Wall clock time and date at job start Tue Mar 31 2020 05:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47443 * 2 1 4 4 C 1.50703 * 109.47055 * 240.00011 * 2 1 3 5 5 H 1.07999 * 120.00142 * 239.99838 * 4 2 1 6 6 C 1.37877 * 119.99999 * 59.99803 * 4 2 1 7 7 N 1.31513 * 120.00247 * 179.72343 * 6 4 2 8 8 Si 1.86806 * 119.99772 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.46867 * 269.72356 * 8 6 4 10 10 H 1.48499 * 109.47222 * 29.72586 * 8 6 4 11 11 H 1.48503 * 109.47003 * 149.72741 * 8 6 4 12 12 N 1.46504 * 109.47626 * 119.99996 * 2 1 3 13 13 C 1.34771 * 119.99602 * 274.99995 * 12 2 1 14 14 O 1.21358 * 120.00623 * 0.02562 * 13 12 2 15 15 C 1.49347 * 119.99466 * 179.97438 * 13 12 2 16 16 O 1.21379 * 120.00009 * 0.02562 * 15 13 12 17 17 N 1.34780 * 119.99623 * 180.02562 * 15 13 12 18 18 C 1.39813 * 119.99437 * 174.73405 * 17 15 13 19 19 C 1.39431 * 120.43445 * 327.08575 * 18 17 15 20 20 C 1.38295 * 118.42446 * 179.73250 * 19 18 17 21 21 C 1.38990 * 119.18499 * 0.54323 * 20 19 18 22 22 N 1.39882 * 119.60382 * 179.69612 * 21 20 19 23 23 C 1.35820 * 126.09765 * 180.02562 * 22 21 20 24 24 C 1.35301 * 107.61427 * 180.02562 * 23 22 21 25 25 C 1.39935 * 107.96896 * 0.02562 * 24 23 22 26 26 N 1.30838 * 108.36222 * 359.71523 * 25 24 23 27 27 N 1.32301 * 120.78737 * 359.71993 * 21 20 19 28 28 C 1.31836 * 121.72865 * 0.02562 * 27 21 20 29 29 H 1.09001 * 109.46731 * 299.99741 * 1 2 3 30 30 H 1.08997 * 109.47301 * 59.99821 * 1 2 3 31 31 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 32 32 H 0.96997 * 120.00396 * 180.27211 * 7 6 4 33 33 H 0.96993 * 119.99925 * 94.99104 * 12 2 1 34 34 H 0.97000 * 119.99928 * 354.73512 * 17 15 13 35 35 H 1.07998 * 120.78747 * 359.97438 * 19 18 17 36 36 H 1.07997 * 120.41484 * 180.26471 * 20 19 18 37 37 H 1.07999 * 126.19438 * 0.02562 * 23 22 21 38 38 H 1.07997 * 126.01494 * 179.97438 * 24 23 22 39 39 H 1.07999 * 125.81802 * 180.02562 * 25 24 23 40 40 H 1.07999 * 119.63616 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 2.1420 -0.8561 -3.5566 8 14 0.6258 1.2798 -2.6541 9 1 -0.8017 0.8740 -2.7059 10 1 0.8442 2.1742 -1.4889 11 1 0.9816 1.9990 -3.9037 12 7 2.0185 -0.6906 1.1962 13 6 2.1472 -0.0182 2.3570 14 8 1.8581 1.1592 2.4117 15 6 2.6446 -0.7224 3.5765 16 8 2.9333 -1.9001 3.5220 17 7 2.7729 -0.0501 4.7376 18 6 3.1325 -0.7319 5.9041 19 6 2.7223 -2.0490 6.1072 20 6 3.1063 -2.6856 7.2733 21 6 3.8733 -1.9929 8.2027 22 7 4.2613 -2.6263 9.3880 23 6 5.0064 -2.0771 10.3819 24 6 5.1582 -3.0147 11.3456 25 6 4.4885 -4.1715 10.9318 26 7 3.9468 -3.9387 9.7638 27 7 4.2404 -0.7416 7.9798 28 6 3.8975 -0.1042 6.8779 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.9109 -0.5225 -4.4376 33 1 2.2491 -1.6317 1.1526 34 1 2.6157 0.9067 4.7639 35 1 2.1222 -2.5611 5.3696 36 1 2.8102 -3.7070 7.4616 37 1 5.4054 -1.0737 10.3999 38 1 5.7015 -2.8920 12.2709 39 1 4.4250 -5.0970 11.4847 40 1 4.2154 0.9174 6.7309 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438875633.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:22 Heat of formation + Delta-G solvation = 72.278643 kcal Electronic energy + Delta-G solvation = -26139.856899 eV Core-core repulsion = 22150.764589 eV Total energy + Delta-G solvation = -3989.092310 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.91961 -41.14432 -39.92820 -38.40913 -35.95818 -35.16117 -33.21526 -32.71884 -32.50153 -30.57259 -30.19443 -29.19897 -25.63965 -25.23161 -24.50231 -23.56482 -21.69932 -21.22667 -20.87736 -19.93882 -19.11413 -18.67929 -17.67917 -16.92981 -16.55355 -16.03094 -15.95076 -15.74743 -15.60267 -15.17773 -14.64190 -14.50034 -14.19751 -14.10340 -13.74358 -13.51444 -13.39217 -13.13713 -13.06581 -13.01515 -12.33739 -12.01225 -11.62493 -11.55851 -11.43006 -11.22521 -10.92385 -10.46433 -10.31545 -10.28312 -9.95834 -9.78182 -9.40087 -9.39340 -9.30876 -8.90308 -8.48804 -8.26085 -6.29822 -4.34484 0.21355 0.77583 1.39947 1.75503 1.81820 2.33085 2.41250 3.15478 3.26577 3.28276 3.29766 3.46589 3.72287 3.89184 4.13320 4.21748 4.37812 4.50281 4.62671 4.70022 4.82064 5.03555 5.04838 5.22218 5.30004 5.38570 5.57047 5.63266 5.77223 6.12453 6.13852 6.18095 6.19786 6.36527 6.62204 6.68737 6.72812 6.91604 6.99261 7.02337 7.30502 7.46998 7.52003 7.89401 8.29186 8.37781 8.69614 9.27985 10.82004 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.039101 B = 0.002009 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.919731 B =13930.955799 C =14274.824385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.235 3.765 3 H 0.055 0.945 4 C -0.541 4.541 5 H 0.084 0.916 6 C 0.080 3.920 7 N -0.887 5.887 8 Si 0.885 3.115 9 H -0.275 1.275 10 H -0.262 1.262 11 H -0.292 1.292 12 N -0.659 5.659 13 C 0.498 3.502 14 O -0.534 6.534 15 C 0.510 3.490 16 O -0.498 6.498 17 N -0.645 5.645 18 C 0.093 3.907 19 C -0.056 4.056 20 C -0.137 4.137 21 C 0.346 3.654 22 N -0.322 5.322 23 C 0.079 3.921 24 C -0.269 4.269 25 C 0.062 3.938 26 N -0.285 5.285 27 N -0.485 5.485 28 C 0.114 3.886 29 H 0.037 0.963 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.269 0.731 33 H 0.409 0.591 34 H 0.427 0.573 35 H 0.158 0.842 36 H 0.153 0.847 37 H 0.182 0.818 38 H 0.156 0.844 39 H 0.193 0.807 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.993 -1.132 27.046 27.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.132 3.868 3 H 0.073 0.927 4 C -0.579 4.579 5 H 0.101 0.899 6 C -0.124 4.124 7 N -0.523 5.523 8 Si 0.715 3.285 9 H -0.202 1.202 10 H -0.186 1.186 11 H -0.219 1.219 12 N -0.308 5.308 13 C 0.277 3.723 14 O -0.412 6.412 15 C 0.293 3.707 16 O -0.370 6.370 17 N -0.293 5.293 18 C -0.005 4.005 19 C -0.084 4.084 20 C -0.160 4.160 21 C 0.119 3.881 22 N -0.100 5.100 23 C -0.063 4.063 24 C -0.297 4.297 25 C -0.127 4.127 26 N -0.104 5.104 27 N -0.197 5.197 28 C -0.047 4.047 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.245 0.755 34 H 0.266 0.734 35 H 0.176 0.824 36 H 0.171 0.829 37 H 0.199 0.801 38 H 0.173 0.827 39 H 0.210 0.790 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 2.748 -1.152 26.310 26.478 hybrid contribution -0.453 0.675 -0.157 0.828 sum 2.295 -0.477 26.153 26.258 Atomic orbital electron populations 1.22470 0.98607 1.01359 0.99686 1.19346 0.90608 0.94811 0.82035 0.92725 1.20978 1.33806 1.14836 0.88242 0.89850 1.24823 0.95440 0.96723 0.95424 1.69855 1.44362 1.39977 0.98115 0.86883 0.80566 0.83445 0.77647 1.20161 1.18638 1.21948 1.46154 1.61185 1.14853 1.08566 1.19589 0.81088 0.87221 0.84444 1.90742 1.50776 1.15103 1.84611 1.20924 0.77866 0.87261 0.84643 1.90776 1.45844 1.15615 1.84791 1.43120 1.67168 1.13376 1.05603 1.18774 0.98863 0.94230 0.88638 1.21606 0.97043 0.93406 0.96347 1.21525 0.99349 1.02243 0.92886 1.17653 0.96045 0.89102 0.85349 1.45751 1.40385 1.10225 1.13622 1.22934 0.94917 1.00458 0.88006 1.21661 1.11071 0.93886 1.03082 1.24158 0.95660 0.99854 0.93006 1.77484 1.23851 0.92977 1.16077 1.66795 1.23080 1.07462 1.22403 1.22314 0.94046 1.00346 0.87989 0.94351 0.92960 0.92404 0.92086 0.75493 0.73369 0.82437 0.82921 0.80053 0.82669 0.79047 0.80967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 8.96 37.16 0.33 -3.07 16 2 C 0.23 5.28 2.15 -69.08 -0.15 5.14 16 3 H 0.06 1.32 6.63 -51.93 -0.34 0.98 16 4 C -0.54 -14.13 9.31 -34.44 -0.32 -14.45 16 5 H 0.08 2.32 7.98 -52.49 -0.42 1.90 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 7 N -0.89 -25.60 13.96 55.43 0.77 -24.82 16 8 Si 0.89 20.74 24.37 -169.99 -4.14 16.59 16 9 H -0.27 -6.23 6.88 56.52 0.39 -5.84 16 10 H -0.26 -5.98 6.52 56.52 0.37 -5.62 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 N -0.66 -12.64 5.06 -55.39 -0.28 -12.92 16 13 C 0.50 8.64 7.85 -11.64 -0.09 8.55 16 14 O -0.53 -10.13 16.15 5.49 0.09 -10.04 16 15 C 0.51 7.37 7.65 -11.63 -0.09 7.29 16 16 O -0.50 -7.93 14.18 5.47 0.08 -7.85 16 17 N -0.64 -7.18 5.34 -10.18 -0.05 -7.23 16 18 C 0.09 1.00 6.30 -83.55 -0.53 0.47 16 19 C -0.06 -0.64 8.76 -39.12 -0.34 -0.98 16 20 C -0.14 -1.54 9.69 -39.28 -0.38 -1.92 16 21 C 0.35 4.03 7.55 -154.29 -1.17 2.86 16 22 N -0.32 -3.63 3.81 -12.08 -0.05 -3.67 16 23 C 0.08 0.71 11.10 -16.83 -0.19 0.52 16 24 C -0.27 -1.98 10.80 -39.99 -0.43 -2.41 16 25 C 0.06 0.49 12.02 -17.34 -0.21 0.28 16 26 N -0.28 -3.15 11.83 30.64 0.36 -2.79 16 27 N -0.49 -5.24 9.85 -12.10 -0.12 -5.36 16 28 C 0.11 1.07 11.11 -17.33 -0.19 0.88 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 1.13 3.28 -51.93 -0.17 0.96 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.41 7.45 8.01 -40.82 -0.33 7.12 16 34 H 0.43 3.92 8.30 -40.82 -0.34 3.59 16 35 H 0.16 1.85 6.49 -52.49 -0.34 1.51 16 36 H 0.15 1.60 7.68 -52.49 -0.40 1.20 16 37 H 0.18 1.27 8.05 -52.49 -0.42 0.84 16 38 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.19 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 348.92 15.07 5.26 5.26 Total: -1.00 -32.13 348.92 -5.99 -38.12 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -4.06 Total: 9.48 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: -3.85 Total: 5.24 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: 0.64 Total: -56.79 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: 0.17 Total: -17.89 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.14 Total: 16.59 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.13 -5.99 -38.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438875633.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.395 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds