Wall clock time and date at job start Tue Mar 31 2020 05:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47031 * 2 1 4 4 C 1.50698 * 109.47248 * 119.99737 * 2 1 3 5 5 H 1.07994 * 120.00046 * 120.00079 * 4 2 1 6 6 C 1.37884 * 120.00129 * 300.00521 * 4 2 1 7 7 N 1.31514 * 119.99787 * 359.97438 * 6 4 2 8 8 Si 1.86791 * 120.00164 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46987 * 270.00193 * 8 6 4 10 10 H 1.48503 * 109.47391 * 29.99984 * 8 6 4 11 11 H 1.48497 * 109.47284 * 150.00069 * 8 6 4 12 12 N 1.46492 * 109.47651 * 240.00298 * 2 1 3 13 13 C 1.34779 * 120.00308 * 84.99277 * 12 2 1 14 14 O 1.21361 * 119.99848 * 0.02562 * 13 12 2 15 15 C 1.49340 * 119.99924 * 179.97438 * 13 12 2 16 16 O 1.21382 * 120.00268 * 0.02562 * 15 13 12 17 17 N 1.34779 * 119.99924 * 179.97438 * 15 13 12 18 18 C 1.39807 * 119.99827 * 174.73553 * 17 15 13 19 19 C 1.39431 * 120.43188 * 327.08884 * 18 17 15 20 20 C 1.38298 * 118.42008 * 179.73278 * 19 18 17 21 21 C 1.38982 * 119.18746 * 0.54233 * 20 19 18 22 22 N 1.39886 * 119.60462 * 179.69924 * 21 20 19 23 23 C 1.35821 * 126.10078 * 180.02562 * 22 21 20 24 24 C 1.35296 * 107.61379 * 180.02562 * 23 22 21 25 25 C 1.39929 * 107.97311 * 359.97438 * 24 23 22 26 26 N 1.30841 * 108.36584 * 359.72671 * 25 24 23 27 27 N 1.32298 * 120.78830 * 359.71776 * 21 20 19 28 28 C 1.31834 * 121.72840 * 0.02562 * 27 21 20 29 29 H 1.08997 * 109.46780 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47336 * 300.00002 * 1 2 3 31 31 H 1.09000 * 109.46852 * 59.99956 * 1 2 3 32 32 H 0.97003 * 120.00342 * 180.02562 * 7 6 4 33 33 H 0.97004 * 119.99871 * 264.99821 * 12 2 1 34 34 H 0.97005 * 119.99725 * 354.74590 * 17 15 13 35 35 H 1.08000 * 120.79293 * 359.97438 * 19 18 17 36 36 H 1.07999 * 120.40850 * 180.26493 * 20 19 18 37 37 H 1.07997 * 126.19351 * 0.03516 * 23 22 21 38 38 H 1.08006 * 126.01183 * 179.97438 * 24 23 22 39 39 H 1.07998 * 125.82285 * 179.97438 * 25 24 23 40 40 H 1.07996 * 119.63136 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 1.3427 -2.1616 4.4118 10 1 3.6293 -1.7581 3.7123 11 1 2.4864 -0.1412 5.1123 12 7 2.0185 -0.6905 -1.1961 13 6 2.1471 -0.0182 -2.3571 14 8 1.8588 1.1594 -2.4115 15 6 2.6456 -0.7220 -3.5763 16 8 2.9345 -1.8997 -3.5217 17 7 2.7738 -0.0498 -4.7374 18 6 3.3431 -0.6776 -5.8494 19 6 4.3481 -1.6300 -5.6851 20 6 4.8780 -2.2290 -6.8133 21 6 4.4028 -1.8564 -8.0651 22 7 4.9371 -2.4521 -9.2125 23 6 4.5734 -2.1886 -10.4943 24 6 5.3247 -2.9717 -11.3023 25 6 6.1735 -3.7367 -10.4946 26 7 5.9470 -3.4225 -9.2448 27 7 3.4516 -0.9447 -8.1845 28 6 2.9193 -0.3562 -7.1318 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.7093 1.1619 3.4844 33 1 2.2492 -1.6317 -1.1525 34 1 2.4712 0.8696 -4.8015 35 1 4.7015 -1.8965 -4.7000 36 1 5.6546 -2.9740 -6.7231 37 1 3.8209 -1.4818 -10.8113 38 1 5.2776 -3.0012 -12.3809 39 1 6.8955 -4.4602 -10.8434 40 1 2.1448 0.3840 -7.2685 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438875632.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:18 Heat of formation + Delta-G solvation = 63.162501 kcal Electronic energy + Delta-G solvation = -26073.555550 eV Core-core repulsion = 22084.067934 eV Total energy + Delta-G solvation = -3989.487616 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.88968 -41.07314 -39.83182 -38.24304 -35.85123 -34.97162 -33.18352 -32.68230 -32.48386 -30.54577 -29.42160 -29.00326 -25.49943 -25.27206 -24.45441 -23.46572 -21.63918 -21.19965 -20.81461 -19.79118 -19.01011 -18.63234 -17.64262 -16.80401 -16.35160 -15.90238 -15.83192 -15.73248 -15.27599 -15.17747 -14.59100 -14.37675 -14.13702 -14.04035 -13.67983 -13.52189 -13.24006 -13.09557 -13.03236 -12.56411 -11.89954 -11.53274 -11.46112 -11.21780 -11.19892 -11.05517 -10.87883 -10.45909 -10.41637 -10.33188 -10.24017 -9.88300 -9.36690 -9.24293 -9.18548 -8.69959 -8.25867 -8.20194 -6.23436 -4.33376 0.25338 0.81246 1.48277 1.78352 1.87724 2.42917 2.43766 3.19935 3.27076 3.29697 3.35143 3.56729 3.83327 3.93848 4.16206 4.26935 4.42436 4.54249 4.66403 4.76847 4.96755 5.07440 5.09812 5.25949 5.32298 5.42453 5.58870 5.67730 5.82049 6.15855 6.23704 6.63616 6.72951 6.75411 6.82136 6.94169 7.01923 7.10151 7.27867 7.51293 7.54318 7.63994 7.74937 7.97834 8.31624 8.50214 8.76131 9.33912 10.82538 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.031419 B = 0.002005 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.964212 B =13961.949991 C =14665.354553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.261 3.739 3 H 0.055 0.945 4 C -0.538 4.538 5 H 0.065 0.935 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.905 3.095 9 H -0.278 1.278 10 H -0.273 1.273 11 H -0.284 1.284 12 N -0.665 5.665 13 C 0.495 3.505 14 O -0.533 6.533 15 C 0.509 3.491 16 O -0.502 6.502 17 N -0.645 5.645 18 C 0.094 3.906 19 C -0.057 4.057 20 C -0.137 4.137 21 C 0.345 3.655 22 N -0.322 5.322 23 C 0.079 3.921 24 C -0.269 4.269 25 C 0.061 3.939 26 N -0.285 5.285 27 N -0.485 5.485 28 C 0.113 3.887 29 H 0.030 0.970 30 H 0.095 0.905 31 H 0.017 0.983 32 H 0.266 0.734 33 H 0.403 0.597 34 H 0.428 0.572 35 H 0.158 0.842 36 H 0.153 0.847 37 H 0.182 0.818 38 H 0.155 0.845 39 H 0.193 0.807 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.393 -4.402 -23.877 25.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.161 3.839 3 H 0.073 0.927 4 C -0.576 4.576 5 H 0.083 0.917 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.733 3.267 9 H -0.204 1.204 10 H -0.197 1.197 11 H -0.210 1.210 12 N -0.314 5.314 13 C 0.273 3.727 14 O -0.411 6.411 15 C 0.292 3.708 16 O -0.375 6.375 17 N -0.293 5.293 18 C -0.004 4.004 19 C -0.085 4.085 20 C -0.160 4.160 21 C 0.117 3.883 22 N -0.099 5.099 23 C -0.063 4.063 24 C -0.297 4.297 25 C -0.127 4.127 26 N -0.104 5.104 27 N -0.197 5.197 28 C -0.048 4.048 29 H 0.049 0.951 30 H 0.114 0.886 31 H 0.036 0.964 32 H 0.076 0.924 33 H 0.237 0.763 34 H 0.266 0.734 35 H 0.176 0.824 36 H 0.170 0.830 37 H 0.199 0.801 38 H 0.173 0.827 39 H 0.209 0.791 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 6.267 -4.214 -23.138 24.339 hybrid contribution 0.244 -0.520 0.659 0.875 sum 6.511 -4.734 -22.479 23.877 Atomic orbital electron populations 1.22105 0.97720 0.99624 1.01285 1.19017 0.91513 0.94174 0.79245 0.92682 1.21174 1.32941 1.13537 0.89971 0.91719 1.24880 0.94667 0.94912 0.99132 1.69886 1.35625 1.22269 1.24167 0.86380 0.79269 0.79250 0.81848 1.20428 1.19743 1.20992 1.46534 1.61009 1.14560 1.09299 1.19553 0.81404 0.87294 0.84402 1.90746 1.50677 1.15107 1.84602 1.21111 0.77967 0.86916 0.84760 1.90754 1.46986 1.15161 1.84583 1.43158 1.59901 1.17570 1.08697 1.18789 0.95314 0.98118 0.88140 1.21617 0.92258 0.94254 1.00324 1.21520 1.02475 1.02212 0.89783 1.17645 0.93569 0.93082 0.84008 1.45755 1.29211 1.31256 1.03712 1.22930 1.00038 1.00119 0.83227 1.21655 1.03219 1.03798 1.01078 1.24152 0.99284 0.99288 0.90004 1.77488 1.05400 1.06083 1.21426 1.66788 1.09873 1.08747 1.34329 1.22311 0.98237 0.99168 0.85096 0.95056 0.88642 0.96435 0.92387 0.76264 0.73351 0.82427 0.82962 0.80062 0.82687 0.79072 0.80973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.26 37.16 0.34 -3.15 16 2 C 0.26 6.31 2.56 -69.09 -0.18 6.13 16 3 H 0.06 1.50 7.58 -51.93 -0.39 1.11 16 4 C -0.54 -13.77 8.73 -34.44 -0.30 -14.07 16 5 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -23.85 11.32 55.43 0.63 -23.22 16 8 Si 0.91 20.14 29.54 -169.99 -5.02 15.12 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.67 -13.46 5.06 -55.40 -0.28 -13.74 16 13 C 0.50 9.18 7.85 -11.64 -0.09 9.09 16 14 O -0.53 -10.94 16.15 5.49 0.09 -10.85 16 15 C 0.51 7.78 7.65 -11.64 -0.09 7.69 16 16 O -0.50 -8.29 14.18 5.47 0.08 -8.21 16 17 N -0.65 -7.67 5.34 -10.18 -0.05 -7.72 16 18 C 0.09 1.07 6.30 -83.55 -0.53 0.54 16 19 C -0.06 -0.67 8.76 -39.12 -0.34 -1.02 16 20 C -0.14 -1.59 9.69 -39.28 -0.38 -1.97 16 21 C 0.34 4.12 7.55 -154.29 -1.17 2.96 16 22 N -0.32 -3.71 3.81 -12.08 -0.05 -3.75 16 23 C 0.08 0.73 11.10 -16.83 -0.19 0.54 16 24 C -0.27 -2.03 10.80 -40.00 -0.43 -2.46 16 25 C 0.06 0.50 12.02 -17.34 -0.21 0.29 16 26 N -0.28 -3.22 11.83 30.64 0.36 -2.86 16 27 N -0.49 -5.40 9.85 -12.10 -0.12 -5.52 16 28 C 0.11 1.11 11.11 -17.33 -0.19 0.91 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 2.44 6.07 -51.93 -0.32 2.13 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 33 H 0.40 7.57 8.01 -40.82 -0.33 7.24 16 34 H 0.43 4.29 8.30 -40.82 -0.34 3.96 16 35 H 0.16 1.96 6.49 -52.49 -0.34 1.62 16 36 H 0.15 1.66 7.68 -52.49 -0.40 1.25 16 37 H 0.18 1.30 8.05 -52.49 -0.42 0.88 16 38 H 0.16 0.73 8.06 -52.48 -0.42 0.31 16 39 H 0.19 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 355.75 15.07 5.36 5.36 Total: -1.00 -30.92 355.75 -7.04 -37.96 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -4.20 Total: 10.29 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: -3.84 Total: 7.15 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: 0.49 Total: -56.82 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: 0.17 Total: -19.06 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.92 -7.04 -37.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438875632.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.123 kcal (2) G-P(sol) polarization free energy of solvation -30.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds