Wall clock time and date at job start Tue Mar 31 2020 06:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28783 * 125.44777 * 2 1 4 4 N 1.28998 * 108.72610 * 179.72665 * 3 2 1 5 5 C 1.33321 * 107.35500 * 0.42357 * 4 3 2 6 6 C 1.50693 * 126.55373 * 179.83802 * 5 4 3 7 7 N 1.46496 * 109.47180 * 269.69360 * 6 5 4 8 8 C 1.34779 * 120.00079 * 179.97438 * 7 6 5 9 9 O 1.21718 * 120.00206 * 359.97438 * 8 7 6 10 10 C 1.46258 * 119.99808 * 179.97438 * 8 7 6 11 11 C 1.35023 * 119.99820 * 173.07123 * 10 8 7 12 12 C 1.46962 * 120.00043 * 348.86916 * 11 10 8 13 13 C 1.40027 * 120.09883 * 311.82207 * 12 11 10 14 14 C 1.37599 * 119.89700 * 179.69369 * 13 12 11 15 15 C 1.39188 * 120.10058 * 0.60386 * 14 13 12 16 16 O 1.35564 * 119.89812 * 179.69592 * 15 14 13 17 17 C 1.34781 * 116.99803 * 185.61206 * 16 15 14 18 18 H 1.08005 * 120.00163 * 354.90738 * 17 16 15 19 19 C 1.38717 * 119.99905 * 174.90389 * 17 16 15 20 20 N 1.31509 * 120.00013 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99991 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46991 * 90.00269 * 21 19 17 23 23 H 1.48493 * 109.47446 * 210.00185 * 21 19 17 24 24 H 1.48502 * 109.47370 * 330.00457 * 21 19 17 25 25 C 1.39176 * 120.19989 * 359.66998 * 15 14 13 26 26 C 1.37600 * 120.10365 * 0.02562 * 25 15 14 27 27 N 1.28883 * 125.45133 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47212 * 270.00495 * 1 2 3 29 29 H 1.09001 * 109.47021 * 30.00478 * 1 2 3 30 30 H 1.09003 * 109.47211 * 150.00290 * 1 2 3 31 31 H 1.08999 * 109.47585 * 149.69169 * 6 5 4 32 32 H 1.09001 * 109.47237 * 29.69049 * 6 5 4 33 33 H 0.97002 * 120.00018 * 359.97438 * 7 6 5 34 34 H 1.07998 * 119.99941 * 353.06892 * 10 8 7 35 35 H 1.07995 * 119.99965 * 168.59678 * 11 10 8 36 36 H 1.08003 * 120.05478 * 359.97438 * 13 12 11 37 37 H 1.07998 * 119.95050 * 180.27297 * 14 13 12 38 38 H 0.97008 * 119.99693 * 179.97438 * 20 19 17 39 39 H 1.07993 * 119.94975 * 180.02562 * 25 15 14 40 40 H 1.07995 * 120.05055 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2118 1.0491 0.0000 4 7 3.4473 0.6780 0.0058 5 6 3.4620 -0.6551 0.0002 6 6 4.6824 -1.5392 0.0003 7 7 5.0780 -1.8257 -1.3809 8 6 6.1514 -2.6027 -1.6271 9 8 6.7925 -3.0659 -0.7019 10 6 6.5459 -2.8892 -3.0060 11 6 7.6975 -3.5485 -3.2556 12 6 8.6704 -3.7630 -2.1752 13 6 9.0509 -2.6968 -1.3510 14 6 9.9574 -2.9037 -0.3367 15 6 10.5055 -4.1675 -0.1373 16 8 11.4030 -4.3652 0.8593 17 6 11.9836 -5.5796 0.9278 18 1 11.6675 -6.3678 0.2603 19 6 12.9872 -5.8173 1.8554 20 7 13.3718 -4.8578 2.6684 21 14 13.7924 -7.5002 1.9498 22 1 14.9659 -7.5392 1.0405 23 1 14.2370 -7.7589 3.3428 24 1 12.8147 -8.5405 1.5410 25 6 10.1346 -5.2288 -0.9577 26 6 9.2241 -5.0327 -1.9705 27 7 2.2125 -1.0499 0.0005 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5138 31 1 4.4546 -2.4730 0.5141 32 1 5.4988 -1.0315 0.5141 33 1 4.5673 -1.4563 -2.1182 34 1 5.9162 -2.5734 -3.8245 35 1 7.9016 -3.9221 -4.2480 36 1 8.6301 -1.7147 -1.5082 37 1 10.2482 -2.0830 0.3023 38 1 14.0734 -5.0241 3.3174 39 1 10.5621 -6.2078 -0.7991 40 1 8.9366 -5.8570 -2.6063 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493836641.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:53 Heat of formation + Delta-G solvation = 129.446921 kcal Electronic energy + Delta-G solvation = -26031.136076 eV Core-core repulsion = 22044.522768 eV Total energy + Delta-G solvation = -3986.613308 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.75003 -39.72507 -38.69380 -36.64125 -35.86021 -34.75497 -33.23180 -33.03576 -32.09398 -30.08565 -29.74285 -28.28336 -27.09180 -25.36873 -23.63559 -23.28330 -22.28561 -21.73468 -20.93460 -19.46297 -18.01807 -17.88966 -17.84953 -17.22309 -16.62158 -16.04290 -15.21924 -14.96394 -14.52813 -14.35719 -14.33864 -14.20584 -13.97806 -13.69180 -13.52714 -13.31782 -13.19584 -13.02171 -12.81271 -12.53228 -12.20889 -12.15014 -11.67668 -11.38641 -11.33876 -11.31078 -10.99422 -10.70588 -10.65907 -10.58531 -10.39768 -9.52939 -9.36506 -9.17214 -9.06055 -8.68335 -7.93768 -6.85226 -6.42262 -3.98098 0.78719 1.28424 1.49545 1.63874 2.45346 2.67820 3.16113 3.16971 3.21320 3.23105 3.54854 3.60719 3.83169 4.00094 4.30650 4.38803 4.61420 4.71496 4.92679 5.13658 5.17702 5.22328 5.30889 5.37463 5.42387 5.50941 5.62979 5.69471 5.77048 5.88270 6.27250 6.31569 6.34788 6.45885 6.60984 6.81982 7.06680 7.15439 7.38832 7.46779 7.53962 7.57044 7.94385 7.95615 8.04391 8.47361 9.03447 9.76021 10.75651 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.019972 B = 0.002152 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.596066 B =13010.546986 C =13787.878066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.141 5.141 3 N -0.062 5.062 4 N -0.267 5.267 5 C 0.156 3.844 6 C 0.223 3.777 7 N -0.733 5.733 8 C 0.544 3.456 9 O -0.506 6.506 10 C -0.261 4.261 11 C 0.029 3.971 12 C -0.183 4.183 13 C -0.001 4.001 14 C -0.197 4.197 15 C 0.169 3.831 16 O -0.173 6.173 17 C -0.389 4.389 18 H 0.093 0.907 19 C 0.038 3.962 20 N -0.860 5.860 21 Si 0.942 3.058 22 H -0.273 1.273 23 H -0.278 1.278 24 H -0.267 1.267 25 C -0.247 4.247 26 C -0.044 4.044 27 N -0.292 5.292 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.397 0.603 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.102 0.898 37 H 0.114 0.886 38 H 0.270 0.730 39 H 0.126 0.874 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.693 7.234 -10.172 27.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.054 5.054 3 N -0.056 5.056 4 N -0.139 5.139 5 C -0.127 4.127 6 C 0.096 3.904 7 N -0.388 5.388 8 C 0.334 3.666 9 O -0.381 6.381 10 C -0.282 4.282 11 C 0.009 3.991 12 C -0.184 4.184 13 C -0.019 4.019 14 C -0.217 4.217 15 C 0.114 3.886 16 O -0.076 6.076 17 C -0.466 4.466 18 H 0.111 0.889 19 C -0.166 4.166 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.266 4.266 26 C -0.062 4.062 27 N -0.144 5.144 28 H 0.121 0.879 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.230 0.770 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.120 0.880 37 H 0.132 0.868 38 H 0.080 0.920 39 H 0.143 0.857 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -24.363 7.622 -9.059 27.087 hybrid contribution -0.027 -1.031 -0.289 1.071 sum -24.390 6.591 -9.348 26.938 Atomic orbital electron populations 1.22475 0.68938 1.06966 1.06225 1.50121 1.10863 1.00932 1.43437 1.79031 0.96503 1.14249 1.15806 1.75933 1.09774 1.11056 1.17112 1.25633 0.93130 0.90737 1.03205 1.19306 0.88786 0.96572 0.85719 1.45869 1.32284 1.53769 1.06899 1.18459 0.79447 0.78089 0.90566 1.91025 1.51441 1.49749 1.45852 1.22565 1.00540 1.10421 0.94688 1.22351 0.90590 0.88579 0.97545 1.18287 1.03872 0.94882 1.01376 1.20447 0.92870 0.96670 0.91956 1.20017 1.04111 0.95280 1.02274 1.19533 0.89017 0.93029 0.86991 1.83908 1.47440 1.34815 1.41424 1.21383 1.17681 0.86956 1.20548 0.88921 1.25321 0.96206 0.99676 0.95418 1.70028 1.27999 1.32312 1.19128 0.85701 0.79401 0.80250 0.78016 1.19865 1.20279 1.19161 1.20958 1.05054 0.99810 1.00776 1.20712 0.94190 0.95000 0.96294 1.74761 1.03311 1.15266 1.21082 0.87873 0.86826 0.86988 0.88451 0.87922 0.76981 0.86100 0.85948 0.87961 0.86755 0.91994 0.85666 0.87639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.19 11.63 59.84 0.70 0.89 16 2 N -0.14 -1.15 4.40 -16.69 -0.07 -1.22 16 3 N -0.06 -0.66 13.25 60.35 0.80 0.14 16 4 N -0.27 -3.29 12.50 32.45 0.41 -2.88 16 5 C 0.16 1.74 7.74 -156.62 -1.21 0.53 16 6 C 0.22 2.56 6.30 -5.20 -0.03 2.53 16 7 N -0.73 -8.31 5.54 -62.94 -0.35 -8.66 16 8 C 0.54 7.86 6.94 -13.04 -0.09 7.77 16 9 O -0.51 -9.59 12.49 5.17 0.06 -9.52 16 10 C -0.26 -3.22 9.92 -37.50 -0.37 -3.59 16 11 C 0.03 0.40 9.77 -37.19 -0.36 0.03 16 12 C -0.18 -3.35 4.34 -105.02 -0.46 -3.81 16 13 C 0.00 -0.02 6.77 -39.14 -0.27 -0.28 16 14 C -0.20 -4.54 9.97 -39.46 -0.39 -4.93 16 15 C 0.17 4.31 6.66 -38.88 -0.26 4.05 16 16 O -0.17 -5.13 9.74 0.76 0.01 -5.12 16 17 C -0.39 -11.15 9.48 30.91 0.29 -10.86 16 18 H 0.09 2.46 5.18 -52.48 -0.27 2.18 16 19 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 20 N -0.86 -25.65 13.67 55.48 0.76 -24.89 16 21 Si 0.94 20.86 29.55 -169.99 -5.02 15.83 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 23 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 25 C -0.25 -5.65 9.14 -39.47 -0.36 -6.01 16 26 C -0.04 -0.85 9.78 -39.14 -0.38 -1.23 16 27 N -0.29 -2.96 12.13 32.46 0.39 -2.57 16 28 H 0.10 0.05 8.14 -51.93 -0.42 -0.38 16 29 H 0.11 0.00 8.14 -51.93 -0.42 -0.42 16 30 H 0.11 0.05 8.14 -51.93 -0.42 -0.37 16 31 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.40 3.61 8.44 -40.82 -0.34 3.27 16 34 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.10 1.83 7.46 -52.48 -0.39 1.44 16 37 H 0.11 2.56 8.06 -52.49 -0.42 2.14 16 38 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.13 2.84 5.62 -52.49 -0.29 2.54 16 40 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 356.51 15.07 5.37 5.37 Total: -1.00 -36.87 356.51 -5.18 -42.05 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -4.24 Total: 5.39 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -3.29 Total: -13.92 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: 1.94 Total: -40.09 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: 0.07 Total: -14.64 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.87 -5.18 -42.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493836641.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.498 kcal (2) G-P(sol) polarization free energy of solvation -36.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds