Wall clock time and date at job start Tue Mar 31 2020 05:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 S 1.65606 * 120.00003 * 180.02562 * 2 1 3 5 5 O 1.42098 * 106.40010 * 203.53824 * 4 2 1 6 6 O 1.42094 * 106.39890 * 336.45188 * 4 2 1 7 7 C 1.76194 * 107.22007 * 89.99703 * 4 2 1 8 8 C 1.35450 * 126.06629 * 269.68802 * 7 4 2 9 9 N 1.35535 * 108.87073 * 179.86746 * 8 7 4 10 10 H 0.97003 * 125.67358 * 180.13257 * 9 8 7 11 11 C 1.37644 * 108.64292 * 0.40295 * 9 8 7 12 12 C 1.46681 * 126.23122 * 179.75624 * 11 9 8 13 13 O 1.21694 * 120.00082 * 179.97438 * 12 11 9 14 14 N 1.34774 * 120.00420 * 359.97438 * 12 11 9 15 15 C 1.46499 * 120.00422 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47082 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.46897 * 179.97438 * 16 15 14 18 18 C 1.50705 * 109.47081 * 179.97438 * 17 16 15 19 19 H 1.08004 * 119.99932 * 359.97438 * 18 17 16 20 20 C 1.37872 * 119.99854 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00631 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99910 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46816 * 59.99949 * 22 20 18 24 24 H 1.48497 * 109.47469 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46945 * 300.00512 * 22 20 18 26 26 C 1.37871 * 107.53570 * 359.75335 * 11 9 8 27 27 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 28 28 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 29 29 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 30 30 H 1.09001 * 109.47274 * 0.02562 * 3 2 1 31 31 H 1.09000 * 109.47166 * 120.00409 * 3 2 1 32 32 H 1.09004 * 109.47230 * 240.00361 * 3 2 1 33 33 H 1.08000 * 125.56463 * 359.97438 * 8 7 4 34 34 H 0.97006 * 119.99752 * 0.02562 * 14 12 11 35 35 H 1.08996 * 109.46897 * 299.99833 * 15 14 12 36 36 H 1.08994 * 109.47285 * 60.00091 * 15 14 12 37 37 H 1.08996 * 109.46930 * 299.99582 * 16 15 14 38 38 H 1.08999 * 109.47561 * 60.00043 * 16 15 14 39 39 H 1.08996 * 109.47034 * 299.99573 * 17 16 15 40 40 H 1.08994 * 109.47332 * 59.99945 * 17 16 15 41 41 H 0.96998 * 120.00611 * 179.97438 * 21 20 18 42 42 H 1.07994 * 126.45587 * 179.97438 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4342 -0.0006 5 8 3.5759 -1.1570 0.5439 6 8 1.4114 -2.4067 0.5435 7 6 2.5537 -1.8852 -1.6838 8 6 1.7264 -2.6417 -2.4440 9 7 2.2625 -2.7685 -3.6823 10 1 1.8702 -3.2599 -4.4210 11 6 3.4592 -2.0892 -3.7154 12 6 4.3622 -1.9794 -4.8661 13 8 5.3971 -1.3465 -4.7692 14 7 4.0460 -2.5794 -6.0307 15 6 4.9481 -2.4702 -7.1797 16 6 4.3580 -3.2353 -8.3660 17 6 5.3000 -3.1207 -9.5662 18 6 4.7190 -3.8748 -10.7345 19 1 3.7728 -4.3852 -10.6312 20 6 5.3955 -3.9132 -11.9353 21 7 6.5479 -3.2922 -12.0611 22 14 4.6758 -4.8486 -13.3833 23 1 3.3524 -4.2741 -13.7352 24 1 5.5899 -4.7373 -14.5483 25 1 4.5130 -6.2786 -13.0172 26 6 3.6544 -1.5308 -2.4701 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5139 29 1 -0.3633 -0.8900 0.5139 30 1 1.4892 2.0973 0.0005 31 1 2.8242 1.3264 0.8899 32 1 2.8241 1.3265 -0.8900 33 1 0.7913 -3.0720 -2.1173 34 1 3.2209 -3.0836 -6.1081 35 1 5.0687 -1.4208 -7.4485 36 1 5.9189 -2.8929 -6.9210 37 1 4.2371 -4.2847 -8.0975 38 1 3.3874 -2.8123 -8.6247 39 1 5.4205 -2.0711 -9.8346 40 1 6.2708 -3.5434 -9.3079 41 1 7.0240 -3.3195 -12.9058 42 1 4.4986 -0.9328 -2.1601 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000521223716.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:19 Heat of formation + Delta-G solvation = -104.237063 kcal Electronic energy + Delta-G solvation = -24979.751331 eV Core-core repulsion = 21086.155926 eV Total energy + Delta-G solvation = -3893.595405 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.55784 -40.33237 -38.27475 -37.08845 -37.01182 -36.82105 -35.30302 -33.32342 -32.43765 -30.81682 -28.86694 -28.56268 -25.54944 -25.44195 -23.64747 -22.93696 -22.40559 -21.39059 -20.15837 -19.59202 -18.55452 -18.36663 -17.31560 -17.08074 -17.05688 -16.91305 -16.61597 -16.42016 -15.87996 -15.34598 -15.25773 -14.96973 -14.91957 -14.67022 -14.27911 -14.02273 -13.82892 -13.74099 -13.56359 -13.51108 -13.16779 -13.12860 -12.74145 -12.60027 -12.51183 -12.50048 -12.45723 -12.31269 -11.74630 -11.72245 -11.35140 -11.15633 -10.70898 -10.56726 -10.36093 -9.96823 -9.63074 -8.21128 -6.32982 -0.52198 0.23212 0.86678 1.40706 1.43409 1.51361 1.79643 2.00837 2.09195 2.24528 2.40730 2.84815 3.12686 3.26959 3.68703 3.97044 3.97775 4.04659 4.10563 4.15407 4.39521 4.48478 4.58353 4.62337 4.70679 4.84831 4.88317 4.88797 5.02472 5.07865 5.11000 5.12679 5.17507 5.26648 5.40406 5.48764 5.65822 5.67185 5.81653 6.18052 6.20116 6.39878 6.84475 6.98302 7.36821 8.90632 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.031706 B = 0.001871 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.900109 B =14961.897275 C =15256.192704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -1.004 6.004 3 C 0.081 3.919 4 S 2.739 3.261 5 O -0.994 6.994 6 O -0.979 6.979 7 C -0.773 4.773 8 C 0.174 3.826 9 N -0.509 5.509 10 H 0.442 0.558 11 C -0.068 4.068 12 C 0.582 3.418 13 O -0.574 6.574 14 N -0.709 5.709 15 C 0.129 3.871 16 C -0.101 4.101 17 C 0.022 3.978 18 C -0.541 4.541 19 H 0.068 0.932 20 C -0.004 4.004 21 N -0.935 5.935 22 Si 0.967 3.033 23 H -0.265 1.265 24 H -0.288 1.288 25 H -0.266 1.266 26 C -0.036 4.036 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.236 0.764 34 H 0.412 0.588 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.071 0.929 39 H -0.007 1.007 40 H -0.008 1.008 41 H 0.263 0.737 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.466 5.155 25.192 32.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.845 5.845 3 C -0.064 4.064 4 S 2.829 3.171 5 O -0.985 6.985 6 O -0.969 6.969 7 C -0.867 4.867 8 C 0.029 3.971 9 N -0.105 5.105 10 H 0.284 0.716 11 C -0.180 4.180 12 C 0.370 3.630 13 O -0.453 6.453 14 N -0.361 5.361 15 C 0.005 3.995 16 C -0.139 4.139 17 C -0.015 4.015 18 C -0.579 4.579 19 H 0.086 0.914 20 C -0.202 4.202 21 N -0.575 5.575 22 Si 0.792 3.208 23 H -0.189 1.189 24 H -0.213 1.213 25 H -0.190 1.190 26 C -0.062 4.062 27 H 0.089 0.911 28 H 0.113 0.887 29 H 0.100 0.900 30 H 0.125 0.875 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.252 0.748 34 H 0.249 0.751 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.011 0.989 40 H 0.010 0.990 41 H 0.072 0.928 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -18.332 5.130 25.612 31.912 hybrid contribution 0.027 -0.538 -2.173 2.239 sum -18.305 4.592 23.439 30.093 Atomic orbital electron populations 1.21906 0.76490 1.05188 1.03498 1.57155 1.16321 1.21099 1.89924 1.21733 0.97420 0.85154 1.02051 1.00275 0.71868 0.72172 0.72761 1.93523 1.42379 1.85058 1.77500 1.93521 1.66508 1.59660 1.77207 1.31043 1.06732 1.22306 1.26569 1.22569 0.98497 0.93968 0.82103 1.42299 1.15957 1.38974 1.13246 0.71578 1.20256 0.91607 1.09482 0.96636 1.17333 0.84777 0.78861 0.82003 1.90850 1.26837 1.43762 1.83867 1.45793 1.25538 1.53740 1.10987 1.21327 0.92885 1.00459 0.84795 1.21600 0.99587 0.99779 0.92908 1.18946 0.94374 0.95431 0.92775 1.21640 1.06719 1.32605 0.96982 0.91394 1.26038 0.95270 0.96642 1.02275 1.70101 1.16151 1.44579 1.26654 0.85466 0.78317 0.79227 0.77813 1.18928 1.21325 1.19043 1.20968 0.97131 0.97758 0.90334 0.91076 0.88658 0.90007 0.87461 0.92000 0.92275 0.74816 0.75149 0.92680 0.92879 0.91189 0.91036 0.98887 0.99004 0.92814 0.83304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.45 10.63 127.77 1.36 1.80 16 2 N -1.00 -11.90 3.58 -562.67 -2.02 -13.92 16 3 C 0.08 0.83 10.30 127.77 1.32 2.15 16 4 S 2.74 49.24 5.84 -56.49 -0.33 48.91 16 5 O -0.99 -25.82 17.03 -128.00 -2.18 -28.00 16 6 O -0.98 -19.80 16.45 -128.00 -2.11 -21.91 16 7 C -0.77 -13.31 6.18 22.01 0.14 -13.18 16 8 C 0.17 1.85 11.63 83.48 0.97 2.82 16 9 N -0.51 -6.04 5.99 -183.62 -1.10 -7.14 16 10 H 0.44 2.01 8.19 -92.71 -0.76 1.25 16 11 C -0.07 -1.50 7.06 40.35 0.28 -1.21 16 12 C 0.58 16.90 7.79 86.45 0.67 17.57 16 13 O -0.57 -22.11 16.88 -4.33 -0.07 -22.18 16 14 N -0.71 -17.98 5.55 -467.09 -2.59 -20.57 16 15 C 0.13 4.30 5.67 86.38 0.49 4.79 16 16 C -0.10 -3.63 5.27 30.59 0.16 -3.47 16 17 C 0.02 1.13 4.97 29.85 0.15 1.28 16 18 C -0.54 -29.35 9.11 25.60 0.23 -29.12 16 19 H 0.07 3.42 7.74 -2.91 -0.02 3.39 16 20 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 21 N -0.93 -56.37 13.29 21.44 0.28 -56.09 16 22 Si 0.97 42.83 29.54 68.60 2.03 44.86 16 23 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 24 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 26 C -0.04 -0.82 10.44 22.57 0.24 -0.59 16 27 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 28 H 0.09 0.24 7.92 -2.39 -0.02 0.22 16 29 H 0.08 0.55 7.02 -2.38 -0.02 0.53 16 30 H 0.11 0.49 7.79 -2.39 -0.02 0.47 16 31 H 0.06 0.71 8.01 -2.39 -0.02 0.69 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.24 0.33 8.06 -2.91 -0.02 0.30 16 34 H 0.41 6.95 7.60 -92.70 -0.70 6.25 16 35 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 39 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 40 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 41 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 42 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -84.31 373.82 -2.03 -86.34 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -0.41 Total: 6.63 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: 6.47 Total: -16.92 kcal Atomic # 7 Polarization: -92.29 SS G_CDS: -5.43 Total: -97.72 kcal Atomic # 8 Polarization: -67.74 SS G_CDS: -4.36 Total: -72.10 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 16 Polarization: 49.24 SS G_CDS: -0.33 Total: 48.91 kcal Total: -84.31 -2.03 -86.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000521223716.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.894 kcal (2) G-P(sol) polarization free energy of solvation -84.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds