Wall clock time and date at job start Tue Mar 31 2020 05:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47355 * 2 1 4 4 C 1.50704 * 109.47086 * 119.99754 * 2 1 3 5 5 H 1.07992 * 120.00120 * 116.68964 * 4 2 1 6 6 C 1.37875 * 119.99522 * 296.68843 * 4 2 1 7 7 N 1.31513 * 120.00501 * 352.38401 * 6 4 2 8 8 Si 1.86806 * 119.99715 * 172.66612 * 6 4 2 9 9 H 1.48506 * 109.47122 * 264.79856 * 8 6 4 10 10 H 1.48503 * 109.46939 * 24.79275 * 8 6 4 11 11 H 1.48498 * 109.47436 * 144.79640 * 8 6 4 12 12 N 1.46497 * 109.47488 * 239.99998 * 2 1 3 13 13 C 1.34780 * 120.00312 * 84.99823 * 12 2 1 14 14 O 1.21382 * 119.99932 * 0.02562 * 13 12 2 15 15 C 1.49229 * 120.00056 * 180.02562 * 13 12 2 16 16 O 1.21755 * 120.00165 * 0.02562 * 15 13 12 17 17 N 1.33177 * 120.00156 * 179.97438 * 15 13 12 18 18 C 1.33358 * 120.00450 * 179.97438 * 17 15 13 19 19 C 1.40895 * 126.33598 * 359.69252 * 18 17 15 20 20 C 1.35273 * 108.23499 * 179.88289 * 19 18 17 21 21 N 1.36410 * 108.85861 * 0.38022 * 20 19 18 22 22 C 1.39335 * 125.87347 * 179.74128 * 21 20 19 23 23 C 1.39463 * 120.86718 * 179.74348 * 22 21 20 24 24 C 1.37930 * 119.06981 * 179.77667 * 23 22 21 25 25 N 1.31979 * 120.84375 * 0.50343 * 24 23 22 26 26 C 1.31977 * 121.90767 * 359.74620 * 25 24 23 27 27 C 1.37932 * 120.84352 * 359.97438 * 26 25 24 28 28 N 1.37281 * 126.34095 * 180.02562 * 18 17 15 29 29 H 0.97000 * 126.33886 * 0.02562 * 28 18 17 30 30 H 1.09001 * 109.47267 * 177.81203 * 1 2 3 31 31 H 1.08995 * 109.47232 * 297.82001 * 1 2 3 32 32 H 1.09001 * 109.47019 * 57.81936 * 1 2 3 33 33 H 0.97006 * 119.99873 * 180.27692 * 7 6 4 34 34 H 0.97006 * 119.99727 * 264.99964 * 12 2 1 35 35 H 1.08000 * 125.88312 * 0.02562 * 19 18 17 36 36 H 1.08007 * 125.57449 * 180.17468 * 20 19 18 37 37 H 1.08004 * 120.46345 * 359.97438 * 23 22 21 38 38 H 1.07997 * 119.58195 * 180.23004 * 24 23 22 39 39 H 1.07998 * 119.57634 * 180.02562 * 26 25 24 40 40 H 1.07997 * 120.46690 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6083 -1.6185 1.1324 6 6 1.7564 -0.2007 2.4815 7 7 1.1871 0.9789 2.6002 8 14 2.1985 -1.1822 4.0082 9 1 1.0149 -1.9587 4.4575 10 1 3.3110 -2.1140 3.6927 11 1 2.6209 -0.2546 5.0881 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8589 1.1596 -2.4116 15 6 2.6441 -0.7219 -3.5757 16 8 2.9329 -1.9035 -3.5212 17 7 2.7709 -0.0578 -4.7230 18 6 3.2155 -0.6864 -5.8119 19 6 3.5933 -2.0410 -5.8980 20 6 3.9827 -2.2919 -7.1690 21 7 3.8756 -1.1437 -7.8977 22 6 4.1900 -1.0011 -9.2476 23 6 4.0351 0.2257 -9.8926 24 6 4.3620 0.3262 -11.2288 25 7 4.8063 -0.7213 -11.8974 26 6 4.9617 -1.9000 -11.3244 27 6 4.6627 -2.0827 -9.9903 28 7 3.3958 -0.1319 -7.0547 29 1 3.2237 0.7897 -7.3034 30 1 -0.3634 -1.0269 -0.0392 31 1 -0.3633 0.4796 0.9088 32 1 -0.3633 0.5473 -0.8698 33 1 0.9967 1.3391 3.4806 34 1 2.2491 -1.6318 -1.1525 35 1 3.5731 -2.7565 -5.0892 36 1 4.3257 -3.2447 -7.5446 37 1 3.6674 1.0857 -9.3525 38 1 4.2488 1.2732 -11.7356 39 1 5.3285 -2.7319 -11.9073 40 1 4.7919 -3.0499 -9.5277 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438814704.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:34 Heat of formation + Delta-G solvation = 96.340653 kcal Electronic energy + Delta-G solvation = -26005.083474 eV Core-core repulsion = 22017.034571 eV Total energy + Delta-G solvation = -3988.048903 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.49883 -40.61959 -39.59407 -37.78397 -35.39284 -34.71809 -33.12205 -32.72733 -32.14264 -31.68060 -29.80058 -28.99332 -25.45993 -25.12481 -24.61873 -23.63695 -22.45993 -21.92226 -20.66364 -19.68032 -18.85926 -17.39697 -17.01102 -16.76152 -16.61435 -16.44313 -16.09605 -15.68063 -15.40944 -15.07925 -14.92513 -14.68985 -14.38168 -14.37180 -14.03221 -13.72113 -13.25022 -12.98875 -12.50626 -12.29910 -12.03033 -11.69370 -11.00312 -10.96449 -10.91221 -10.67218 -10.46635 -10.32883 -10.25991 -10.19899 -10.04690 -10.00179 -9.40947 -9.02835 -8.62789 -8.44317 -8.00694 -7.84581 -6.07208 -4.12953 -0.16501 0.30387 0.53214 0.91322 1.85804 2.77825 3.01835 3.04451 3.30751 3.37276 3.40335 3.64953 3.70892 3.81071 3.86832 4.07988 4.32001 4.34054 4.41224 4.49208 4.66092 4.82652 4.95390 4.98646 5.11408 5.24830 5.26601 5.58873 5.60593 5.81967 6.15879 6.45234 6.82049 6.85141 6.99265 7.15755 7.23350 7.27961 7.47664 7.60444 7.74714 7.92013 8.13588 8.40663 8.78163 8.88579 9.16515 9.52655 11.01028 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.039396 B = 0.001924 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.566602 B =14549.319153 C =15018.512519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.261 3.739 3 H 0.056 0.944 4 C -0.533 4.533 5 H 0.064 0.936 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.273 1.273 11 H -0.286 1.286 12 N -0.683 5.683 13 C 0.508 3.492 14 O -0.518 6.518 15 C 0.498 3.502 16 O -0.543 6.543 17 N -0.624 5.624 18 C 0.486 3.514 19 C -0.263 4.263 20 C 0.132 3.868 21 N -0.326 5.326 22 C 0.219 3.781 23 C -0.214 4.214 24 C 0.143 3.857 25 N -0.501 5.501 26 C 0.142 3.858 27 C -0.204 4.204 28 N -0.476 5.476 29 H 0.454 0.546 30 H 0.030 0.970 31 H 0.079 0.921 32 H 0.020 0.980 33 H 0.264 0.736 34 H 0.398 0.602 35 H 0.204 0.796 36 H 0.203 0.797 37 H 0.139 0.861 38 H 0.167 0.833 39 H 0.169 0.831 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.810 -7.450 -30.413 32.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.160 3.840 3 H 0.074 0.926 4 C -0.572 4.572 5 H 0.082 0.918 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.212 1.212 12 N -0.334 5.334 13 C 0.287 3.713 14 O -0.394 6.394 15 C 0.281 3.719 16 O -0.421 6.421 17 N -0.380 5.380 18 C 0.230 3.770 19 C -0.292 4.292 20 C 0.001 3.999 21 N -0.109 5.109 22 C 0.116 3.884 23 C -0.237 4.237 24 C -0.014 4.014 25 N -0.211 5.211 26 C -0.015 4.015 27 C -0.228 4.228 28 N -0.206 5.206 29 H 0.304 0.696 30 H 0.049 0.951 31 H 0.098 0.902 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.232 0.768 35 H 0.220 0.780 36 H 0.220 0.780 37 H 0.157 0.843 38 H 0.184 0.816 39 H 0.186 0.814 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 7.638 -6.083 -31.071 32.569 hybrid contribution 0.118 -1.133 1.751 2.089 sum 7.756 -7.216 -29.320 31.175 Atomic orbital electron populations 1.22020 0.98446 0.98972 1.00747 1.18870 0.90922 0.94513 0.79681 0.92575 1.21208 1.35316 1.10467 0.90161 0.91829 1.24892 0.95007 0.94749 0.99005 1.69978 1.42194 1.15831 1.23970 0.86445 0.78659 0.79801 0.82269 1.20571 1.19774 1.21164 1.46420 1.63159 1.14270 1.09505 1.19362 0.80802 0.87249 0.83877 1.90687 1.48968 1.15285 1.84433 1.21407 0.76909 0.85309 0.88307 1.90576 1.45846 1.18501 1.87148 1.69063 1.33222 1.37994 0.97761 1.19402 0.84518 0.88560 0.84520 1.23170 1.10106 0.97839 0.98123 1.23001 0.96178 0.89259 0.91424 1.43258 1.59051 1.04004 1.04569 1.17867 0.95536 0.95937 0.79061 1.21768 1.07697 0.96657 0.97618 1.22712 0.91055 0.97760 0.89867 1.67796 1.14246 0.99734 1.39354 1.22743 0.92745 0.95185 0.90842 1.21775 1.06159 0.98730 0.96166 1.44227 1.64838 1.07434 1.04144 0.69593 0.95126 0.90217 0.96124 0.92615 0.76831 0.77985 0.78033 0.84326 0.81570 0.81374 0.83471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 9.32 37.16 0.35 -3.35 16 2 C 0.26 7.08 2.45 -69.08 -0.17 6.91 16 3 H 0.06 1.73 7.57 -51.93 -0.39 1.33 16 4 C -0.53 -14.82 8.69 -34.44 -0.30 -15.12 16 5 H 0.06 1.71 7.73 -52.49 -0.41 1.30 16 6 C 0.07 1.86 5.21 -17.82 -0.09 1.77 16 7 N -0.88 -25.65 11.92 55.43 0.66 -24.99 16 8 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 N -0.68 -16.30 5.06 -55.43 -0.28 -16.58 16 13 C 0.51 12.06 7.85 -11.69 -0.09 11.97 16 14 O -0.52 -13.80 16.57 5.47 0.09 -13.71 16 15 C 0.50 10.16 7.77 -12.40 -0.10 10.06 16 16 O -0.54 -10.50 13.39 5.14 0.07 -10.43 16 17 N -0.62 -11.32 10.33 -11.99 -0.12 -11.45 16 18 C 0.49 6.46 8.07 -155.18 -1.25 5.21 16 19 C -0.26 -2.83 9.52 -39.63 -0.38 -3.20 16 20 C 0.13 0.81 10.80 -16.57 -0.18 0.64 16 21 N -0.33 -2.19 3.80 -10.34 -0.04 -2.23 16 22 C 0.22 1.15 6.72 -83.54 -0.56 0.59 16 23 C -0.21 -1.00 9.73 -39.24 -0.38 -1.39 16 24 C 0.14 0.66 11.17 -17.60 -0.20 0.47 16 25 N -0.50 -2.97 10.36 -13.34 -0.14 -3.11 16 26 C 0.14 0.55 11.17 -17.60 -0.20 0.35 16 27 C -0.20 -0.71 9.53 -39.24 -0.37 -1.08 16 28 N -0.48 -4.26 7.03 31.31 0.22 -4.04 16 29 H 0.45 3.11 8.00 -182.55 -1.46 1.65 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.08 2.18 6.60 -51.93 -0.34 1.84 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.40 8.74 8.00 -40.82 -0.33 8.42 16 35 H 0.20 2.47 5.77 -52.49 -0.30 2.17 16 36 H 0.20 0.26 7.07 -52.48 -0.37 -0.11 16 37 H 0.14 0.45 7.09 -52.48 -0.37 0.07 16 38 H 0.17 0.37 8.06 -52.49 -0.42 -0.05 16 39 H 0.17 0.18 8.06 -52.49 -0.42 -0.24 16 40 H 0.15 0.09 6.84 -52.49 -0.36 -0.26 16 LS Contribution 352.70 15.07 5.32 5.32 Total: -1.00 -37.79 352.70 -8.33 -46.12 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -5.16 Total: 5.01 kcal Atomic # 6 Polarization: 17.75 SS G_CDS: -3.92 Total: 13.83 kcal Atomic # 7 Polarization: -62.69 SS G_CDS: 0.30 Total: -62.40 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: 0.16 Total: -24.14 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -37.79 -8.33 -46.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438814704.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.457 kcal (2) G-P(sol) polarization free energy of solvation -37.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds