7.79 -12.38 -0.10 10.91 16 13 O -0.54 -11.76 16.37 5.31 0.09 -11.67 16 14 C 0.17 2.86 6.84 -81.63 -0.56 2.30 16 15 C -0.17 -2.15 9.66 -39.02 -0.38 -2.53 16 16 C 0.19 2.15 11.27 -17.09 -0.19 1.95 16 17 N -0.44 -6.86 10.21 -12.01 -0.12 -6.98 16 18 C 0.32 5.45 7.74 -155.86 -1.21 4.24 16 19 C -0.30 -4.57 6.17 -104.64 -0.65 -5.22 16 20 C 0.60 8.71 8.06 -12.81 -0.10 8.60 16 21 N -0.86 -7.73 8.86 30.28 0.27 -7.46 16 22 O -0.54 -9.83 17.57 5.20 0.09 -9.74 16 23 C 0.13 1.79 11.44 -17.14 -0.20 1.60 16 24 N -0.29 -5.05 9.83 30.75 0.30 -4.75 16 25 N -0.29 -5.12 3.90 -8.43 -0.03 -5.15 16 26 C -0.19 -4.09 9.96 -26.70 -0.27 -4.35 16 27 C -0.21 -4.28 9.92 -26.69 -0.26 -4.54 16 28 H 0.26 6.66 8.32 -40.82 -0.34 6.32 16 29 H 0.03 0.68 8.05 -51.93 -0.42 0.26 16 30 H 0.12 3.10 5.90 -51.93 -0.31 2.80 16 31 H 0.42 9.16 4.96 -40.82 -0.20 8.95 16 32 H 0.18 1.94 7.69 -52.48 -0.40 1.53 16 33 H 0.19 1.23 8.06 -52.48 -0.42 0.81 16 34 H 0.40 2.40 7.75 -40.82 -0.32 2.08 16 35 H 0.40 2.98 8.93 -40.82 -0.36 2.62 16 36 H 0.21 1.75 7.46 -52.48 -0.39 1.36 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 39 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 349.62 15.07 5.27 5.27 Total: -1.00 -33.60 349.62 -7.60 -41.20 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -4.06 Total: 14.66 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: -4.63 Total: 6.45 kcal Atomic # 7 Polarization: -61.63 SS G_CDS: 0.66 Total: -60.97 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: 0.18 Total: -21.41 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.60 -7.60 -41.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435955760.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.300 kcal (2) G-P(sol) polarization free energy of solvation -33.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds