Wall clock time and date at job start Tue Mar 31 2020 05:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35674 * 117.00043 * 2 1 4 4 C 1.38915 * 119.68760 * 185.11795 * 3 2 1 5 5 C 1.38378 * 119.11536 * 180.02562 * 4 3 2 6 6 C 1.38822 * 118.48507 * 0.02562 * 5 4 3 7 7 C 1.38050 * 119.29106 * 359.97438 * 6 5 4 8 8 C 1.50695 * 119.58819 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.47149 * 124.43561 * 8 7 6 10 10 N 1.46507 * 109.46810 * 184.96411 * 9 8 7 11 11 S 1.65599 * 119.99815 * 95.34618 * 10 9 8 12 12 O 1.42100 * 106.39733 * 180.64987 * 11 10 9 13 13 O 1.42094 * 106.40317 * 313.56596 * 11 10 9 14 14 N 1.65598 * 107.21917 * 67.11308 * 11 10 9 15 15 C 1.46502 * 120.00473 * 94.03417 * 14 11 10 16 16 C 1.46502 * 119.99551 * 274.03174 * 14 11 10 17 17 C 1.50700 * 109.47282 * 100.15328 * 16 14 11 18 18 H 1.08001 * 119.99568 * 4.97598 * 17 16 14 19 19 C 1.37877 * 120.00416 * 184.98642 * 17 16 14 20 20 N 1.31516 * 119.99563 * 5.06734 * 19 17 16 21 21 Si 1.86800 * 120.00099 * 185.07588 * 19 17 16 22 22 H 1.48497 * 109.46960 * 4.99669 * 21 19 17 23 23 H 1.48502 * 109.46972 * 124.99489 * 21 19 17 24 24 H 1.48498 * 109.46809 * 244.99877 * 21 19 17 25 25 N 1.31967 * 120.83242 * 0.28163 * 7 6 5 26 26 H 1.09000 * 109.47366 * 304.82877 * 1 2 3 27 27 H 1.08997 * 109.46947 * 64.82769 * 1 2 3 28 28 H 1.09003 * 109.46866 * 184.82663 * 1 2 3 29 29 H 1.08000 * 120.44120 * 0.04422 * 4 3 2 30 30 H 1.08000 * 120.75577 * 179.97438 * 5 4 3 31 31 H 1.08000 * 120.36098 * 180.02562 * 6 5 4 32 32 H 1.09005 * 109.46995 * 4.43974 * 8 7 6 33 33 H 1.08996 * 109.47599 * 244.44212 * 8 7 6 34 34 H 1.08993 * 109.46991 * 64.96484 * 9 8 7 35 35 H 1.09000 * 109.47013 * 304.96003 * 9 8 7 36 36 H 0.96997 * 119.99489 * 275.06556 * 10 9 8 37 37 H 1.08998 * 109.47089 * 89.99559 * 15 14 11 38 38 H 1.08997 * 109.47074 * 210.00174 * 15 14 11 39 39 H 1.09006 * 109.46598 * 330.00087 * 15 14 11 40 40 H 1.09011 * 109.47015 * 220.14644 * 16 14 11 41 41 H 1.08999 * 109.47639 * 340.14753 * 16 14 11 42 42 H 0.97006 * 119.99569 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4284 1.2762 -0.1077 5 6 4.0443 2.5153 -0.1059 6 6 3.2508 3.6490 0.0046 7 6 1.8815 3.5075 0.1081 8 6 1.0138 4.7336 0.2289 9 6 -0.0383 4.7253 -0.8819 10 7 -0.8051 5.9729 -0.8374 11 16 -0.3751 7.2441 -1.8077 12 8 -1.2898 8.2936 -1.5228 13 8 1.0333 7.3855 -1.6832 14 7 -0.6626 6.7854 -3.3727 15 6 -1.9369 7.1217 -4.0125 16 6 0.3576 6.0432 -4.1175 17 6 0.0108 4.5766 -4.1193 18 1 -0.9200 4.2414 -3.6861 19 6 0.8818 3.6629 -4.6736 20 7 2.0579 4.0570 -5.1107 21 14 0.3914 1.8651 -4.8039 22 1 -1.0154 1.7022 -4.3573 23 1 0.5177 1.4186 -6.2146 24 1 1.2819 1.0455 -3.9435 25 7 1.3232 2.3117 0.1086 26 1 -0.3634 0.5869 0.8436 27 1 -0.3633 0.4371 -0.9301 28 1 -0.3633 -1.0241 0.0865 29 1 4.0152 0.3734 -0.1919 30 1 5.1180 2.5984 -0.1878 31 1 3.6997 4.6313 0.0088 32 1 1.6320 5.6267 0.1372 33 1 0.5175 4.7334 1.1994 34 1 -0.7112 3.8800 -0.7387 35 1 0.4557 4.6368 -1.8495 36 1 -1.5671 6.0528 -0.2426 37 1 -1.8519 8.0907 -4.5043 38 1 -2.1848 6.3597 -4.7513 39 1 -2.7221 7.1651 -3.2575 40 1 0.3959 6.4086 -5.1439 41 1 1.3290 6.1863 -3.6444 42 1 2.6706 3.4142 -5.5010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000441532939.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:03 Heat of formation + Delta-G solvation = -105.703020 kcal Electronic energy + Delta-G solvation = -27476.554172 eV Core-core repulsion = 23582.895198 eV Total energy + Delta-G solvation = -3893.658974 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.60455 -39.08205 -38.30501 -37.28330 -36.86038 -36.70421 -34.48654 -33.70854 -32.55793 -29.77474 -29.60503 -27.94101 -26.80903 -24.84454 -24.16094 -23.91694 -22.47883 -20.42390 -19.21372 -18.94270 -18.51188 -18.29801 -17.64046 -17.31951 -16.97571 -16.89999 -16.67093 -16.08901 -15.47099 -15.20969 -15.10129 -14.95271 -14.81971 -14.19863 -14.10733 -13.93353 -13.84385 -13.50710 -13.36170 -13.26962 -13.12377 -13.04164 -12.92431 -12.87203 -12.58352 -12.50254 -12.45718 -12.14543 -11.93121 -11.78865 -11.63509 -10.89534 -10.66744 -10.59628 -10.41407 -9.76366 -9.37753 -8.19423 -6.29343 -0.25363 0.17357 0.35951 1.34482 1.39045 1.46505 2.02686 2.14940 2.37975 2.63318 2.79886 3.12337 3.20615 3.46451 3.81179 4.09716 4.11308 4.18968 4.22324 4.32902 4.37155 4.40915 4.45949 4.53189 4.70843 4.73247 4.74157 4.85786 4.86557 4.98333 5.08460 5.16219 5.24605 5.29134 5.34508 5.49322 5.52132 5.73898 5.86864 6.09930 6.24765 6.28422 6.81347 6.88441 7.38644 8.87966 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.011145 B = 0.005649 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.810953 B = 4955.858569 C = 6120.528789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.321 6.321 3 C 0.296 3.704 4 C -0.206 4.206 5 C -0.036 4.036 6 C -0.212 4.212 7 C 0.161 3.839 8 C -0.088 4.088 9 C 0.127 3.873 10 N -1.109 6.109 11 S 2.801 3.199 12 O -1.008 7.008 13 O -1.008 7.008 14 N -1.005 6.005 15 C 0.097 3.903 16 C 0.255 3.745 17 C -0.533 4.533 18 H 0.070 0.930 19 C 0.026 3.974 20 N -0.916 5.916 21 Si 0.937 3.063 22 H -0.259 1.259 23 H -0.281 1.281 24 H -0.289 1.289 25 N -0.547 5.547 26 H 0.065 0.935 27 H 0.040 0.960 28 H 0.125 0.875 29 H 0.159 0.841 30 H 0.175 0.825 31 H 0.150 0.850 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.424 0.576 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.017 0.983 41 H 0.028 0.972 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.714 -4.169 10.930 12.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.229 6.229 3 C 0.117 3.883 4 C -0.226 4.226 5 C -0.061 4.061 6 C -0.232 4.232 7 C 0.024 3.976 8 C -0.128 4.128 9 C 0.000 4.000 10 N -0.870 5.870 11 S 2.808 3.192 12 O -0.993 6.993 13 O -0.992 6.992 14 N -0.847 5.847 15 C -0.048 4.048 16 C 0.132 3.868 17 C -0.572 4.572 18 H 0.088 0.912 19 C -0.175 4.175 20 N -0.556 5.556 21 Si 0.763 3.237 22 H -0.183 1.183 23 H -0.206 1.206 24 H -0.216 1.216 25 N -0.272 5.272 26 H 0.084 0.916 27 H 0.058 0.942 28 H 0.143 0.857 29 H 0.176 0.824 30 H 0.192 0.808 31 H 0.167 0.833 32 H 0.105 0.895 33 H 0.123 0.877 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.259 0.741 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.035 0.965 41 H 0.046 0.954 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.883 -3.744 11.056 12.023 hybrid contribution 0.191 -1.133 -0.470 1.241 sum -2.692 -4.877 10.586 11.962 Atomic orbital electron populations 1.23028 0.76327 1.04648 1.01899 1.86188 1.24038 1.24493 1.88172 1.20156 0.90369 0.84791 0.92963 1.21363 0.91866 1.00811 1.08543 1.21788 1.02122 0.90347 0.91807 1.22159 0.94172 1.01344 1.05521 1.20957 0.92651 0.91360 0.92618 1.21093 0.97096 0.93342 1.01223 1.21260 0.93392 0.85702 0.99692 1.55506 1.44148 1.29942 1.57404 1.01189 0.72606 0.72797 0.72630 1.93527 1.65945 1.54670 1.85128 1.93536 1.33179 1.86201 1.86257 1.57554 1.25472 1.71404 1.30229 1.21455 0.83409 1.00818 0.99160 1.18836 0.85897 0.90232 0.91876 1.21723 1.04883 0.92112 1.38460 0.91198 1.25559 0.94603 1.02059 0.95271 1.70050 1.08067 1.36038 1.41419 0.85817 0.79004 0.81266 0.77600 1.18253 1.20633 1.21591 1.66963 1.41340 0.98668 1.20217 0.91615 0.94154 0.85705 0.82360 0.80802 0.83273 0.89516 0.87717 0.89426 0.90007 0.74111 0.92537 0.90689 0.90449 0.96517 0.95353 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.89 10.49 113.37 1.19 2.08 16 2 O -0.32 -9.84 10.48 -89.91 -0.94 -10.78 16 3 C 0.30 9.77 7.48 84.79 0.63 10.40 16 4 C -0.21 -5.85 10.04 22.47 0.23 -5.63 16 5 C -0.04 -0.94 10.17 22.44 0.23 -0.71 16 6 C -0.21 -6.42 9.71 22.37 0.22 -6.20 16 7 C 0.16 5.33 6.16 42.49 0.26 5.60 16 8 C -0.09 -2.71 5.93 29.85 0.18 -2.53 16 9 C 0.13 4.33 6.01 86.38 0.52 4.85 16 10 N -1.11 -34.20 5.85 -187.48 -1.10 -35.30 16 11 S 2.80 106.25 6.04 -56.49 -0.34 105.91 16 12 O -1.01 -38.97 17.08 -128.00 -2.19 -41.16 16 13 O -1.01 -44.80 15.97 -128.00 -2.04 -46.84 16 14 N -1.01 -40.33 3.24 -543.20 -1.76 -42.09 16 15 C 0.10 3.18 10.28 127.77 1.31 4.49 16 16 C 0.26 12.46 5.07 85.63 0.43 12.89 16 17 C -0.53 -26.72 7.04 25.60 0.18 -26.54 16 18 H 0.07 3.37 7.82 -2.91 -0.02 3.35 16 19 C 0.03 1.36 5.45 84.65 0.46 1.82 16 20 N -0.92 -51.56 13.28 21.45 0.28 -51.27 16 21 Si 0.94 42.13 29.54 68.60 2.03 44.16 16 22 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 25 N -0.55 -18.67 8.76 -296.99 -2.60 -21.27 16 26 H 0.07 1.55 7.89 -2.39 -0.02 1.53 16 27 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.12 2.17 8.14 -2.39 -0.02 2.16 16 29 H 0.16 3.65 8.06 -2.91 -0.02 3.63 16 30 H 0.17 3.23 8.06 -2.91 -0.02 3.20 16 31 H 0.15 4.07 7.94 -2.91 -0.02 4.04 16 32 H 0.09 2.77 7.36 -2.38 -0.02 2.75 16 33 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.09 2.80 8.09 -2.39 -0.02 2.78 16 35 H 0.08 3.49 4.99 -2.39 -0.01 3.48 16 36 H 0.42 10.00 8.96 -96.75 -0.87 9.13 16 37 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.07 2.43 8.07 -2.39 -0.02 2.41 16 39 H 0.08 2.16 7.68 -2.38 -0.02 2.14 16 40 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.03 1.55 6.90 -2.39 -0.02 1.53 16 42 H 0.26 14.19 8.31 -92.70 -0.77 13.42 16 Total: -1.00 -68.35 366.22 -2.64 -71.00 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: 0.17 Total: 27.12 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: 5.84 Total: 0.52 kcal Atomic # 7 Polarization: -144.75 SS G_CDS: -5.17 Total: -149.93 kcal Atomic # 8 Polarization: -93.61 SS G_CDS: -5.17 Total: -98.78 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Atomic # 16 Polarization: 106.25 SS G_CDS: -0.34 Total: 105.91 kcal Total: -68.35 -2.64 -71.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000441532939.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.706 kcal (2) G-P(sol) polarization free energy of solvation -68.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds