Wall clock time and date at job start Tue Mar 31 2020 05:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42898 * 113.99840 * 2 1 4 4 N 1.46500 * 109.47114 * 180.02562 * 3 2 1 5 5 N 1.40084 * 126.03708 * 270.28682 * 4 3 2 6 6 C 1.30834 * 108.20770 * 180.17238 * 5 4 3 7 7 C 1.39876 * 108.20073 * 359.58566 * 6 5 4 8 8 C 1.34947 * 126.04040 * 90.00132 * 4 3 2 9 9 S 1.76202 * 126.12611 * 0.03065 * 8 4 3 10 10 O 1.42094 * 106.40374 * 263.52877 * 9 8 4 11 11 O 1.42109 * 106.40110 * 36.44886 * 9 8 4 12 12 N 1.65603 * 107.21726 * 149.98417 * 9 8 4 13 13 C 1.46502 * 119.99391 * 90.00336 * 12 9 8 14 14 C 1.50705 * 109.47022 * 95.00078 * 13 12 9 15 15 H 1.08003 * 119.99772 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99747 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99928 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99744 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47478 * 0.02562 * 18 16 14 20 20 H 1.48492 * 109.47294 * 120.00382 * 18 16 14 21 21 H 1.48498 * 109.47237 * 240.00497 * 18 16 14 22 22 C 1.46492 * 120.00319 * 270.00028 * 12 9 8 23 23 C 1.53000 * 109.47058 * 94.99986 * 22 12 9 24 24 C 1.53000 * 117.50027 * 243.74832 * 23 22 12 25 25 C 1.52998 * 117.49808 * 175.09003 * 23 22 12 26 26 H 1.08994 * 109.47000 * 60.00292 * 1 2 3 27 27 H 1.09001 * 109.46445 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46801 * 300.00199 * 1 2 3 29 29 H 1.08996 * 109.47660 * 60.00031 * 3 2 1 30 30 H 1.09011 * 109.47126 * 299.99861 * 3 2 1 31 31 H 1.08002 * 125.90318 * 179.85840 * 6 5 4 32 32 H 1.07992 * 126.04019 * 180.28605 * 7 6 5 33 33 H 1.09003 * 109.46964 * 214.99627 * 13 12 9 34 34 H 1.08995 * 109.47635 * 335.00207 * 13 12 9 35 35 H 0.97001 * 119.99457 * 179.97438 * 17 16 14 36 36 H 1.08994 * 109.47455 * 215.00237 * 22 12 9 37 37 H 1.09007 * 109.47179 * 334.99998 * 22 12 9 38 38 H 1.08998 * 115.55006 * 29.41632 * 23 22 12 39 39 H 1.08999 * 117.49747 * 0.02562 * 24 23 22 40 40 H 1.09002 * 117.49901 * 145.01880 * 24 23 22 41 41 H 1.09002 * 117.49637 * 214.98200 * 25 23 22 42 42 H 1.09004 * 117.50132 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 7 3.4707 1.1898 -0.0006 5 7 4.2923 1.1189 1.1318 6 6 5.5342 1.0264 0.7307 7 6 5.5426 1.0258 -0.6680 8 6 4.2617 1.1274 -1.0921 9 16 3.7232 1.1711 -2.7693 10 8 3.6388 -0.1807 -3.1990 11 8 2.6243 2.0711 -2.8145 12 7 4.9357 1.8688 -3.6555 13 6 5.9870 1.0343 -4.2426 14 6 5.6267 0.7011 -5.6675 15 1 4.7065 1.0734 -6.0930 16 6 6.4719 -0.0789 -6.4279 17 7 7.5922 -0.5326 -5.9096 18 14 6.0250 -0.4924 -8.1939 19 1 4.7225 0.1342 -8.5347 20 1 7.0767 0.0261 -9.1051 21 1 5.9208 -1.9659 -8.3461 22 6 4.9572 3.3202 -3.8523 23 6 5.8557 3.9651 -2.7951 24 6 5.1984 4.9191 -1.7959 25 6 6.1022 5.4714 -2.9010 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6887 1.8464 0.8899 30 1 1.6886 1.8464 -0.8901 31 1 6.4025 0.9575 1.3692 32 1 6.4170 0.9563 -1.2981 33 1 6.9331 1.5752 -4.2241 34 1 6.0836 0.1134 -3.6676 35 1 8.1866 -1.0817 -6.4445 36 1 5.3447 3.5465 -4.8456 37 1 3.9453 3.7146 -3.7586 38 1 6.6762 3.3450 -2.4339 39 1 4.1256 5.0871 -1.8914 40 1 5.5866 4.9270 -0.7774 41 1 7.0847 5.8423 -2.6091 42 1 5.6245 6.0029 -3.7240 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440071101.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:48 Heat of formation + Delta-G solvation = 2.948990 kcal Electronic energy + Delta-G solvation = -27597.783585 eV Core-core repulsion = 23708.836116 eV Total energy + Delta-G solvation = -3888.947469 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.13234 -38.06055 -37.72965 -36.78511 -35.43218 -34.96825 -32.61951 -32.39572 -30.36117 -27.91614 -27.36138 -25.54256 -25.41407 -22.65293 -22.17428 -22.03472 -21.33999 -20.29039 -18.71398 -17.87416 -17.06935 -16.95084 -16.43889 -16.07520 -15.79600 -15.51192 -15.00227 -14.59434 -14.50095 -14.23398 -14.20066 -13.76680 -13.59894 -13.29432 -12.62160 -12.57336 -12.41523 -11.96820 -11.79043 -11.64088 -11.57278 -11.46084 -11.33425 -11.25934 -11.16757 -10.81023 -10.77123 -10.62791 -10.26474 -10.11048 -10.02169 -9.78025 -9.76422 -9.64476 -8.85243 -8.48541 -8.24919 -6.10534 -4.14614 0.69680 1.32535 2.15951 2.70803 3.29844 3.35551 3.38213 3.43576 3.72703 3.96104 4.00814 4.39841 4.42436 4.78630 4.88978 4.95483 5.07379 5.08557 5.08968 5.12823 5.19803 5.25722 5.40818 5.44431 5.46247 5.56717 5.68010 5.75756 5.85158 6.01453 6.04826 6.23797 6.43620 6.47593 6.54128 6.59018 6.88977 7.10563 7.27099 7.46219 7.48737 7.86406 8.12779 8.87326 9.50893 10.98301 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.011890 B = 0.005092 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.417263 B = 5497.191953 C = 6498.704051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.405 6.405 3 C 0.280 3.720 4 N -0.315 5.315 5 N -0.260 5.260 6 C 0.038 3.962 7 C -0.154 4.154 8 C -0.467 4.467 9 S 2.697 3.303 10 O -0.921 6.921 11 O -0.972 6.972 12 N -0.965 5.965 13 C 0.251 3.749 14 C -0.530 4.530 15 H 0.063 0.937 16 C 0.064 3.936 17 N -0.893 5.893 18 Si 0.897 3.103 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.282 1.282 22 C 0.150 3.850 23 C -0.171 4.171 24 C -0.188 4.188 25 C -0.172 4.172 26 H 0.053 0.947 27 H 0.096 0.904 28 H 0.048 0.952 29 H 0.094 0.906 30 H 0.114 0.886 31 H 0.193 0.807 32 H 0.165 0.835 33 H 0.044 0.956 34 H 0.042 0.958 35 H 0.264 0.736 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.778 8.758 11.391 15.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.323 6.323 3 C 0.121 3.879 4 N -0.103 5.103 5 N -0.083 5.083 6 C -0.149 4.149 7 C -0.184 4.184 8 C -0.671 4.671 9 S 2.778 3.222 10 O -0.910 6.910 11 O -0.962 6.962 12 N -0.806 5.806 13 C 0.129 3.871 14 C -0.570 4.570 15 H 0.081 0.919 16 C -0.138 4.138 17 N -0.532 5.532 18 Si 0.724 3.276 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.208 1.208 22 C 0.024 3.976 23 C -0.191 4.191 24 C -0.225 4.225 25 C -0.210 4.210 26 H 0.072 0.928 27 H 0.115 0.885 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.131 0.869 31 H 0.210 0.790 32 H 0.183 0.817 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.116 0.884 37 H 0.100 0.900 38 H 0.130 0.870 39 H 0.112 0.888 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.242 8.207 12.096 16.781 hybrid contribution 0.922 -0.143 -0.865 1.272 sum -7.321 8.064 11.232 15.645 Atomic orbital electron populations 1.22810 0.78438 1.03958 1.00790 1.87892 1.21358 1.27444 1.95624 1.22870 0.74154 0.86087 1.04838 1.48004 1.05162 1.55076 1.02046 1.77178 1.02227 1.19947 1.08980 1.24110 0.95248 1.00503 0.95031 1.21652 0.95677 1.05606 0.95504 1.34315 1.00622 1.14594 1.17595 1.02323 0.73550 0.74195 0.72113 1.93669 1.84908 1.34125 1.78298 1.93458 1.50081 1.66137 1.86525 1.57328 1.45965 1.14586 1.62686 1.19273 0.85089 0.88973 0.93728 1.21464 1.06642 1.32138 0.96714 0.91901 1.24909 0.94817 0.95326 0.98780 1.69918 1.11201 1.35099 1.36980 0.86456 0.78511 0.78406 0.84186 1.19589 1.20937 1.20765 1.20905 0.98997 0.78766 0.98949 1.22999 1.02705 0.92544 1.00831 1.23072 0.99002 1.05197 0.95203 1.22877 1.00866 0.96139 1.01132 0.92848 0.88534 0.93330 0.88784 0.86894 0.78988 0.81744 0.93814 0.93999 0.92636 0.88351 0.89966 0.87007 0.88816 0.89328 0.88992 0.88695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 11.01 101.05 1.11 1.48 16 2 O -0.41 -6.24 10.93 -35.23 -0.39 -6.62 16 3 C 0.28 4.11 7.04 59.85 0.42 4.53 16 4 N -0.32 -5.41 3.88 -65.26 -0.25 -5.66 16 5 N -0.26 -4.26 12.58 30.63 0.39 -3.88 16 6 C 0.04 0.54 12.03 -17.36 -0.21 0.33 16 7 C -0.15 -2.47 10.67 -40.01 -0.43 -2.90 16 8 C -0.47 -8.40 6.90 -17.23 -0.12 -8.52 16 9 S 2.70 54.05 5.56 -107.50 -0.60 53.45 16 10 O -0.92 -22.39 16.99 -57.17 -0.97 -23.36 16 11 O -0.97 -18.71 14.34 -57.17 -0.82 -19.53 16 12 N -0.96 -18.89 2.70 -115.66 -0.31 -19.20 16 13 C 0.25 5.87 5.10 -5.19 -0.03 5.84 16 14 C -0.53 -14.15 9.38 -34.44 -0.32 -14.48 16 15 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -25.12 13.29 55.43 0.74 -24.39 16 18 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C 0.15 2.44 5.96 -4.05 -0.02 2.42 16 23 C -0.17 -2.37 6.01 -90.62 -0.54 -2.92 16 24 C -0.19 -2.30 10.18 -26.70 -0.27 -2.57 16 25 C -0.17 -1.99 10.25 -26.70 -0.27 -2.26 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.11 1.61 5.82 -51.92 -0.30 1.31 16 31 H 0.19 1.92 8.06 -52.49 -0.42 1.49 16 32 H 0.17 2.43 8.06 -52.49 -0.42 2.01 16 33 H 0.04 1.01 8.11 -51.93 -0.42 0.59 16 34 H 0.04 1.05 7.61 -51.93 -0.40 0.66 16 35 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.10 1.61 8.11 -51.93 -0.42 1.19 16 37 H 0.08 1.26 6.65 -51.93 -0.35 0.92 16 38 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 39 H 0.09 1.14 8.03 -51.93 -0.42 0.72 16 40 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 372.81 15.07 5.62 5.62 Total: -1.00 -33.80 372.81 -8.48 -42.28 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -6.07 Total: 2.50 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: -0.78 Total: -17.37 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 0.56 Total: -53.13 kcal Atomic # 8 Polarization: -47.33 SS G_CDS: -2.18 Total: -49.51 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 54.05 SS G_CDS: -0.60 Total: 53.45 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.80 -8.48 -42.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440071101.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.228 kcal (2) G-P(sol) polarization free energy of solvation -33.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds