Wall clock time and date at job start Tue Mar 31 2020 05:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47138 * 2 1 4 4 C 1.50698 * 109.46829 * 119.99459 * 2 1 3 5 5 H 1.08002 * 120.00039 * 119.99830 * 4 2 1 6 6 C 1.37879 * 120.00295 * 300.00224 * 4 2 1 7 7 N 1.31510 * 119.99703 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99958 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47274 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47207 * 299.99882 * 8 6 4 11 11 H 1.48503 * 109.47183 * 60.00102 * 8 6 4 12 12 N 1.46492 * 109.47241 * 239.99760 * 2 1 3 13 13 C 1.34780 * 120.00059 * 85.00302 * 12 2 1 14 14 O 1.21361 * 120.00232 * 359.97438 * 13 12 2 15 15 C 1.49343 * 119.99852 * 179.97438 * 13 12 2 16 16 O 1.21385 * 119.99970 * 359.97438 * 15 13 12 17 17 N 1.34770 * 119.99614 * 179.97438 * 15 13 12 18 18 C 1.39764 * 119.99978 * 174.48944 * 17 15 13 19 19 C 1.39125 * 120.51471 * 335.23296 * 18 17 15 20 20 C 1.38642 * 118.41273 * 180.02562 * 19 18 17 21 21 C 1.38207 * 119.36712 * 359.97438 * 20 19 18 22 22 N 1.31894 * 121.00216 * 0.02562 * 21 20 19 23 23 C 1.32239 * 121.72715 * 359.69816 * 22 21 20 24 24 N 1.39843 * 119.73848 * 180.28822 * 23 22 21 25 25 C 1.35822 * 126.10067 * 335.01591 * 24 23 22 26 26 C 1.35307 * 107.61252 * 179.83414 * 25 24 23 27 27 C 1.39931 * 107.97073 * 0.42087 * 26 25 24 28 28 N 1.30843 * 108.36378 * 359.73646 * 27 26 25 29 29 H 1.09001 * 109.47070 * 300.00805 * 1 2 3 30 30 H 1.08999 * 109.46564 * 60.00324 * 1 2 3 31 31 H 1.09000 * 109.47138 * 180.02562 * 1 2 3 32 32 H 0.97003 * 119.99766 * 179.97438 * 7 6 4 33 33 H 0.97002 * 119.99897 * 265.00311 * 12 2 1 34 34 H 0.96997 * 120.00325 * 354.49493 * 17 15 13 35 35 H 1.07990 * 120.79309 * 359.97438 * 19 18 17 36 36 H 1.07997 * 120.31179 * 180.02562 * 20 19 18 37 37 H 1.07999 * 119.49277 * 180.02562 * 21 20 19 38 38 H 1.08006 * 126.19699 * 359.95217 * 25 24 23 39 39 H 1.08007 * 126.01188 * 180.15266 * 26 25 24 40 40 H 1.07999 * 125.81583 * 179.71331 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8304 2.6033 8 14 2.3212 -1.1201 4.0080 9 1 1.8258 -0.4204 5.2205 10 1 1.8256 -2.5200 4.0079 11 1 3.8062 -1.1207 4.0083 12 7 2.0184 -0.6906 -1.1961 13 6 2.1472 -0.0183 -2.3571 14 8 1.8582 1.1591 -2.4118 15 6 2.6456 -0.7223 -3.5762 16 8 2.9351 -1.8998 -3.5214 17 7 2.7739 -0.0501 -4.7373 18 6 3.3476 -0.6760 -5.8474 19 6 4.2293 -1.7393 -5.6816 20 6 4.7733 -2.3278 -6.8130 21 6 4.4267 -1.8457 -8.0610 22 7 3.5881 -0.8359 -8.1903 23 6 3.0408 -0.2475 -7.1401 24 7 2.1521 0.8161 -7.3256 25 6 2.1105 1.6461 -8.3999 26 6 1.1101 2.5333 -8.1934 27 6 0.5274 2.2462 -6.9540 28 7 1.1497 1.2194 -6.4339 29 1 -0.3633 0.5140 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.7088 1.1616 3.4843 33 1 2.2491 -1.6318 -1.1525 34 1 2.4681 0.8681 -4.8025 35 1 4.4844 -2.0973 -4.6952 36 1 5.4607 -3.1555 -6.7198 37 1 4.8489 -2.3028 -8.9436 38 1 2.7575 1.6042 -9.2637 39 1 0.8160 3.3266 -8.8648 40 1 -0.2954 2.7812 -6.5033 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438873546.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:10 Heat of formation + Delta-G solvation = 70.902853 kcal Electronic energy + Delta-G solvation = -27198.723609 eV Core-core repulsion = 23209.571640 eV Total energy + Delta-G solvation = -3989.151969 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.95526 -40.80594 -39.77284 -38.15851 -35.66786 -34.83488 -33.88286 -32.45036 -31.61663 -30.48324 -29.45923 -29.07968 -25.45915 -25.23148 -24.48176 -23.20397 -21.49410 -21.15736 -20.83644 -19.67786 -18.82495 -18.59005 -17.53336 -16.86961 -16.14257 -15.86343 -15.81714 -15.49924 -15.28143 -15.05916 -14.77574 -14.28170 -14.03594 -13.84988 -13.59294 -13.51773 -13.12712 -12.99038 -12.74104 -12.50054 -11.83386 -11.42071 -11.30801 -11.16009 -11.02310 -11.01164 -10.83168 -10.65517 -10.40044 -10.29500 -10.18775 -9.62823 -9.20869 -9.16123 -9.03931 -8.64338 -8.22060 -8.14399 -6.19110 -4.29048 0.35419 0.77811 1.73634 1.79742 1.92830 2.48401 2.60631 3.23844 3.28768 3.30657 3.37514 3.66775 3.93161 4.01520 4.20506 4.30689 4.57099 4.67689 4.73785 4.87577 5.00781 5.10063 5.14004 5.22465 5.42770 5.62088 5.71107 5.82093 5.90435 6.25600 6.34337 6.70444 6.78346 6.83579 6.99341 7.02188 7.14306 7.19141 7.36882 7.57714 7.59011 7.72485 7.82482 8.03129 8.39838 8.57795 8.82123 9.37949 10.86918 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.018069 B = 0.002920 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.245292 B = 9586.329093 C =10943.160957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.262 3.738 3 H 0.055 0.945 4 C -0.538 4.538 5 H 0.064 0.936 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.905 3.095 9 H -0.285 1.285 10 H -0.275 1.275 11 H -0.275 1.275 12 N -0.667 5.667 13 C 0.496 3.504 14 O -0.528 6.528 15 C 0.510 3.490 16 O -0.507 6.507 17 N -0.630 5.630 18 C 0.122 3.878 19 C -0.074 4.074 20 C -0.153 4.153 21 C 0.103 3.897 22 N -0.480 5.480 23 C 0.332 3.668 24 N -0.328 5.328 25 C 0.081 3.919 26 C -0.265 4.265 27 C 0.071 3.929 28 N -0.289 5.289 29 H 0.095 0.905 30 H 0.017 0.983 31 H 0.030 0.970 32 H 0.266 0.734 33 H 0.402 0.598 34 H 0.431 0.569 35 H 0.167 0.833 36 H 0.148 0.852 37 H 0.169 0.831 38 H 0.180 0.820 39 H 0.157 0.843 40 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.182 -1.309 -22.275 22.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.162 3.838 3 H 0.072 0.928 4 C -0.577 4.577 5 H 0.082 0.918 6 C -0.135 4.135 7 N -0.520 5.520 8 Si 0.732 3.268 9 H -0.211 1.211 10 H -0.200 1.200 11 H -0.201 1.201 12 N -0.316 5.316 13 C 0.274 3.726 14 O -0.406 6.406 15 C 0.294 3.706 16 O -0.382 6.382 17 N -0.278 5.278 18 C 0.020 3.980 19 C -0.102 4.102 20 C -0.174 4.174 21 C -0.056 4.056 22 N -0.192 5.192 23 C 0.102 3.898 24 N -0.106 5.106 25 C -0.062 4.062 26 C -0.294 4.294 27 C -0.117 4.117 28 N -0.108 5.108 29 H 0.113 0.887 30 H 0.036 0.964 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.236 0.764 34 H 0.274 0.726 35 H 0.185 0.815 36 H 0.166 0.834 37 H 0.186 0.814 38 H 0.198 0.802 39 H 0.175 0.825 40 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 4.962 -1.675 -21.807 22.427 hybrid contribution 0.306 -0.203 0.765 0.849 sum 5.268 -1.878 -21.042 21.773 Atomic orbital electron populations 1.22103 0.97774 0.99600 1.01266 1.18985 0.91492 0.94131 0.79218 0.92758 1.21152 1.32948 1.13528 0.90029 0.91783 1.24875 0.94668 0.94921 0.99083 1.69883 1.35585 1.22310 1.24219 0.86446 0.79208 0.79621 0.81494 1.21064 1.20038 1.20079 1.46495 1.61400 1.14477 1.09239 1.19523 0.81398 0.87329 0.84311 1.90746 1.50255 1.15139 1.84483 1.21105 0.77876 0.86821 0.84826 1.90672 1.47474 1.15206 1.84825 1.43369 1.58008 1.18253 1.08177 1.18323 0.96280 0.97462 0.85922 1.21931 0.92566 0.93672 1.02027 1.22150 1.01288 1.01509 0.92436 1.22482 0.93865 0.91419 0.97858 1.66884 1.11038 1.10152 1.31123 1.17353 0.93344 0.90930 0.88191 1.45781 1.25717 1.23007 1.16125 1.22880 0.99698 0.91034 0.92550 1.21655 1.01606 1.05725 1.00373 1.24233 0.99168 0.93922 0.94410 1.77450 1.01903 1.16768 1.14710 0.88689 0.96392 0.95086 0.92359 0.76352 0.72626 0.81526 0.83415 0.81391 0.80240 0.82543 0.78790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.26 37.16 0.34 -3.31 16 2 C 0.26 6.60 2.56 -69.08 -0.18 6.43 16 3 H 0.05 1.54 7.58 -51.93 -0.39 1.14 16 4 C -0.54 -14.15 8.73 -34.44 -0.30 -14.45 16 5 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -24.38 11.32 55.43 0.63 -23.75 16 8 Si 0.91 20.45 29.54 -169.99 -5.02 15.43 16 9 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 N -0.67 -14.37 5.06 -55.40 -0.28 -14.65 16 13 C 0.50 10.24 7.85 -11.63 -0.09 10.15 16 14 O -0.53 -12.07 16.15 5.49 0.09 -11.98 16 15 C 0.51 9.08 7.70 -11.64 -0.09 8.99 16 16 O -0.51 -9.04 13.68 5.47 0.07 -8.97 16 17 N -0.63 -10.12 4.76 -10.08 -0.05 -10.17 16 18 C 0.12 1.74 6.44 -83.41 -0.54 1.20 16 19 C -0.07 -0.91 8.82 -39.10 -0.34 -1.25 16 20 C -0.15 -1.35 10.10 -39.44 -0.40 -1.75 16 21 C 0.10 0.89 11.17 -17.54 -0.20 0.70 16 22 N -0.48 -5.54 10.00 -12.12 -0.12 -5.66 16 23 C 0.33 4.48 7.43 -154.16 -1.15 3.33 16 24 N -0.33 -4.37 3.70 -11.95 -0.04 -4.41 16 25 C 0.08 0.84 11.20 -16.83 -0.19 0.65 16 26 C -0.27 -2.45 10.80 -39.99 -0.43 -2.88 16 27 C 0.07 0.78 12.02 -17.34 -0.21 0.57 16 28 N -0.29 -4.12 9.79 30.64 0.30 -3.82 16 29 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.40 7.99 8.01 -40.82 -0.33 7.66 16 34 H 0.43 7.11 6.07 -40.82 -0.25 6.87 16 35 H 0.17 2.16 5.90 -52.49 -0.31 1.85 16 36 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.17 0.83 8.06 -52.49 -0.42 0.40 16 38 H 0.18 1.40 8.06 -52.48 -0.42 0.97 16 39 H 0.16 0.97 8.06 -52.48 -0.42 0.55 16 40 H 0.20 1.55 8.06 -52.49 -0.42 1.12 16 LS Contribution 350.95 15.07 5.29 5.29 Total: -1.00 -31.70 350.95 -7.09 -38.79 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -4.09 Total: 13.80 kcal Atomic # 6 Polarization: 13.96 SS G_CDS: -3.86 Total: 10.10 kcal Atomic # 7 Polarization: -62.89 SS G_CDS: 0.43 Total: -62.45 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: 0.16 Total: -20.95 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.70 -7.09 -38.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438873546.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.690 kcal (2) G-P(sol) polarization free energy of solvation -31.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds