Wall clock time and date at job start Tue Mar 31 2020 05:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86805 * 119.99990 * 2 1 4 4 H 1.48504 * 109.47064 * 270.00023 * 3 2 1 5 5 H 1.48499 * 109.47095 * 29.99908 * 3 2 1 6 6 H 1.48503 * 109.47283 * 149.99750 * 3 2 1 7 7 C 1.38721 * 120.00418 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99502 * 359.97438 * 7 2 1 9 9 O 1.34779 * 120.00449 * 180.02562 * 7 2 1 10 10 C 1.35569 * 116.99905 * 185.05772 * 9 7 2 11 11 C 1.39171 * 119.89856 * 354.35793 * 10 9 7 12 12 C 1.37605 * 120.09727 * 180.02562 * 11 10 9 13 13 C 1.40024 * 119.90024 * 359.97438 * 12 11 10 14 14 C 1.46959 * 120.10075 * 180.02562 * 13 12 11 15 15 C 1.35026 * 119.99803 * 136.68223 * 14 13 12 16 16 C 1.46250 * 119.99726 * 348.68406 * 15 14 13 17 17 O 1.21717 * 120.00763 * 353.21525 * 16 15 14 18 18 N 1.34778 * 119.99388 * 173.21158 * 16 15 14 19 19 C 1.46500 * 119.99824 * 180.27587 * 18 16 15 20 20 C 1.53001 * 109.47571 * 179.72501 * 19 18 16 21 21 N 1.46492 * 109.47457 * 180.02562 * 20 19 18 22 22 N 1.28888 * 125.45421 * 90.00137 * 21 20 19 23 23 C 1.31031 * 107.91903 * 179.97438 * 22 21 20 24 24 N 1.33315 * 106.90354 * 0.02562 * 23 22 21 25 25 N 1.28785 * 125.44948 * 269.69179 * 21 20 19 26 26 C 1.40021 * 119.79801 * 0.28073 * 13 12 11 27 27 C 1.37606 * 119.89704 * 359.41836 * 26 13 12 28 28 H 0.96996 * 119.99946 * 0.02562 * 1 2 3 29 29 H 1.07999 * 119.95251 * 359.97438 * 11 10 9 30 30 H 1.08000 * 120.05020 * 180.02562 * 12 11 10 31 31 H 1.08003 * 119.99753 * 316.68575 * 14 13 12 32 32 H 1.08000 * 119.99746 * 168.68739 * 15 14 13 33 33 H 0.96999 * 120.00474 * 0.02562 * 18 16 15 34 34 H 1.09002 * 109.47421 * 299.72337 * 19 18 16 35 35 H 1.09003 * 109.47292 * 59.72586 * 19 18 16 36 36 H 1.09002 * 109.46614 * 300.00329 * 20 19 18 37 37 H 1.09003 * 109.46744 * 59.99748 * 20 19 18 38 38 H 1.07999 * 126.55275 * 179.97438 * 23 22 21 39 39 H 1.08001 * 120.05126 * 179.72521 * 26 13 12 40 40 H 1.07996 * 119.95310 * 180.28131 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0087 -1.2013 -0.0005 8 1 1.4687 -2.1366 -0.0005 9 8 3.3565 -1.2013 0.0000 10 6 3.9720 -2.4045 -0.1071 11 6 3.2171 -3.5736 -0.0925 12 6 3.8377 -4.7970 -0.2004 13 6 5.2307 -4.8645 -0.3255 14 6 5.8979 -6.1688 -0.4415 15 6 6.8889 -6.3423 -1.3421 16 6 7.1336 -5.3261 -2.3649 17 8 6.3701 -4.3856 -2.4836 18 7 8.2048 -5.4309 -3.1762 19 6 8.4534 -4.4098 -4.1968 20 6 9.7262 -4.7606 -4.9700 21 7 9.9751 -3.7391 -5.9902 22 7 10.6723 -2.6684 -5.8215 23 6 10.6706 -2.0041 -6.9509 24 7 9.9439 -2.7119 -7.8159 25 7 9.5368 -3.7702 -7.2008 26 6 5.9865 -3.6858 -0.3342 27 6 5.3568 -2.4666 -0.2320 28 1 -0.4850 0.8400 -0.0004 29 1 2.1428 -3.5206 0.0044 30 1 3.2511 -5.7038 -0.1895 31 1 5.5956 -6.9884 0.1935 32 1 7.5006 -7.2317 -1.3071 33 1 8.8131 -6.1805 -3.0819 34 1 7.6092 -4.3710 -4.8852 35 1 8.5758 -3.4387 -3.7170 36 1 10.5704 -4.7994 -4.2816 37 1 9.6037 -5.7316 -5.4498 38 1 11.1631 -1.0625 -7.1441 39 1 7.0615 -3.7334 -0.4260 40 1 5.9384 -1.5567 -0.2433 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492170652.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:02 Heat of formation + Delta-G solvation = 132.808664 kcal Electronic energy + Delta-G solvation = -26187.300211 eV Core-core repulsion = 22200.832679 eV Total energy + Delta-G solvation = -3986.467532 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.69057 -40.01172 -38.96161 -37.06382 -36.26837 -34.41697 -33.39274 -33.18269 -32.33138 -30.40590 -30.26024 -28.25779 -25.76372 -25.10604 -24.31077 -23.06913 -22.38369 -21.98228 -21.07754 -19.58724 -18.21377 -17.90125 -17.67217 -17.25710 -16.86002 -16.22930 -15.95074 -15.47981 -14.88186 -14.74949 -14.43316 -14.13547 -13.90807 -13.83546 -13.66771 -13.42694 -13.09775 -12.98101 -12.65731 -12.52825 -12.30552 -12.14864 -12.06114 -11.53271 -11.33726 -11.32459 -11.00086 -10.81109 -10.76855 -10.71338 -10.17984 -9.70739 -9.54661 -9.34455 -9.26287 -8.79584 -8.08063 -7.04403 -6.45080 -4.08972 0.83036 1.06812 1.39502 1.89688 2.27495 2.54476 3.08622 3.21325 3.25742 3.39528 3.42429 3.64701 3.89885 4.00287 4.22019 4.37608 4.44906 4.56677 4.84632 4.88612 5.08183 5.10469 5.11040 5.29622 5.34768 5.41766 5.46398 5.61427 5.69695 5.72728 6.10102 6.13175 6.16259 6.29128 6.43691 6.60260 6.86672 7.12302 7.24153 7.32660 7.36451 7.62871 7.80907 7.99504 8.02654 8.27850 8.89928 9.53636 10.62151 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.010751 B = 0.002755 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.686136 B =10159.468132 C =12244.604741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.388 4.388 8 H 0.109 0.891 9 O -0.211 6.211 10 C 0.178 3.822 11 C -0.238 4.238 12 C -0.042 4.042 13 C -0.186 4.186 14 C 0.033 3.967 15 C -0.267 4.267 16 C 0.543 3.457 17 O -0.505 6.505 18 N -0.735 5.735 19 C 0.109 3.891 20 C 0.120 3.880 21 N -0.137 5.137 22 N -0.306 5.306 23 C 0.145 3.855 24 N -0.285 5.285 25 N -0.056 5.056 26 C 0.009 3.991 27 C -0.203 4.203 28 H 0.280 0.720 29 H 0.133 0.867 30 H 0.110 0.890 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.399 0.601 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.237 0.763 39 H 0.102 0.898 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.055 -13.228 -6.666 26.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.464 4.464 8 H 0.126 0.874 9 O -0.115 6.115 10 C 0.124 3.876 11 C -0.257 4.257 12 C -0.060 4.060 13 C -0.187 4.187 14 C 0.013 3.987 15 C -0.288 4.288 16 C 0.333 3.667 17 O -0.380 6.380 18 N -0.391 5.391 19 C -0.018 4.018 20 C -0.001 4.001 21 N -0.050 5.050 22 N -0.156 5.156 23 C -0.158 4.158 24 N -0.156 5.156 25 N -0.050 5.050 26 C -0.010 4.010 27 C -0.222 4.222 28 H 0.091 0.909 29 H 0.150 0.850 30 H 0.128 0.872 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.233 0.767 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.253 0.747 39 H 0.121 0.879 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 20.986 -12.683 -6.835 25.455 hybrid contribution 0.818 0.741 -0.005 1.103 sum 21.804 -11.942 -6.840 25.783 Atomic orbital electron populations 1.69619 1.05631 1.28633 1.47389 1.24495 0.95037 0.98899 0.95534 0.86185 0.80357 0.81334 0.79086 1.19790 1.20679 1.18295 1.20836 0.76857 0.96739 1.51945 0.87416 1.83503 1.22732 1.26264 1.79015 1.19277 0.91625 0.85274 0.91406 1.21081 1.00972 0.91787 1.11850 1.20807 0.92888 0.96735 0.95566 1.18357 0.93442 0.91974 1.14902 1.22385 0.89725 0.95077 0.91509 1.22514 1.05125 1.01190 0.99980 1.18523 0.80107 0.86266 0.81778 1.91031 1.44794 1.32475 1.69689 1.45715 1.29246 1.27578 1.36520 1.21426 0.95396 0.93629 0.91302 1.22359 1.01032 0.88366 0.88340 1.50026 1.30127 1.15238 1.09585 1.74768 1.15926 0.98112 1.26802 1.27438 1.00288 1.02766 0.85270 1.75929 1.12747 1.00411 1.26530 1.79053 1.16918 1.17076 0.91907 1.20436 0.97486 0.90833 0.92213 1.20008 0.91783 0.97734 1.12678 0.90934 0.84966 0.87235 0.85694 0.85787 0.76679 0.90105 0.90056 0.85920 0.85783 0.74675 0.87946 0.86837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.47 13.96 55.48 0.77 -24.70 16 2 C 0.06 1.82 5.49 -17.51 -0.10 1.73 16 3 Si 0.91 22.00 28.62 -169.99 -4.86 17.13 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.39 -11.13 9.94 30.91 0.31 -10.82 16 8 H 0.11 3.14 5.41 -52.49 -0.28 2.86 16 9 O -0.21 -5.73 8.57 0.75 0.01 -5.73 16 10 C 0.18 4.28 6.66 -38.89 -0.26 4.02 16 11 C -0.24 -5.30 9.14 -39.47 -0.36 -5.66 16 12 C -0.04 -0.77 9.78 -39.14 -0.38 -1.16 16 13 C -0.19 -3.18 4.54 -105.03 -0.48 -3.65 16 14 C 0.03 0.40 9.80 -37.19 -0.36 0.04 16 15 C -0.27 -2.78 9.90 -37.51 -0.37 -3.15 16 16 C 0.54 6.75 6.77 -13.04 -0.09 6.67 16 17 O -0.50 -8.96 12.18 5.17 0.06 -8.89 16 18 N -0.74 -5.76 5.55 -61.75 -0.34 -6.10 16 19 C 0.11 0.91 6.00 -4.04 -0.02 0.89 16 20 C 0.12 0.62 6.72 -4.05 -0.03 0.60 16 21 N -0.14 -1.24 4.00 -10.68 -0.04 -1.28 16 22 N -0.31 -2.93 12.13 29.34 0.36 -2.58 16 23 C 0.15 1.27 13.26 -91.59 -1.21 0.05 16 24 N -0.29 -3.22 12.50 29.33 0.37 -2.85 16 25 N -0.06 -0.62 13.25 60.35 0.80 0.18 16 26 C 0.01 0.16 6.59 -39.14 -0.26 -0.10 16 27 C -0.20 -4.31 9.97 -39.46 -0.39 -4.70 16 28 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.13 3.07 5.62 -52.49 -0.29 2.77 16 30 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.13 1.16 8.06 -52.48 -0.42 0.73 16 32 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.40 1.50 8.45 -40.82 -0.34 1.16 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.12 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.24 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.10 1.67 7.02 -52.49 -0.37 1.31 16 40 H 0.11 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 354.33 15.07 5.34 5.34 Total: -1.00 -36.35 354.33 -5.79 -42.13 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -4.23 Total: 2.61 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -4.01 Total: -15.27 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 1.91 Total: -37.34 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: 0.07 Total: -14.62 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.86 Total: 17.13 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.35 -5.79 -42.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492170652.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.942 kcal (2) G-P(sol) polarization free energy of solvation -36.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds