Wall clock time and date at job start Tue Mar 31 2020 05:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 S 1.65606 * 120.00003 * 180.02562 * 2 1 3 5 5 O 1.42098 * 106.40010 * 203.53824 * 4 2 1 6 6 O 1.42094 * 106.39890 * 336.45188 * 4 2 1 7 7 C 1.76194 * 107.22007 * 89.99703 * 4 2 1 8 8 C 1.35450 * 126.06629 * 269.68802 * 7 4 2 9 9 N 1.35535 * 108.87073 * 179.86746 * 8 7 4 10 10 H 0.97003 * 125.67358 * 180.13257 * 9 8 7 11 11 C 1.37644 * 108.64292 * 0.40295 * 9 8 7 12 12 C 1.46681 * 126.23122 * 179.75624 * 11 9 8 13 13 O 1.21694 * 120.00082 * 179.97438 * 12 11 9 14 14 N 1.34774 * 120.00420 * 359.97438 * 12 11 9 15 15 C 1.46499 * 120.00422 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47082 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.46897 * 179.97438 * 16 15 14 18 18 C 1.50705 * 109.47081 * 179.97438 * 17 16 15 19 19 H 1.08004 * 119.99932 * 359.97438 * 18 17 16 20 20 C 1.37872 * 119.99854 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00631 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99910 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46816 * 59.99949 * 22 20 18 24 24 H 1.48497 * 109.47469 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46945 * 300.00512 * 22 20 18 26 26 C 1.37871 * 107.53570 * 359.75335 * 11 9 8 27 27 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 28 28 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 29 29 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 30 30 H 1.09001 * 109.47274 * 0.02562 * 3 2 1 31 31 H 1.09000 * 109.47166 * 120.00409 * 3 2 1 32 32 H 1.09004 * 109.47230 * 240.00361 * 3 2 1 33 33 H 1.08000 * 125.56463 * 359.97438 * 8 7 4 34 34 H 0.97006 * 119.99752 * 0.02562 * 14 12 11 35 35 H 1.08996 * 109.46897 * 299.99833 * 15 14 12 36 36 H 1.08994 * 109.47285 * 60.00091 * 15 14 12 37 37 H 1.08996 * 109.46930 * 299.99582 * 16 15 14 38 38 H 1.08999 * 109.47561 * 60.00043 * 16 15 14 39 39 H 1.08996 * 109.47034 * 299.99573 * 17 16 15 40 40 H 1.08994 * 109.47332 * 59.99945 * 17 16 15 41 41 H 0.96998 * 120.00611 * 179.97438 * 21 20 18 42 42 H 1.07994 * 126.45587 * 179.97438 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4342 -0.0006 5 8 3.5759 -1.1570 0.5439 6 8 1.4114 -2.4067 0.5435 7 6 2.5537 -1.8852 -1.6838 8 6 1.7264 -2.6417 -2.4440 9 7 2.2625 -2.7685 -3.6823 10 1 1.8702 -3.2599 -4.4210 11 6 3.4592 -2.0892 -3.7154 12 6 4.3622 -1.9794 -4.8661 13 8 5.3971 -1.3465 -4.7692 14 7 4.0460 -2.5794 -6.0307 15 6 4.9481 -2.4702 -7.1797 16 6 4.3580 -3.2353 -8.3660 17 6 5.3000 -3.1207 -9.5662 18 6 4.7190 -3.8748 -10.7345 19 1 3.7728 -4.3852 -10.6312 20 6 5.3955 -3.9132 -11.9353 21 7 6.5479 -3.2922 -12.0611 22 14 4.6758 -4.8486 -13.3833 23 1 3.3524 -4.2741 -13.7352 24 1 5.5899 -4.7373 -14.5483 25 1 4.5130 -6.2786 -13.0172 26 6 3.6544 -1.5308 -2.4701 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5139 29 1 -0.3633 -0.8900 0.5139 30 1 1.4892 2.0973 0.0005 31 1 2.8242 1.3264 0.8899 32 1 2.8241 1.3265 -0.8900 33 1 0.7913 -3.0720 -2.1173 34 1 3.2209 -3.0836 -6.1081 35 1 5.0687 -1.4208 -7.4485 36 1 5.9189 -2.8929 -6.9210 37 1 4.2371 -4.2847 -8.0975 38 1 3.3874 -2.8123 -8.6247 39 1 5.4205 -2.0711 -9.8346 40 1 6.2708 -3.5434 -9.3079 41 1 7.0240 -3.3195 -12.9058 42 1 4.4986 -0.9328 -2.1601 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000521223716.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:20 Heat of formation + Delta-G solvation = -74.121281 kcal Electronic energy + Delta-G solvation = -24978.445413 eV Core-core repulsion = 21086.155926 eV Total energy + Delta-G solvation = -3892.289487 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.77099 -39.16487 -37.45913 -36.50037 -36.03450 -35.62113 -33.50022 -31.98035 -31.29758 -29.83823 -28.48237 -26.87748 -25.04986 -23.90238 -22.62691 -21.96247 -20.86461 -20.49489 -19.11683 -18.87757 -17.71165 -16.59719 -16.54426 -16.28153 -16.08295 -15.71248 -15.47866 -14.83887 -14.73770 -14.68477 -14.52509 -13.92978 -13.72771 -13.70217 -13.45721 -13.07136 -13.02701 -12.60199 -12.36951 -12.29282 -11.97784 -11.95535 -11.88182 -11.85874 -11.55914 -10.95812 -10.86711 -10.71103 -10.27927 -9.99898 -9.98872 -9.53575 -9.48339 -9.22447 -9.12870 -8.77486 -8.44300 -6.08678 -4.12592 0.17364 1.07982 1.62237 2.51261 2.80027 3.10791 3.18699 3.26353 3.31809 3.33195 3.55570 3.98925 4.37624 4.40103 4.43510 4.59814 4.74815 4.96411 5.00464 5.15241 5.21244 5.26924 5.33861 5.42651 5.45274 5.53501 5.53824 5.62761 5.95468 6.00701 6.10982 6.21773 6.25473 6.44978 6.64624 6.76679 6.86532 7.43049 7.54194 7.66079 7.88734 8.08241 8.29341 8.93516 9.51918 11.02437 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.031706 B = 0.001871 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.900109 B =14961.897275 C =15256.192704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.008 6.008 3 C 0.090 3.910 4 S 2.724 3.276 5 O -0.954 6.954 6 O -0.963 6.963 7 C -0.758 4.758 8 C 0.144 3.856 9 N -0.525 5.525 10 H 0.424 0.576 11 C -0.049 4.049 12 C 0.581 3.419 13 O -0.524 6.524 14 N -0.724 5.724 15 C 0.116 3.884 16 C -0.121 4.121 17 C 0.024 3.976 18 C -0.525 4.525 19 H 0.054 0.946 20 C 0.057 3.943 21 N -0.892 5.892 22 Si 0.894 3.106 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.277 1.277 26 C -0.025 4.025 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.190 0.810 34 H 0.392 0.608 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.020 0.980 40 H 0.020 0.980 41 H 0.263 0.737 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.780 6.207 24.975 30.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.847 5.847 3 C -0.055 4.055 4 S 2.813 3.187 5 O -0.944 6.944 6 O -0.954 6.954 7 C -0.852 4.852 8 C 0.000 4.000 9 N -0.119 5.119 10 H 0.263 0.737 11 C -0.161 4.161 12 C 0.367 3.633 13 O -0.400 6.400 14 N -0.375 5.375 15 C -0.006 4.006 16 C -0.159 4.159 17 C -0.013 4.013 18 C -0.564 4.564 19 H 0.073 0.927 20 C -0.144 4.144 21 N -0.531 5.531 22 Si 0.722 3.278 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.050 4.050 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.207 0.793 34 H 0.224 0.776 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.072 0.928 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -14.586 6.219 25.398 29.941 hybrid contribution -1.073 -0.917 -2.183 2.599 sum -15.659 5.302 23.215 28.500 Atomic orbital electron populations 1.21640 0.78243 1.04264 1.02070 1.57338 1.15290 1.21902 1.90146 1.21568 0.96697 0.84818 1.02466 1.00965 0.72785 0.71937 0.72992 1.93576 1.40073 1.84341 1.76405 1.93549 1.66486 1.58600 1.76746 1.31084 1.06658 1.20904 1.26533 1.21842 0.98250 0.96698 0.83255 1.42397 1.17475 1.39721 1.12336 0.73705 1.20848 0.90091 1.07193 0.97946 1.16994 0.85046 0.79902 0.81356 1.90877 1.24535 1.41577 1.82993 1.46129 1.25336 1.53724 1.12266 1.21743 0.92944 1.01740 0.84174 1.21905 1.00585 0.98445 0.94956 1.19024 0.94180 0.97664 0.90472 1.21133 1.06274 1.32762 0.96205 0.92747 1.25032 0.94923 0.95613 0.98869 1.69945 1.14494 1.42822 1.25845 0.86628 0.78920 0.80347 0.81908 1.20250 1.21203 1.20243 1.20915 0.96674 0.97762 0.89644 0.92755 0.90567 0.89841 0.90199 0.91332 0.91895 0.79288 0.77553 0.91288 0.91263 0.92723 0.92746 0.96185 0.96174 0.92772 0.81864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.37 10.63 59.85 0.64 1.00 16 2 N -1.01 -6.78 3.58 -129.20 -0.46 -7.24 16 3 C 0.09 0.51 10.30 59.85 0.62 1.12 16 4 S 2.72 25.70 5.84 -107.50 -0.63 25.07 16 5 O -0.95 -12.09 17.03 -57.18 -0.97 -13.06 16 6 O -0.96 -10.56 16.45 -57.18 -0.94 -11.50 16 7 C -0.76 -7.14 6.18 -39.98 -0.25 -7.38 16 8 C 0.14 1.03 11.63 -16.91 -0.20 0.83 16 9 N -0.52 -3.94 5.99 -9.39 -0.06 -4.00 16 10 H 0.42 1.82 8.19 -40.82 -0.33 1.49 16 11 C -0.05 -0.56 7.06 -81.98 -0.58 -1.14 16 12 C 0.58 8.45 7.79 -12.85 -0.10 8.35 16 13 O -0.52 -9.69 16.88 5.19 0.09 -9.60 16 14 N -0.72 -9.57 5.55 -61.62 -0.34 -9.91 16 15 C 0.12 1.93 5.67 -4.04 -0.02 1.90 16 16 C -0.12 -2.23 5.27 -26.73 -0.14 -2.37 16 17 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 18 C -0.53 -14.31 9.11 -34.44 -0.31 -14.62 16 19 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 22 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 C -0.02 -0.28 10.44 -39.12 -0.41 -0.69 16 27 H 0.05 0.18 8.14 -51.93 -0.42 -0.25 16 28 H 0.08 0.21 7.92 -51.93 -0.41 -0.20 16 29 H 0.08 0.39 7.02 -51.93 -0.36 0.02 16 30 H 0.08 0.27 7.79 -51.93 -0.40 -0.13 16 31 H 0.07 0.40 8.01 -51.93 -0.42 -0.02 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.19 0.66 8.06 -52.49 -0.42 0.23 16 34 H 0.39 3.82 7.60 -40.82 -0.31 3.51 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.16 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 373.82 15.07 5.63 5.63 Total: -1.00 -37.58 373.82 -8.97 -46.55 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -6.01 Total: -1.36 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -0.99 Total: -11.03 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: -0.13 Total: -46.75 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -1.83 Total: -34.16 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 25.70 SS G_CDS: -0.63 Total: 25.07 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.58 -8.97 -46.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521223716.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.575 kcal (2) G-P(sol) polarization free energy of solvation -37.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds