Wall clock time and date at job start Tue Mar 31 2020 06:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28783 * 125.44370 * 2 1 4 4 N 1.28997 * 108.72438 * 179.72488 * 3 2 1 5 5 C 1.33325 * 107.35357 * 0.43486 * 4 3 2 6 6 C 1.50694 * 126.54950 * 179.83087 * 5 4 3 7 7 N 1.46495 * 109.47347 * 269.68571 * 6 5 4 8 8 C 1.34775 * 120.00069 * 179.97438 * 7 6 5 9 9 O 1.21729 * 120.00158 * 359.73361 * 8 7 6 10 10 C 1.46259 * 120.00229 * 179.72776 * 8 7 6 11 11 C 1.35025 * 120.00090 * 180.02562 * 10 8 7 12 12 C 1.46953 * 119.99703 * 180.02562 * 11 10 8 13 13 C 1.40029 * 120.10459 * 359.71724 * 12 11 10 14 14 C 1.37600 * 119.89858 * 179.70119 * 13 12 11 15 15 C 1.39183 * 120.09991 * 0.59823 * 14 13 12 16 16 O 1.35568 * 119.89987 * 179.69743 * 15 14 13 17 17 C 1.34775 * 117.00363 * 174.42599 * 16 15 14 18 18 H 1.08004 * 119.99823 * 5.05268 * 17 16 15 19 19 C 1.38713 * 120.00312 * 185.05637 * 17 16 15 20 20 N 1.31508 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00060 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46883 * 60.00431 * 21 19 17 23 23 H 1.48504 * 109.47115 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47739 * 300.00504 * 21 19 17 25 25 C 1.39177 * 120.20153 * 359.68202 * 15 14 13 26 26 C 1.37596 * 120.10378 * 0.02562 * 25 15 14 27 27 N 1.28878 * 125.45134 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47076 * 269.99691 * 1 2 3 29 29 H 1.08995 * 109.47201 * 30.00175 * 1 2 3 30 30 H 1.08997 * 109.46888 * 150.00075 * 1 2 3 31 31 H 1.09002 * 109.47138 * 149.68723 * 6 5 4 32 32 H 1.08994 * 109.47515 * 29.69156 * 6 5 4 33 33 H 0.97002 * 120.00339 * 359.73199 * 7 6 5 34 34 H 1.07994 * 119.99780 * 359.97438 * 10 8 7 35 35 H 1.08002 * 119.99866 * 359.97438 * 11 10 8 36 36 H 1.08001 * 120.04743 * 0.02562 * 13 12 11 37 37 H 1.07995 * 119.95151 * 180.27823 * 14 13 12 38 38 H 0.96998 * 120.00352 * 179.97438 * 20 19 17 39 39 H 1.08005 * 119.95063 * 179.97438 * 25 15 14 40 40 H 1.08001 * 120.05114 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2119 1.0492 0.0000 4 7 3.4473 0.6781 0.0059 5 6 3.4621 -0.6551 0.0000 6 6 4.6826 -1.5390 -0.0001 7 7 5.0780 -1.8254 -1.3813 8 6 6.1514 -2.6023 -1.6276 9 8 6.7953 -3.0619 -0.7025 10 6 6.5427 -2.8932 -3.0066 11 6 7.6179 -3.6718 -3.2533 12 6 8.0113 -3.9636 -4.6388 13 6 7.2693 -3.4401 -5.7047 14 6 7.6451 -3.7109 -7.0004 15 6 8.7535 -4.5141 -7.2523 16 8 9.1165 -4.7833 -8.5305 17 6 10.2626 -5.4694 -8.7095 18 1 10.8037 -5.8492 -7.8554 19 6 10.7474 -5.6878 -9.9907 20 7 10.0884 -5.2258 -11.0307 21 14 12.3363 -6.6381 -10.2387 22 1 12.1899 -8.0034 -9.6731 23 1 12.6345 -6.7337 -11.6904 24 1 13.4473 -5.9336 -9.5500 25 6 9.4906 -5.0414 -6.1961 26 6 9.1258 -4.7710 -4.8972 27 7 2.2125 -1.0498 -0.0005 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 4.4548 -2.4729 0.5137 32 1 5.4989 -1.0315 0.5137 33 1 4.5652 -1.4589 -2.1186 34 1 5.9712 -2.4858 -3.8274 35 1 8.1892 -4.0795 -2.4324 36 1 6.4064 -2.8203 -5.5101 37 1 7.0760 -3.3039 -7.8231 38 1 10.4276 -5.3781 -11.9266 39 1 10.3497 -5.6645 -6.3962 40 1 9.6986 -5.1804 -4.0782 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493836642.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:57 Heat of formation + Delta-G solvation = 112.708706 kcal Electronic energy + Delta-G solvation = -24975.584652 eV Core-core repulsion = 20988.245521 eV Total energy + Delta-G solvation = -3987.339131 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.83036 -39.64639 -39.12530 -36.92956 -36.07679 -34.91196 -33.35073 -33.19060 -32.29876 -30.43378 -29.83973 -28.47818 -27.19157 -25.64586 -23.71225 -23.37832 -22.49260 -22.10471 -20.82511 -19.49227 -18.31627 -17.99113 -17.92361 -17.13425 -17.11774 -16.14536 -15.39162 -15.11360 -14.79145 -14.53162 -14.44626 -14.34513 -14.15225 -13.89372 -13.81648 -13.41377 -13.34965 -13.12762 -13.02770 -12.59328 -12.32253 -11.93460 -11.76550 -11.72656 -11.46375 -11.42024 -11.10697 -11.08403 -10.83312 -10.69842 -10.54457 -9.84437 -9.61593 -9.50211 -9.28278 -8.85465 -8.38180 -7.11839 -6.65172 -4.20109 0.71549 1.05584 1.42677 1.54686 2.13786 2.54320 3.04243 3.05846 3.08291 3.12455 3.44179 3.54091 3.74877 3.82403 4.26529 4.31997 4.51024 4.58302 4.81049 4.92281 5.04399 5.05831 5.19869 5.27134 5.29814 5.35089 5.53418 5.61002 5.62828 5.66981 6.01066 6.11321 6.15380 6.45083 6.47182 6.60600 6.79100 6.91316 7.12797 7.23440 7.27399 7.42747 7.63919 7.79977 7.86362 8.24697 8.79425 9.46291 10.51309 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.029473 B = 0.001622 C = 0.001559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.794647 B =17257.032709 C =17958.937505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.140 5.140 3 N -0.061 5.061 4 N -0.267 5.267 5 C 0.152 3.848 6 C 0.224 3.776 7 N -0.730 5.730 8 C 0.563 3.437 9 O -0.555 6.555 10 C -0.283 4.283 11 C 0.042 3.958 12 C -0.200 4.200 13 C -0.042 4.042 14 C -0.200 4.200 15 C 0.167 3.833 16 O -0.162 6.162 17 C -0.394 4.394 18 H 0.097 0.903 19 C 0.042 3.958 20 N -0.852 5.852 21 Si 0.945 3.055 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.267 1.267 25 C -0.243 4.243 26 C -0.034 4.034 27 N -0.291 5.291 28 H 0.103 0.897 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.402 0.598 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.275 0.725 39 H 0.131 0.869 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.718 7.701 18.539 26.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.052 5.052 3 N -0.054 5.054 4 N -0.139 5.139 5 C -0.131 4.131 6 C 0.097 3.903 7 N -0.383 5.383 8 C 0.355 3.645 9 O -0.435 6.435 10 C -0.304 4.304 11 C 0.023 3.977 12 C -0.201 4.201 13 C -0.061 4.061 14 C -0.219 4.219 15 C 0.110 3.890 16 O -0.063 6.063 17 C -0.469 4.469 18 H 0.114 0.886 19 C -0.164 4.164 20 N -0.485 5.485 21 Si 0.769 3.231 22 H -0.193 1.193 23 H -0.201 1.201 24 H -0.192 1.192 25 C -0.262 4.262 26 C -0.052 4.052 27 N -0.143 5.143 28 H 0.122 0.878 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.236 0.764 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.085 0.915 39 H 0.149 0.851 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -16.753 7.987 18.690 26.339 hybrid contribution 0.502 -0.629 -0.497 0.946 sum -16.250 7.358 18.193 25.480 Atomic orbital electron populations 1.22501 0.68795 1.07142 1.06227 1.50132 1.10928 1.00871 1.43252 1.79041 0.96444 1.14215 1.15712 1.75926 1.09887 1.10975 1.17133 1.25583 0.93133 0.90779 1.03581 1.19290 0.88838 0.96522 0.85631 1.45742 1.31728 1.53706 1.07169 1.18366 0.78913 0.77062 0.90142 1.90796 1.53503 1.52636 1.46523 1.22350 1.03924 1.10076 0.94093 1.22292 0.91661 0.88578 0.95210 1.18457 1.01275 1.08714 0.91658 1.20886 0.97266 0.96547 0.91359 1.20151 0.99942 1.05097 0.96724 1.19618 0.92707 0.91372 0.85254 1.83899 1.38667 1.63007 1.20699 1.21434 0.98648 1.32625 0.94212 0.88562 1.25393 0.99548 0.97368 0.94120 1.70002 1.38195 1.41357 0.98897 0.85712 0.79790 0.79531 0.78091 1.19252 1.20088 1.19225 1.21100 1.04673 1.08214 0.92184 1.20994 0.94085 0.94160 0.95979 1.74755 1.03248 1.15332 1.20925 0.87844 0.86731 0.86885 0.88473 0.88058 0.76380 0.85863 0.85786 0.86425 0.86153 0.91539 0.85110 0.86748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.14 11.63 59.85 0.70 0.84 16 2 N -0.14 -1.04 4.40 -16.69 -0.07 -1.11 16 3 N -0.06 -0.60 13.25 60.35 0.80 0.20 16 4 N -0.27 -3.03 12.50 32.45 0.41 -2.62 16 5 C 0.15 1.53 7.74 -156.62 -1.21 0.32 16 6 C 0.22 2.19 6.30 -5.20 -0.03 2.16 16 7 N -0.73 -7.78 5.54 -62.94 -0.35 -8.13 16 8 C 0.56 7.67 7.74 -13.04 -0.10 7.57 16 9 O -0.55 -9.26 16.23 5.16 0.08 -9.18 16 10 C -0.28 -3.80 9.41 -37.50 -0.35 -4.16 16 11 C 0.04 0.63 9.45 -37.20 -0.35 0.28 16 12 C -0.20 -3.38 5.87 -105.03 -0.62 -3.99 16 13 C -0.04 -0.72 9.40 -39.14 -0.37 -1.09 16 14 C -0.20 -3.99 9.97 -39.46 -0.39 -4.38 16 15 C 0.17 3.83 6.66 -38.88 -0.26 3.57 16 16 O -0.16 -4.39 9.74 0.76 0.01 -4.38 16 17 C -0.39 -10.44 9.48 30.91 0.29 -10.14 16 18 H 0.10 2.33 5.18 -52.48 -0.27 2.06 16 19 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 20 N -0.85 -23.79 13.67 55.48 0.76 -23.03 16 21 Si 0.94 19.46 29.55 -169.99 -5.02 14.44 16 22 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 23 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 24 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 25 C -0.24 -4.99 9.14 -39.47 -0.36 -5.35 16 26 C -0.03 -0.60 9.78 -39.14 -0.38 -0.98 16 27 N -0.29 -2.68 12.13 32.47 0.39 -2.29 16 28 H 0.10 -0.03 8.14 -51.93 -0.42 -0.45 16 29 H 0.11 -0.04 8.14 -51.93 -0.42 -0.46 16 30 H 0.11 0.02 8.14 -51.93 -0.42 -0.41 16 31 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.40 3.65 8.44 -40.82 -0.34 3.30 16 34 H 0.12 1.44 6.06 -52.49 -0.32 1.12 16 35 H 0.12 1.82 7.52 -52.49 -0.39 1.42 16 36 H 0.12 1.63 6.16 -52.49 -0.32 1.31 16 37 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 38 H 0.27 7.02 8.31 -40.82 -0.34 6.69 16 39 H 0.13 2.66 5.62 -52.48 -0.29 2.36 16 40 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 360.53 15.07 5.43 5.43 Total: -1.00 -33.77 360.53 -5.14 -38.92 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -4.04 Total: 6.10 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -3.54 Total: -14.36 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 1.94 Total: -36.97 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.09 Total: -13.56 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.77 -5.14 -38.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493836642.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.625 kcal (2) G-P(sol) polarization free energy of solvation -33.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds