Wall clock time and date at job start Tue Mar 31 2020 05:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39721 * 125.77843 * 2 1 4 4 C 1.36161 * 107.86203 * 180.16677 * 3 2 1 5 5 N 1.39350 * 126.27088 * 179.84739 * 4 3 2 6 6 C 1.34777 * 119.99568 * 359.68792 * 5 4 3 7 7 O 1.21549 * 120.00429 * 0.02562 * 6 5 4 8 8 C 1.47957 * 119.99729 * 179.97438 * 6 5 4 9 9 C 1.39892 * 120.46173 * 179.97438 * 8 6 5 10 10 C 1.38435 * 118.35487 * 180.02562 * 9 8 6 11 11 C 1.39309 * 119.19500 * 0.02562 * 10 9 8 12 12 C 1.48327 * 119.57351 * 180.02562 * 11 10 9 13 13 N 1.34775 * 120.00357 * 179.97438 * 12 11 10 14 14 O 1.21494 * 119.99549 * 359.97438 * 12 11 10 15 15 N 1.32724 * 120.85910 * 359.97438 * 11 10 9 16 16 C 1.31401 * 121.80221 * 0.02562 * 15 11 10 17 17 N 1.35816 * 107.46408 * 359.58704 * 4 3 2 18 18 C 1.46502 * 126.09428 * 180.24257 * 17 4 3 19 19 C 1.50707 * 109.47239 * 89.99420 * 18 17 4 20 20 H 1.07996 * 119.99575 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99897 * 180.02562 * 19 18 17 22 22 N 1.31509 * 120.00220 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99449 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47288 * 90.00596 * 23 21 19 25 25 H 1.48504 * 109.46820 * 209.99859 * 23 21 19 26 26 H 1.48496 * 109.47379 * 329.99973 * 23 21 19 27 27 N 1.30832 * 125.77513 * 179.70268 * 2 1 3 28 28 H 1.09002 * 109.47232 * 270.27691 * 1 2 3 29 29 H 1.09002 * 109.46789 * 30.27179 * 1 2 3 30 30 H 1.08995 * 109.47590 * 150.27230 * 1 2 3 31 31 H 1.08000 * 126.07559 * 0.04776 * 3 2 1 32 32 H 0.96994 * 120.00537 * 179.69301 * 5 4 3 33 33 H 1.08005 * 120.82599 * 0.02562 * 9 8 6 34 34 H 1.08003 * 120.40486 * 180.02562 * 10 9 8 35 35 H 0.97003 * 119.99456 * 359.97438 * 13 12 11 36 36 H 0.96995 * 120.00039 * 180.02562 * 13 12 11 37 37 H 1.08003 * 119.64439 * 179.97438 * 16 15 11 38 38 H 1.08993 * 109.47552 * 209.99735 * 18 17 4 39 39 H 1.09002 * 109.47054 * 329.99908 * 18 17 4 40 40 H 0.96998 * 120.00106 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1335 0.0000 4 6 3.6195 0.7147 -0.0038 5 7 4.7495 1.5301 -0.0080 6 6 4.6129 2.8709 -0.0151 7 8 3.5041 3.3689 -0.0172 8 6 5.8127 3.7367 -0.0190 9 6 5.6822 5.1295 -0.0269 10 6 6.8338 5.8977 -0.0309 11 6 8.0740 5.2632 -0.0275 12 6 9.3133 6.0781 -0.0312 13 7 10.5177 5.4733 -0.0275 14 8 9.2426 7.2910 -0.0376 15 7 8.1611 3.9388 -0.0201 16 6 7.0922 3.1746 -0.0161 17 7 3.6088 -0.6434 0.0033 18 6 4.7858 -1.5158 0.0074 19 6 5.1899 -1.8074 1.4297 20 1 4.6262 -1.3855 2.2485 21 6 6.2794 -2.6129 1.6854 22 7 6.9662 -3.1262 0.6882 23 14 6.7799 -2.9749 3.4483 24 1 6.0795 -4.1961 3.9209 25 1 8.2478 -3.1904 3.5118 26 1 6.4104 -1.8261 4.3136 27 7 2.2719 -1.0614 0.0055 28 1 -0.3634 0.0050 1.0277 29 1 -0.3633 0.8876 -0.5181 30 1 -0.3634 -0.8923 -0.5096 31 1 1.9875 2.1598 0.0007 32 1 5.6343 1.1328 -0.0060 33 1 4.7071 5.5940 -0.0298 34 1 6.7715 6.9759 -0.0365 35 1 10.5740 4.5049 -0.0220 36 1 11.3280 6.0063 -0.0295 37 1 7.2035 2.1003 -0.0105 38 1 4.5476 -2.4498 -0.5014 39 1 5.6074 -1.0198 -0.5093 40 1 7.7324 -3.6931 0.8681 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000521010936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:59 Heat of formation + Delta-G solvation = 42.511213 kcal Electronic energy + Delta-G solvation = -26730.584401 eV Core-core repulsion = 22740.201278 eV Total energy + Delta-G solvation = -3990.383123 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.34551 -40.70075 -39.51902 -38.59836 -35.01603 -34.23125 -33.88128 -32.78895 -32.27358 -31.86069 -29.22794 -28.38445 -26.14213 -25.84919 -24.03960 -23.04718 -22.30441 -21.14421 -19.98350 -19.64750 -18.62973 -17.66130 -17.44522 -16.86443 -16.56978 -16.20631 -15.63189 -15.54243 -15.22169 -15.13470 -14.79832 -14.40070 -14.19842 -14.05176 -13.60654 -13.52873 -13.08676 -12.90056 -12.82615 -12.57185 -12.13029 -11.86327 -11.64661 -11.14942 -10.94921 -10.84353 -10.56647 -10.44871 -10.37063 -10.34255 -10.07377 -9.94087 -9.87658 -9.66327 -9.63724 -8.77873 -8.00405 -7.56450 -6.39377 -4.48346 -0.13644 0.77638 1.96293 2.48025 2.57346 2.95341 3.03905 3.13057 3.20419 3.24089 3.42955 3.61262 3.64006 3.72832 4.19151 4.29391 4.38010 4.50021 4.55189 4.75773 4.94019 5.22896 5.28098 5.48195 5.54989 5.62314 5.98702 5.99219 6.05529 6.08492 6.16856 6.29266 6.35865 6.55210 6.74633 6.87224 6.96462 7.25872 7.36562 7.45869 7.53923 7.71968 7.75298 7.82994 8.08503 8.52989 8.63027 9.19871 10.67621 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.009307 B = 0.003724 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3007.611060 B = 7516.884150 C =10057.304199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.050 3.950 3 C -0.289 4.289 4 C 0.297 3.703 5 N -0.630 5.630 6 C 0.567 3.433 7 O -0.503 6.503 8 C -0.154 4.154 9 C -0.018 4.018 10 C -0.117 4.117 11 C 0.092 3.908 12 C 0.579 3.421 13 N -0.833 5.833 14 O -0.534 6.534 15 N -0.458 5.458 16 C 0.138 3.862 17 N -0.344 5.344 18 C 0.256 3.744 19 C -0.543 4.543 20 H 0.065 0.935 21 C 0.069 3.931 22 N -0.889 5.889 23 Si 0.905 3.095 24 H -0.276 1.276 25 H -0.282 1.282 26 H -0.272 1.272 27 N -0.280 5.280 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.162 0.838 32 H 0.416 0.584 33 H 0.160 0.840 34 H 0.158 0.842 35 H 0.415 0.585 36 H 0.406 0.594 37 H 0.172 0.828 38 H 0.058 0.942 39 H 0.044 0.956 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.530 14.675 -2.869 15.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.114 4.114 3 C -0.321 4.321 4 C 0.075 3.925 5 N -0.276 5.276 6 C 0.353 3.647 7 O -0.377 6.377 8 C -0.160 4.160 9 C -0.044 4.044 10 C -0.138 4.138 11 C -0.046 4.046 12 C 0.361 3.639 13 N -0.396 5.396 14 O -0.410 6.410 15 N -0.169 5.169 16 C -0.023 4.023 17 N -0.130 5.130 18 C 0.139 3.861 19 C -0.581 4.581 20 H 0.083 0.917 21 C -0.135 4.135 22 N -0.526 5.526 23 Si 0.732 3.268 24 H -0.202 1.202 25 H -0.208 1.208 26 H -0.197 1.197 27 N -0.105 5.105 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.180 0.820 32 H 0.254 0.746 33 H 0.178 0.822 34 H 0.175 0.825 35 H 0.245 0.755 36 H 0.237 0.763 37 H 0.189 0.811 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.733 13.971 -2.923 14.533 hybrid contribution 0.631 0.186 0.994 1.192 sum 3.364 14.157 -1.930 14.678 Atomic orbital electron populations 1.20032 0.87486 1.02410 1.02230 1.22026 0.96593 0.90937 1.01893 1.21277 0.89000 1.00525 1.21257 1.17945 0.87659 0.83363 1.03530 1.42540 1.08630 1.05252 1.71228 1.17817 0.88648 0.80983 0.77245 1.90733 1.25591 1.73773 1.47640 1.21055 0.94472 0.95210 1.05222 1.21796 1.00207 0.91627 0.90784 1.22130 0.91098 1.02676 0.97878 1.21308 0.94002 0.90334 0.98941 1.17858 0.83470 0.86621 0.75910 1.43651 1.07388 1.12729 1.75821 1.90840 1.86995 1.13204 1.49985 1.67548 1.33428 1.04762 1.11146 1.23098 0.86420 1.00562 0.92209 1.49539 1.06550 1.01953 1.54942 1.19646 0.77752 0.89772 0.98971 1.21341 1.13394 1.32120 0.91283 0.91661 1.24922 0.95643 0.94795 0.98180 1.69907 1.19184 1.32361 1.31148 0.86367 0.77683 0.79140 0.83613 1.20171 1.20791 1.19682 1.77358 0.86107 1.21792 1.25249 0.91251 0.91092 0.91488 0.82038 0.74626 0.82239 0.82461 0.75474 0.76256 0.81084 0.92418 0.93841 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.89 10.44 36.01 0.38 -0.51 16 2 C 0.05 0.97 7.20 -82.46 -0.59 0.38 16 3 C -0.29 -5.63 9.58 -39.77 -0.38 -6.01 16 4 C 0.30 5.94 7.68 -152.76 -1.17 4.76 16 5 N -0.63 -10.24 5.37 -12.17 -0.07 -10.30 16 6 C 0.57 8.35 7.75 -12.28 -0.10 8.25 16 7 O -0.50 -8.44 13.54 5.32 0.07 -8.37 16 8 C -0.15 -1.79 5.90 -104.73 -0.62 -2.41 16 9 C -0.02 -0.18 9.71 -38.89 -0.38 -0.56 16 10 C -0.12 -1.13 9.62 -39.11 -0.38 -1.51 16 11 C 0.09 0.98 6.75 -82.93 -0.56 0.42 16 12 C 0.58 6.10 8.09 -12.11 -0.10 6.00 16 13 N -0.83 -6.05 8.86 30.64 0.27 -5.78 16 14 O -0.53 -7.07 17.15 5.37 0.09 -6.98 16 15 N -0.46 -4.91 9.52 -9.48 -0.09 -5.00 16 16 C 0.14 1.50 10.71 -17.17 -0.18 1.32 16 17 N -0.34 -7.73 3.62 -61.45 -0.22 -7.95 16 18 C 0.26 6.12 6.02 -5.19 -0.03 6.09 16 19 C -0.54 -14.04 9.39 -34.44 -0.32 -14.37 16 20 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 21 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 22 N -0.89 -23.42 13.29 55.43 0.74 -22.68 16 23 Si 0.91 20.08 29.54 -169.99 -5.02 15.06 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 27 N -0.28 -6.28 12.56 33.64 0.42 -5.86 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.16 3.02 5.83 -52.49 -0.31 2.71 16 32 H 0.42 6.10 6.05 -40.82 -0.25 5.85 16 33 H 0.16 1.40 7.73 -52.48 -0.41 1.00 16 34 H 0.16 1.31 7.63 -52.48 -0.40 0.91 16 35 H 0.41 2.60 8.15 -40.82 -0.33 2.27 16 36 H 0.41 2.17 8.93 -40.82 -0.36 1.80 16 37 H 0.17 1.65 6.41 -52.48 -0.34 1.32 16 38 H 0.06 1.50 8.14 -51.93 -0.42 1.07 16 39 H 0.04 0.99 7.52 -51.93 -0.39 0.60 16 40 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 355.98 15.07 5.36 5.36 Total: -1.00 -32.46 355.98 -6.99 -39.45 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -4.02 Total: 9.52 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -4.53 Total: 3.53 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: 1.05 Total: -57.58 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: 0.16 Total: -15.35 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.46 -6.99 -39.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521010936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.963 kcal (2) G-P(sol) polarization free energy of solvation -32.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds