Wall clock time and date at job start Tue Mar 31 2020 05:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39713 * 125.77652 * 2 1 4 4 C 1.36165 * 107.86250 * 180.11959 * 3 2 1 5 5 N 1.39326 * 126.27048 * 179.90686 * 4 3 2 6 6 C 1.34777 * 119.99760 * 359.40765 * 5 4 3 7 7 O 1.21523 * 119.99904 * 0.28165 * 6 5 4 8 8 C 1.48276 * 120.00096 * 180.27647 * 6 5 4 9 9 C 1.39337 * 119.57108 * 180.02562 * 8 6 5 10 10 C 1.38432 * 119.18380 * 179.97438 * 9 8 6 11 11 C 1.39885 * 118.35969 * 0.02562 * 10 9 8 12 12 C 1.47991 * 120.45592 * 180.02562 * 11 10 9 13 13 N 1.34781 * 120.00032 * 179.97438 * 12 11 10 14 14 O 1.21534 * 120.00107 * 359.97438 * 12 11 10 15 15 C 1.39719 * 119.08262 * 359.97438 * 11 10 9 16 16 N 1.31421 * 120.72165 * 359.74668 * 15 11 10 17 17 N 1.35821 * 107.46459 * 359.64047 * 4 3 2 18 18 C 1.46506 * 126.09514 * 180.20520 * 17 4 3 19 19 C 1.50703 * 109.46968 * 89.99866 * 18 17 4 20 20 H 1.07999 * 120.00193 * 0.02562 * 19 18 17 21 21 C 1.37874 * 119.99860 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00208 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00125 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47371 * 89.99797 * 23 21 19 25 25 H 1.48497 * 109.47133 * 210.00010 * 23 21 19 26 26 H 1.48501 * 109.46589 * 329.99963 * 23 21 19 27 27 N 1.30839 * 125.77567 * 179.70907 * 2 1 3 28 28 H 1.09001 * 109.47240 * 270.25768 * 1 2 3 29 29 H 1.08996 * 109.47691 * 30.26172 * 1 2 3 30 30 H 1.09005 * 109.47157 * 150.26658 * 1 2 3 31 31 H 1.08007 * 126.07242 * 0.02562 * 3 2 1 32 32 H 0.97001 * 120.00451 * 179.69285 * 5 4 3 33 33 H 1.07992 * 120.40610 * 359.95612 * 9 8 6 34 34 H 1.07997 * 120.81387 * 180.02562 * 10 9 8 35 35 H 0.97002 * 119.99790 * 0.02562 * 13 12 11 36 36 H 0.96997 * 119.99849 * 179.97438 * 13 12 11 37 37 H 1.08005 * 119.64254 * 179.97438 * 15 11 10 38 38 H 1.08991 * 109.46814 * 209.99807 * 18 17 4 39 39 H 1.08994 * 109.46988 * 330.00066 * 18 17 4 40 40 H 0.96995 * 120.00135 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3238 1.1335 0.0000 4 6 3.6194 0.7147 -0.0027 5 7 4.7492 1.5300 -0.0054 6 6 4.6126 2.8707 -0.0177 7 8 3.5040 3.3685 -0.0211 8 6 5.8149 3.7384 -0.0268 9 6 5.6633 5.1235 -0.0388 10 6 6.7913 5.9260 -0.0467 11 6 8.0463 5.3082 -0.0428 12 6 9.2827 6.1214 -0.0504 13 7 10.4872 5.5166 -0.0460 14 8 9.2120 7.3346 -0.0605 15 6 8.1163 3.9128 -0.0306 16 7 7.0217 3.1857 -0.0178 17 7 3.6088 -0.6435 0.0038 18 6 4.7858 -1.5158 0.0079 19 6 5.1895 -1.8081 1.4302 20 1 4.6254 -1.3866 2.2491 21 6 6.2782 -2.6144 1.6859 22 7 6.9648 -3.1281 0.6887 23 14 6.7781 -2.9774 3.4488 24 1 6.0766 -4.1980 3.9211 25 1 8.2458 -3.1941 3.5125 26 1 6.4094 -1.8284 4.3143 27 7 2.2719 -1.0615 0.0054 28 1 -0.3634 0.0046 1.0277 29 1 -0.3634 0.8876 -0.5179 30 1 -0.3634 -0.8924 -0.5097 31 1 1.9873 2.1598 0.0004 32 1 5.6341 1.1327 -0.0028 33 1 4.6780 5.5654 -0.0423 34 1 6.7043 7.0024 -0.0557 35 1 10.5436 4.5482 -0.0383 36 1 11.2976 6.0496 -0.0513 37 1 9.0806 3.4264 -0.0279 38 1 4.5477 -2.4496 -0.5014 39 1 5.6076 -1.0196 -0.5083 40 1 7.7305 -3.6957 0.8687 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000523345785.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:51 Heat of formation + Delta-G solvation = 43.740965 kcal Electronic energy + Delta-G solvation = -26713.825993 eV Core-core repulsion = 22723.496196 eV Total energy + Delta-G solvation = -3990.329797 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.31216 -40.67175 -39.55572 -38.57159 -34.89772 -34.37535 -33.81890 -32.98550 -32.06140 -31.77378 -29.18821 -28.36822 -26.08618 -25.83130 -24.05725 -23.00638 -22.29177 -21.13674 -19.85717 -19.61548 -18.67202 -17.77166 -17.44887 -16.82088 -16.50721 -16.24068 -15.63139 -15.51898 -15.18872 -15.16300 -14.72683 -14.35049 -14.22066 -14.04887 -13.57744 -13.56265 -13.08053 -12.86024 -12.77492 -12.52423 -12.06958 -11.81065 -11.57886 -11.08969 -10.90053 -10.83565 -10.46091 -10.41119 -10.40607 -10.30761 -10.21541 -9.85746 -9.81776 -9.67606 -9.62941 -8.71196 -7.93395 -7.49594 -6.32620 -4.40763 -0.15210 0.77885 1.95541 2.52618 2.63171 2.93620 3.03800 3.16923 3.23550 3.28013 3.44952 3.57426 3.67841 3.80075 4.24213 4.25075 4.30761 4.46952 4.54356 4.74650 5.00902 5.22008 5.33458 5.47715 5.51698 5.63099 5.99669 6.02528 6.12879 6.14670 6.22827 6.26604 6.35580 6.60094 6.77755 6.83923 7.02661 7.22132 7.48077 7.55433 7.60992 7.71217 7.79198 7.82239 8.18275 8.59679 8.69537 9.26568 10.74667 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.009328 B = 0.003717 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3001.000635 B = 7531.214828 C =10066.049525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.290 4.290 4 C 0.296 3.704 5 N -0.615 5.615 6 C 0.573 3.427 7 O -0.503 6.503 8 C 0.115 3.885 9 C -0.115 4.115 10 C -0.019 4.019 11 C -0.177 4.177 12 C 0.571 3.429 13 N -0.847 5.847 14 O -0.535 6.535 15 C 0.139 3.861 16 N -0.455 5.455 17 N -0.343 5.343 18 C 0.256 3.744 19 C -0.540 4.540 20 H 0.065 0.935 21 C 0.068 3.932 22 N -0.889 5.889 23 Si 0.906 3.094 24 H -0.276 1.276 25 H -0.283 1.283 26 H -0.272 1.272 27 N -0.280 5.280 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.162 0.838 32 H 0.427 0.573 33 H 0.161 0.839 34 H 0.157 0.843 35 H 0.404 0.596 36 H 0.409 0.591 37 H 0.168 0.832 38 H 0.057 0.943 39 H 0.046 0.954 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.024 15.825 -2.926 16.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.322 4.322 4 C 0.074 3.926 5 N -0.262 5.262 6 C 0.357 3.643 7 O -0.376 6.376 8 C -0.023 4.023 9 C -0.136 4.136 10 C -0.045 4.045 11 C -0.182 4.182 12 C 0.356 3.644 13 N -0.411 5.411 14 O -0.412 6.412 15 C -0.023 4.023 16 N -0.166 5.166 17 N -0.129 5.129 18 C 0.139 3.861 19 C -0.578 4.578 20 H 0.083 0.917 21 C -0.136 4.136 22 N -0.527 5.527 23 Si 0.733 3.267 24 H -0.202 1.202 25 H -0.209 1.209 26 H -0.197 1.197 27 N -0.106 5.106 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.180 0.820 32 H 0.266 0.734 33 H 0.179 0.821 34 H 0.175 0.825 35 H 0.234 0.766 36 H 0.240 0.760 37 H 0.185 0.815 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.389 14.546 -2.966 15.227 hybrid contribution 1.510 0.787 0.983 1.967 sum 4.899 15.333 -1.983 16.219 Atomic orbital electron populations 1.20025 0.87506 1.02375 1.02195 1.22015 0.96565 0.90949 1.01985 1.21273 0.89017 1.00503 1.21425 1.18000 0.87749 0.83448 1.03381 1.42478 1.09152 1.05068 1.69456 1.17680 0.87698 0.81248 0.77635 1.90740 1.24709 1.73979 1.48172 1.21213 0.91462 0.92173 0.97492 1.22154 1.01135 0.92652 0.97628 1.21772 0.90058 1.01762 0.90933 1.21133 0.94949 0.95309 1.06808 1.18017 0.83628 0.87197 0.75583 1.43740 1.07974 1.11886 1.77506 1.90838 1.87202 1.13687 1.49467 1.22968 0.97342 0.89220 0.92723 1.67635 0.97918 1.40456 1.10569 1.49540 1.06519 1.01996 1.54852 1.19654 0.77799 0.89701 0.98982 1.21330 1.13378 1.31838 0.91284 0.91724 1.24914 0.95633 0.94872 0.98132 1.69917 1.19233 1.32460 1.31095 0.86361 0.77616 0.79041 0.83718 1.20223 1.20850 1.19720 1.77346 0.86141 1.21823 1.25262 0.91280 0.91108 0.91517 0.82049 0.73391 0.82143 0.82509 0.76600 0.75978 0.81525 0.92478 0.93657 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.44 36.01 0.38 -0.53 16 2 C 0.05 0.99 7.20 -82.46 -0.59 0.39 16 3 C -0.29 -5.87 9.58 -39.78 -0.38 -6.26 16 4 C 0.30 6.29 7.68 -152.78 -1.17 5.12 16 5 N -0.62 -11.26 5.40 -12.08 -0.07 -11.33 16 6 C 0.57 9.32 7.78 -12.13 -0.09 9.22 16 7 O -0.50 -8.80 13.44 5.35 0.07 -8.73 16 8 C 0.11 1.50 6.75 -82.94 -0.56 0.94 16 9 C -0.11 -1.20 9.62 -39.10 -0.38 -1.58 16 10 C -0.02 -0.17 9.71 -38.89 -0.38 -0.55 16 11 C -0.18 -1.59 5.90 -104.73 -0.62 -2.21 16 12 C 0.57 5.10 8.06 -12.26 -0.10 5.00 16 13 N -0.85 -4.23 8.83 30.56 0.27 -3.96 16 14 O -0.53 -6.70 17.25 5.34 0.09 -6.61 16 15 C 0.14 1.26 10.71 -17.17 -0.18 1.08 16 16 N -0.46 -5.64 9.52 -9.49 -0.09 -5.73 16 17 N -0.34 -8.07 3.62 -61.45 -0.22 -8.30 16 18 C 0.26 6.43 6.02 -5.19 -0.03 6.40 16 19 C -0.54 -14.54 9.39 -34.44 -0.32 -14.86 16 20 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 21 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 22 N -0.89 -24.18 13.29 55.43 0.74 -23.44 16 23 Si 0.91 20.64 29.54 -169.99 -5.02 15.62 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 N -0.28 -6.49 12.56 33.64 0.42 -6.07 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.16 3.11 5.83 -52.48 -0.31 2.80 16 32 H 0.43 7.67 7.31 -40.82 -0.30 7.37 16 33 H 0.16 1.48 7.63 -52.49 -0.40 1.08 16 34 H 0.16 1.22 7.73 -52.49 -0.41 0.82 16 35 H 0.40 1.05 6.89 -40.82 -0.28 0.77 16 36 H 0.41 1.52 8.93 -40.82 -0.36 1.16 16 37 H 0.17 0.90 6.41 -52.48 -0.34 0.57 16 38 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 39 H 0.05 1.11 7.52 -51.93 -0.39 0.72 16 40 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 355.98 15.07 5.36 5.36 Total: -1.00 -34.12 355.98 -6.99 -41.11 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -4.02 Total: 8.19 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: -4.53 Total: 3.88 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: 1.05 Total: -58.83 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: 0.16 Total: -15.33 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.12 -6.99 -41.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523345785.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.852 kcal (2) G-P(sol) polarization free energy of solvation -34.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds