Wall clock time and date at job start Tue Mar 31 2020 05:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35674 * 117.00043 * 2 1 4 4 C 1.38915 * 119.68760 * 185.11795 * 3 2 1 5 5 C 1.38378 * 119.11536 * 180.02562 * 4 3 2 6 6 C 1.38822 * 118.48507 * 0.02562 * 5 4 3 7 7 C 1.38050 * 119.29106 * 359.97438 * 6 5 4 8 8 C 1.50695 * 119.58819 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.47149 * 124.43561 * 8 7 6 10 10 N 1.46507 * 109.46810 * 184.96411 * 9 8 7 11 11 S 1.65599 * 119.99815 * 95.34618 * 10 9 8 12 12 O 1.42100 * 106.39733 * 180.64987 * 11 10 9 13 13 O 1.42094 * 106.40317 * 313.56596 * 11 10 9 14 14 N 1.65598 * 107.21917 * 67.11308 * 11 10 9 15 15 C 1.46502 * 120.00473 * 94.03417 * 14 11 10 16 16 C 1.46502 * 119.99551 * 274.03174 * 14 11 10 17 17 C 1.50700 * 109.47282 * 100.15328 * 16 14 11 18 18 H 1.08001 * 119.99568 * 4.97598 * 17 16 14 19 19 C 1.37877 * 120.00416 * 184.98642 * 17 16 14 20 20 N 1.31516 * 119.99563 * 5.06734 * 19 17 16 21 21 Si 1.86800 * 120.00099 * 185.07588 * 19 17 16 22 22 H 1.48497 * 109.46960 * 4.99669 * 21 19 17 23 23 H 1.48502 * 109.46972 * 124.99489 * 21 19 17 24 24 H 1.48498 * 109.46809 * 244.99877 * 21 19 17 25 25 N 1.31967 * 120.83242 * 0.28163 * 7 6 5 26 26 H 1.09000 * 109.47366 * 304.82877 * 1 2 3 27 27 H 1.08997 * 109.46947 * 64.82769 * 1 2 3 28 28 H 1.09003 * 109.46866 * 184.82663 * 1 2 3 29 29 H 1.08000 * 120.44120 * 0.04422 * 4 3 2 30 30 H 1.08000 * 120.75577 * 179.97438 * 5 4 3 31 31 H 1.08000 * 120.36098 * 180.02562 * 6 5 4 32 32 H 1.09005 * 109.46995 * 4.43974 * 8 7 6 33 33 H 1.08996 * 109.47599 * 244.44212 * 8 7 6 34 34 H 1.08993 * 109.46991 * 64.96484 * 9 8 7 35 35 H 1.09000 * 109.47013 * 304.96003 * 9 8 7 36 36 H 0.96997 * 119.99489 * 275.06556 * 10 9 8 37 37 H 1.08998 * 109.47089 * 89.99559 * 15 14 11 38 38 H 1.08997 * 109.47074 * 210.00174 * 15 14 11 39 39 H 1.09006 * 109.46598 * 330.00087 * 15 14 11 40 40 H 1.09011 * 109.47015 * 220.14644 * 16 14 11 41 41 H 1.08999 * 109.47639 * 340.14753 * 16 14 11 42 42 H 0.97006 * 119.99569 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4284 1.2762 -0.1077 5 6 4.0443 2.5153 -0.1059 6 6 3.2508 3.6490 0.0046 7 6 1.8815 3.5075 0.1081 8 6 1.0138 4.7336 0.2289 9 6 -0.0383 4.7253 -0.8819 10 7 -0.8051 5.9729 -0.8374 11 16 -0.3751 7.2441 -1.8077 12 8 -1.2898 8.2936 -1.5228 13 8 1.0333 7.3855 -1.6832 14 7 -0.6626 6.7854 -3.3727 15 6 -1.9369 7.1217 -4.0125 16 6 0.3576 6.0432 -4.1175 17 6 0.0108 4.5766 -4.1193 18 1 -0.9200 4.2414 -3.6861 19 6 0.8818 3.6629 -4.6736 20 7 2.0579 4.0570 -5.1107 21 14 0.3914 1.8651 -4.8039 22 1 -1.0154 1.7022 -4.3573 23 1 0.5177 1.4186 -6.2146 24 1 1.2819 1.0455 -3.9435 25 7 1.3232 2.3117 0.1086 26 1 -0.3634 0.5869 0.8436 27 1 -0.3633 0.4371 -0.9301 28 1 -0.3633 -1.0241 0.0865 29 1 4.0152 0.3734 -0.1919 30 1 5.1180 2.5984 -0.1878 31 1 3.6997 4.6313 0.0088 32 1 1.6320 5.6267 0.1372 33 1 0.5175 4.7334 1.1994 34 1 -0.7112 3.8800 -0.7387 35 1 0.4557 4.6368 -1.8495 36 1 -1.5671 6.0528 -0.2426 37 1 -1.8519 8.0907 -4.5043 38 1 -2.1848 6.3597 -4.7513 39 1 -2.7221 7.1651 -3.2575 40 1 0.3959 6.4086 -5.1439 41 1 1.3290 6.1863 -3.6444 42 1 2.6706 3.4142 -5.5010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000441532939.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:04 Heat of formation + Delta-G solvation = -80.811275 kcal Electronic energy + Delta-G solvation = -27475.474785 eV Core-core repulsion = 23582.895198 eV Total energy + Delta-G solvation = -3892.579587 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.43210 -37.91515 -36.68648 -35.64642 -35.29222 -35.18997 -32.55350 -32.49677 -31.34328 -28.53167 -27.81930 -26.82932 -25.14378 -23.56275 -22.74107 -22.30577 -21.23549 -18.88124 -18.04115 -17.34519 -16.75736 -16.58820 -16.42390 -15.89536 -15.76954 -15.64706 -14.98122 -14.40160 -14.30898 -13.88971 -13.80418 -13.39357 -13.27421 -12.87167 -12.83321 -12.32202 -12.26235 -12.14913 -12.06220 -11.71049 -11.63528 -11.50677 -11.37713 -11.19946 -11.14151 -11.01401 -10.78706 -10.64106 -10.30957 -10.13312 -9.81540 -9.68251 -9.42727 -9.09479 -8.55412 -8.18385 -8.06533 -6.18555 -4.24295 1.28868 1.39149 1.52977 3.19925 3.24850 3.29382 3.29982 3.56857 3.97931 4.18586 4.30867 4.39622 4.91335 5.09514 5.13748 5.24145 5.28671 5.36426 5.43838 5.48591 5.52426 5.58215 5.66580 5.73081 5.76144 6.01058 6.08509 6.09867 6.17074 6.28802 6.37989 6.48123 6.59623 6.63939 6.71893 7.26061 7.33692 7.41289 7.45042 7.63776 7.79367 8.08830 8.10400 8.81032 9.41276 10.88411 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.011145 B = 0.005649 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.810953 B = 4955.858569 C = 6120.528789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.312 6.312 3 C 0.320 3.680 4 C -0.200 4.200 5 C -0.038 4.038 6 C -0.198 4.198 7 C 0.183 3.817 8 C -0.093 4.093 9 C 0.122 3.878 10 N -1.126 6.126 11 S 2.786 3.214 12 O -1.004 7.004 13 O -0.979 6.979 14 N -0.998 5.998 15 C 0.107 3.893 16 C 0.241 3.759 17 C -0.543 4.543 18 H 0.064 0.936 19 C 0.070 3.930 20 N -0.881 5.881 21 Si 0.883 3.117 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.281 1.281 25 N -0.534 5.534 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.136 0.864 30 H 0.140 0.860 31 H 0.139 0.861 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.119 0.881 36 H 0.406 0.594 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.033 0.967 41 H 0.057 0.943 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.800 -3.320 9.995 10.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.220 6.220 3 C 0.141 3.859 4 C -0.220 4.220 5 C -0.064 4.064 6 C -0.218 4.218 7 C 0.047 3.953 8 C -0.133 4.133 9 C -0.005 4.005 10 N -0.883 5.883 11 S 2.793 3.207 12 O -0.988 6.988 13 O -0.962 6.962 14 N -0.841 5.841 15 C -0.040 4.040 16 C 0.119 3.881 17 C -0.582 4.582 18 H 0.082 0.918 19 C -0.134 4.134 20 N -0.519 5.519 21 Si 0.711 3.289 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.207 1.207 25 N -0.258 5.258 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.110 0.890 29 H 0.154 0.846 30 H 0.157 0.843 31 H 0.157 0.843 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.137 0.863 36 H 0.237 0.763 37 H 0.062 0.938 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.051 0.949 41 H 0.075 0.925 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.918 -2.914 10.113 10.698 hybrid contribution -0.064 -1.427 -0.220 1.446 sum -1.982 -4.341 9.893 10.984 Atomic orbital electron populations 1.22842 0.77491 1.02552 1.02746 1.86196 1.22782 1.24847 1.88151 1.19744 0.89367 0.84568 0.92183 1.20973 0.92202 0.99489 1.09371 1.21353 1.00437 0.91229 0.93373 1.21872 0.94210 1.00141 1.05558 1.20735 0.91810 0.91199 0.91600 1.21148 0.97609 0.93806 1.00717 1.21424 0.92895 0.85318 1.00883 1.55913 1.43541 1.31114 1.57687 1.01760 0.73409 0.72678 0.72828 1.93537 1.66068 1.54118 1.85118 1.93571 1.31145 1.85592 1.85924 1.57616 1.24993 1.71671 1.29773 1.21208 0.84343 1.00107 0.98347 1.19265 0.85991 0.90145 0.92739 1.21550 1.05157 0.91730 1.39740 0.91756 1.24918 0.94587 0.98733 0.95161 1.69946 1.07023 1.34943 1.39956 0.86662 0.78979 0.85350 0.77927 1.19551 1.20839 1.20666 1.67016 1.40801 0.98393 1.19611 0.91986 0.92346 0.89029 0.84586 0.84256 0.84270 0.88844 0.90218 0.90393 0.86339 0.76312 0.93838 0.90787 0.92755 0.94921 0.92535 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.49 101.05 1.06 1.57 16 2 O -0.31 -4.94 10.48 -18.72 -0.20 -5.14 16 3 C 0.32 5.40 7.48 -17.12 -0.13 5.28 16 4 C -0.20 -2.98 10.04 -39.28 -0.39 -3.38 16 5 C -0.04 -0.54 10.17 -39.31 -0.40 -0.94 16 6 C -0.20 -3.06 9.71 -39.43 -0.38 -3.44 16 7 C 0.18 3.09 6.16 -82.61 -0.51 2.58 16 8 C -0.09 -1.47 5.93 -27.89 -0.17 -1.63 16 9 C 0.12 2.12 6.01 -4.04 -0.02 2.10 16 10 N -1.13 -18.16 5.85 -10.61 -0.06 -18.22 16 11 S 2.79 53.96 6.04 -107.50 -0.65 53.31 16 12 O -1.00 -20.26 17.08 -57.17 -0.98 -21.24 16 13 O -0.98 -21.61 15.97 -57.17 -0.91 -22.52 16 14 N -1.00 -20.30 3.24 -123.04 -0.40 -20.70 16 15 C 0.11 1.83 10.28 59.85 0.62 2.45 16 16 C 0.24 5.79 5.07 -5.19 -0.03 5.77 16 17 C -0.54 -13.61 7.04 -34.44 -0.24 -13.86 16 18 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 19 C 0.07 1.84 5.45 -17.82 -0.10 1.75 16 20 N -0.88 -24.40 13.28 55.43 0.74 -23.66 16 21 Si 0.88 20.55 29.54 -169.99 -5.02 15.53 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 N -0.53 -9.25 8.76 -9.55 -0.08 -9.33 16 26 H 0.06 0.77 7.89 -51.93 -0.41 0.36 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.14 1.92 7.94 -52.49 -0.42 1.51 16 32 H 0.09 1.50 7.36 -51.93 -0.38 1.12 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.08 1.29 8.09 -51.93 -0.42 0.87 16 35 H 0.12 2.52 4.99 -51.93 -0.26 2.26 16 36 H 0.41 5.26 8.96 -34.47 -0.31 4.95 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 39 H 0.05 0.82 7.68 -51.93 -0.40 0.43 16 40 H 0.03 0.82 8.14 -51.92 -0.42 0.40 16 41 H 0.06 1.49 6.90 -51.93 -0.36 1.13 16 42 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 366.22 15.07 5.52 5.52 Total: -1.00 -31.94 366.22 -8.62 -40.56 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -5.88 Total: 7.65 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -0.69 Total: -1.76 kcal Atomic # 7 Polarization: -72.10 SS G_CDS: 0.19 Total: -71.91 kcal Atomic # 8 Polarization: -46.81 SS G_CDS: -2.09 Total: -48.90 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 53.96 SS G_CDS: -0.65 Total: 53.31 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.94 -8.62 -40.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000441532939.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.253 kcal (2) G-P(sol) polarization free energy of solvation -31.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds