Wall clock time and date at job start Tue Mar 31 2020 06:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 120.00044 * 2 1 4 4 C 1.50700 * 109.47154 * 270.00521 * 3 2 1 5 5 H 1.07999 * 120.00072 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00124 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99857 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00283 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47061 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47418 * 120.00218 * 8 6 4 11 11 H 1.48504 * 109.47360 * 240.00005 * 8 6 4 12 12 C 1.34775 * 120.00198 * 180.02562 * 2 1 3 13 13 O 1.21368 * 120.00355 * 183.62012 * 12 2 1 14 14 C 1.49328 * 119.99977 * 3.62007 * 12 2 1 15 15 O 1.21399 * 120.00115 * 354.16599 * 14 12 2 16 16 N 1.34777 * 119.99743 * 174.44711 * 14 12 2 17 17 C 1.40440 * 119.99627 * 179.71946 * 16 14 12 18 18 C 1.40439 * 126.09516 * 359.69545 * 17 16 14 19 19 N 1.30791 * 108.37628 * 179.87423 * 18 17 16 20 20 N 1.40067 * 108.41658 * 0.37681 * 19 18 17 21 21 C 1.39776 * 126.06128 * 179.73155 * 20 19 18 22 22 C 1.38953 * 119.68676 * 359.76102 * 21 20 19 23 23 C 1.38413 * 119.10730 * 179.75448 * 22 21 20 24 24 C 1.38802 * 118.48071 * 0.50011 * 23 22 21 25 25 C 1.38125 * 119.29564 * 359.73803 * 24 23 22 26 26 N 1.31892 * 120.84147 * 0.02562 * 25 24 23 27 27 C 1.35813 * 126.09307 * 179.97438 * 17 16 14 28 28 H 1.09003 * 109.46328 * 263.99228 * 1 2 3 29 29 H 1.08990 * 109.47437 * 23.99175 * 1 2 3 30 30 H 1.08998 * 109.47035 * 143.99491 * 1 2 3 31 31 H 1.09001 * 109.46885 * 30.00102 * 3 2 1 32 32 H 1.08997 * 109.47648 * 150.00355 * 3 2 1 33 33 H 0.97006 * 119.99693 * 179.97438 * 7 6 4 34 34 H 0.96994 * 120.00110 * 359.72521 * 16 14 12 35 35 H 1.08007 * 125.80827 * 0.03005 * 18 17 16 36 36 H 1.08006 * 120.45141 * 359.97438 * 22 21 20 37 37 H 1.07995 * 120.76092 * 180.26469 * 23 22 21 38 38 H 1.07998 * 120.35414 * 179.70709 * 24 23 22 39 39 H 1.08000 * 119.57387 * 179.97438 * 25 24 23 40 40 H 1.08000 * 126.24218 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1259 2.8780 -1.6728 7 7 3.5533 3.6181 -0.6731 8 14 3.4365 3.4177 -3.4339 9 1 2.8596 2.4172 -4.3673 10 1 2.7985 4.7383 -3.6668 11 1 4.8990 3.5265 -3.6677 12 6 2.1389 -1.1672 -0.0005 13 8 3.3508 -1.1683 0.0658 14 6 1.3946 -2.4591 -0.0828 15 8 0.1813 -2.4642 -0.0423 16 7 2.0700 -3.6199 -0.1962 17 6 1.3701 -4.8354 -0.2676 18 6 -0.0251 -4.9903 -0.2267 19 7 -0.3013 -6.2652 -0.3218 20 7 0.9035 -6.9730 -0.4182 21 6 1.0362 -8.3599 -0.5303 22 6 -0.0992 -9.1607 -0.5482 23 6 0.0460 -10.5323 -0.6648 24 6 1.3281 -11.0574 -0.7492 25 6 2.4121 -10.2018 -0.7200 26 7 2.2420 -8.8983 -0.6129 27 6 1.9221 -6.0708 -0.3832 28 1 -0.3632 -0.1076 1.0221 29 1 -0.3634 0.9388 -0.4178 30 1 -0.3633 -0.8313 -0.6041 31 1 1.6084 2.0283 0.5139 32 1 3.1500 1.1384 0.5137 33 1 4.0302 4.4441 -0.8504 34 1 3.0394 -3.6158 -0.2284 35 1 -0.7472 -4.1923 -0.1350 36 1 -1.0820 -8.7187 -0.4758 37 1 -0.8184 -11.1794 -0.6858 38 1 1.4765 -12.1235 -0.8362 39 1 3.4117 -10.6056 -0.7850 40 1 2.9769 -6.2964 -0.4371 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000538237013.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:02 Heat of formation + Delta-G solvation = 81.941969 kcal Electronic energy + Delta-G solvation = -26308.357410 eV Core-core repulsion = 22319.684133 eV Total energy + Delta-G solvation = -3988.673277 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.97211 -40.58782 -39.96922 -37.96705 -35.72690 -34.54254 -33.60767 -32.82890 -32.59089 -30.43160 -29.18559 -28.04063 -26.23102 -24.85292 -24.28243 -23.87820 -22.45226 -21.70838 -20.66393 -19.52485 -18.51572 -17.28875 -16.90598 -16.78397 -16.63629 -16.02945 -16.00538 -15.62661 -15.40226 -15.17346 -14.75986 -14.40226 -14.34294 -14.13827 -13.67207 -13.57724 -13.17082 -13.02552 -12.51584 -12.41677 -12.15172 -11.97986 -11.34885 -11.32071 -11.24405 -10.99329 -10.75199 -10.58221 -10.50194 -10.32493 -10.22909 -10.12547 -9.67367 -9.14495 -8.83720 -8.50297 -7.96956 -7.77040 -6.11482 -4.17030 0.26140 0.71767 1.53472 1.73725 1.88667 2.65018 2.70351 3.27180 3.34732 3.35893 3.39266 3.73467 3.86371 4.06020 4.13392 4.39167 4.41249 4.54919 4.59956 4.75383 4.80647 4.87964 5.16342 5.23436 5.25373 5.31199 5.52542 5.68736 5.81658 5.98076 6.02505 6.13199 6.43645 6.59241 6.75128 6.80519 7.01158 7.18986 7.27302 7.36088 7.54398 7.81294 7.90275 8.11453 8.18238 8.60126 8.88252 9.48198 10.96677 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.026534 B = 0.002138 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.990592 B =13095.895510 C =13500.804259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.560 5.560 3 C 0.240 3.760 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.498 3.502 13 O -0.525 6.525 14 C 0.513 3.487 15 O -0.511 6.511 16 N -0.620 5.620 17 C 0.017 3.983 18 C 0.079 3.921 19 N -0.276 5.276 20 N -0.325 5.325 21 C 0.382 3.618 22 C -0.168 4.168 23 C -0.050 4.050 24 C -0.193 4.193 25 C 0.135 3.865 26 N -0.509 5.509 27 C 0.042 3.958 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.041 0.959 32 H 0.049 0.951 33 H 0.264 0.736 34 H 0.425 0.575 35 H 0.220 0.780 36 H 0.149 0.851 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.167 0.833 40 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.494 -27.694 1.319 28.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.291 5.291 3 C 0.122 3.878 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.728 3.272 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.278 3.722 13 O -0.403 6.403 14 C 0.297 3.703 15 O -0.386 6.386 16 N -0.266 5.266 17 C -0.087 4.087 18 C -0.111 4.111 19 N -0.094 5.094 20 N -0.105 5.105 21 C 0.155 3.845 22 C -0.191 4.191 23 C -0.077 4.077 24 C -0.214 4.214 25 C -0.023 4.023 26 N -0.223 5.223 27 C -0.101 4.101 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.263 0.737 35 H 0.236 0.764 36 H 0.167 0.833 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.184 0.816 40 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -6.788 -27.767 1.413 28.620 hybrid contribution 0.697 0.534 -0.972 1.310 sum -6.092 -27.233 0.440 27.910 Atomic orbital electron populations 1.22239 0.79467 1.04011 1.01816 1.48112 1.07693 1.06695 1.66599 1.19546 0.92861 0.77318 0.98098 1.21423 1.36943 1.06634 0.91934 0.92168 1.24939 0.95187 0.96247 0.97667 1.69943 1.38085 1.14303 1.30748 0.86395 0.78085 0.78409 0.84272 1.19731 1.20862 1.20802 1.19398 0.87462 0.84283 0.81027 1.90747 1.13032 1.86619 1.49922 1.20907 0.87628 0.85385 0.76371 1.90505 1.13813 1.86385 1.47912 1.42578 1.11183 1.02473 1.70410 1.17787 0.92148 0.85795 1.12966 1.24905 0.95147 0.93932 0.97140 1.77475 1.02873 1.04846 1.24237 1.45199 1.05031 1.02999 1.57235 1.17634 0.90260 0.80765 0.95882 1.21639 0.99460 0.93863 1.04091 1.21535 0.98154 0.94143 0.93834 1.22158 0.93351 1.01865 1.04000 1.22543 0.99881 0.86413 0.93454 1.66880 1.23617 1.15412 1.16370 1.22090 0.95570 0.87119 1.05343 0.93208 0.91139 0.88847 0.94098 0.93257 0.92614 0.73727 0.76446 0.83296 0.83854 0.84075 0.81630 0.79493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.19 9.55 59.85 0.57 1.76 16 2 N -0.56 -12.03 2.86 -183.52 -0.52 -12.56 16 3 C 0.24 6.16 5.16 -5.19 -0.03 6.13 16 4 C -0.53 -14.75 9.39 -34.44 -0.32 -15.07 16 5 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 8 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.50 10.23 7.73 -11.64 -0.09 10.14 16 13 O -0.53 -12.12 16.05 5.48 0.09 -12.03 16 14 C 0.51 8.59 7.74 -11.64 -0.09 8.50 16 15 O -0.51 -8.40 10.28 5.45 0.06 -8.34 16 16 N -0.62 -8.73 5.45 -10.48 -0.06 -8.78 16 17 C 0.02 0.23 6.90 -83.95 -0.58 -0.35 16 18 C 0.08 1.07 10.84 -17.17 -0.19 0.88 16 19 N -0.28 -3.69 11.82 30.74 0.36 -3.33 16 20 N -0.33 -4.12 3.81 -11.93 -0.05 -4.16 16 21 C 0.38 4.25 7.55 -154.40 -1.17 3.09 16 22 C -0.17 -1.49 9.70 -39.25 -0.38 -1.87 16 23 C -0.05 -0.30 10.17 -39.31 -0.40 -0.70 16 24 C -0.19 -1.00 10.11 -39.41 -0.40 -1.40 16 25 C 0.13 0.91 11.18 -17.57 -0.20 0.71 16 26 N -0.51 -5.16 9.86 -12.30 -0.12 -5.28 16 27 C 0.04 0.51 11.13 -16.52 -0.18 0.32 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 1.22 8.03 -51.93 -0.42 0.81 16 30 H 0.09 1.57 5.35 -51.94 -0.28 1.29 16 31 H 0.04 1.06 8.07 -51.93 -0.42 0.64 16 32 H 0.05 1.39 7.37 -51.93 -0.38 1.01 16 33 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.42 5.41 8.31 -40.82 -0.34 5.07 16 35 H 0.22 2.91 5.91 -52.48 -0.31 2.60 16 36 H 0.15 1.29 7.69 -52.48 -0.40 0.89 16 37 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 38 H 0.14 0.31 8.06 -52.49 -0.42 -0.11 16 39 H 0.17 0.61 8.06 -52.49 -0.42 0.19 16 40 H 0.19 1.83 8.05 -52.49 -0.42 1.41 16 LS Contribution 354.08 15.07 5.34 5.34 Total: -1.00 -33.37 354.08 -6.94 -40.31 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -4.21 Total: 3.77 kcal Atomic # 6 Polarization: 17.33 SS G_CDS: -3.55 Total: 13.79 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: 0.35 Total: -59.32 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: 0.14 Total: -20.37 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.37 -6.94 -40.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000538237013.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.251 kcal (2) G-P(sol) polarization free energy of solvation -33.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds