Wall clock time and date at job start Tue Mar 31 2020 05:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00089 * 2 1 4 4 H 1.48506 * 109.47089 * 269.99503 * 3 2 1 5 5 H 1.48493 * 109.47313 * 29.99689 * 3 2 1 6 6 H 1.48506 * 109.47533 * 149.99919 * 3 2 1 7 7 C 1.37881 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99898 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99744 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.47064 * 180.02562 * 9 7 2 11 11 C 1.36339 * 125.86015 * 84.97376 * 10 9 7 12 12 C 1.35131 * 108.91920 * 180.02562 * 11 10 9 13 13 C 1.41024 * 108.23163 * 0.02562 * 12 11 10 14 14 N 1.33163 * 126.36372 * 179.97438 * 13 12 11 15 15 C 1.33520 * 120.00103 * 0.02562 * 14 13 12 16 16 O 1.21815 * 119.99822 * 359.97438 * 15 14 13 17 17 C 1.48581 * 119.99919 * 180.02562 * 15 14 13 18 18 C 1.39179 * 120.51111 * 180.02562 * 17 15 14 19 19 C 1.39511 * 118.22138 * 179.97438 * 18 17 15 20 20 O 1.35515 * 120.49128 * 179.97438 * 19 18 17 21 21 N 1.32713 * 119.01512 * 0.27495 * 19 18 17 22 22 C 1.31846 * 120.93710 * 359.44259 * 21 19 18 23 23 C 1.50700 * 119.01592 * 180.27204 * 22 21 19 24 24 C 1.53004 * 117.49669 * 9.03884 * 23 22 21 25 25 C 1.53006 * 117.49743 * 300.38305 * 23 22 21 26 26 N 1.31581 * 121.97418 * 0.57177 * 22 21 19 27 27 N 1.37354 * 107.27275 * 0.22957 * 13 12 11 28 28 H 0.96999 * 126.35007 * 179.75312 * 27 13 12 29 29 H 0.97002 * 120.00123 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47316 * 60.00593 * 9 7 2 31 31 H 1.08997 * 109.47481 * 299.99898 * 9 7 2 32 32 H 1.08000 * 125.53646 * 0.02562 * 11 10 9 33 33 H 1.07998 * 125.88443 * 180.02562 * 12 11 10 34 34 H 1.08000 * 120.89354 * 359.95551 * 18 17 15 35 35 H 0.96701 * 113.99666 * 90.00622 * 20 19 18 36 36 H 1.08998 * 115.55500 * 154.71372 * 23 22 21 37 37 H 1.09004 * 117.50177 * 0.02562 * 24 23 22 38 38 H 1.08997 * 117.49945 * 145.02349 * 24 23 22 39 39 H 1.08993 * 117.49715 * 214.98209 * 25 23 22 40 40 H 1.09005 * 117.49380 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5468 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9999 -2.5753 0.0001 11 6 4.1744 -3.3608 -1.1005 12 6 4.6375 -4.5681 -0.7081 13 6 4.7641 -4.5569 0.6964 14 7 5.1897 -5.5623 1.4588 15 6 5.5467 -6.7204 0.8983 16 8 5.4827 -6.8574 -0.3104 17 6 6.0211 -7.8424 1.7491 18 6 6.3964 -9.0540 1.1761 19 6 6.8349 -10.0749 2.0197 20 8 7.2110 -11.2734 1.5110 21 7 6.8727 -9.8570 3.3283 22 6 6.5137 -8.6928 3.8322 23 6 6.5794 -8.4905 5.3242 24 6 7.2606 -9.5796 6.1554 25 6 5.7388 -9.4210 6.2009 26 7 6.0942 -7.7041 3.0721 27 7 4.3615 -3.3182 1.1323 28 1 4.3345 -3.0134 2.0527 29 1 -0.4850 0.8401 -0.0004 30 1 3.8753 -0.6797 0.8895 31 1 3.8746 -0.6809 -0.8905 32 1 3.9750 -3.0659 -2.1202 33 1 4.8704 -5.3985 -1.3581 34 1 6.3491 -9.2001 0.1071 35 1 8.1500 -11.3282 1.2866 36 1 6.6968 -7.4583 5.6540 37 1 7.6616 -10.4422 5.6231 38 1 7.8258 -9.2639 7.0322 39 1 5.3035 -9.0010 7.1076 40 1 5.1380 -10.1792 5.6985 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000553465873.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:34 Heat of formation + Delta-G solvation = 118.157700 kcal Electronic energy + Delta-G solvation = -26110.086503 eV Core-core repulsion = 22122.983658 eV Total energy + Delta-G solvation = -3987.102845 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.33945 -41.04573 -38.64437 -38.06461 -36.75441 -34.45197 -33.22706 -33.03933 -31.40795 -31.21816 -31.10926 -27.53883 -25.66342 -24.90754 -23.12299 -22.50600 -22.28905 -21.52687 -21.15677 -19.70923 -18.81889 -17.90166 -17.51096 -16.87177 -16.43361 -15.84228 -15.59522 -15.40420 -15.24376 -15.13632 -14.69161 -14.51446 -14.45666 -14.11329 -13.43879 -13.34734 -13.13044 -12.77455 -12.48273 -12.44312 -12.26713 -11.67372 -11.64095 -11.10938 -10.95689 -10.79810 -10.77236 -10.57355 -10.48211 -10.15031 -9.96524 -9.79623 -9.34819 -9.24978 -9.21939 -9.11385 -8.60051 -7.14882 -6.58339 -4.68098 0.49547 0.77446 1.52845 1.79861 2.74800 2.91351 2.95395 3.02779 3.09290 3.34888 3.60988 3.83818 3.91236 3.94759 4.23557 4.41621 4.67543 4.69777 4.75960 4.83654 4.87164 5.02919 5.04714 5.17950 5.46548 5.49440 5.55387 5.67150 5.72163 5.92227 5.95048 5.98484 6.05877 6.12496 6.29186 6.49584 6.83646 6.87591 7.15109 7.16639 7.34881 7.64886 7.89196 7.96248 8.06262 8.44367 8.93095 9.06303 10.53067 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.019290 B = 0.002304 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.182871 B =12148.675799 C =13142.034626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.085 3.915 3 Si 0.875 3.125 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.568 4.568 8 H 0.086 0.914 9 C 0.226 3.774 10 N -0.333 5.333 11 C 0.169 3.831 12 C -0.328 4.328 13 C 0.468 3.532 14 N -0.661 5.661 15 C 0.542 3.458 16 O -0.569 6.569 17 C 0.192 3.808 18 C -0.205 4.205 19 C 0.355 3.645 20 O -0.474 6.474 21 N -0.534 5.534 22 C 0.360 3.640 23 C -0.098 4.098 24 C -0.155 4.155 25 C -0.155 4.155 26 N -0.463 5.463 27 N -0.458 5.458 28 H 0.449 0.551 29 H 0.274 0.726 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.193 0.807 33 H 0.187 0.813 34 H 0.162 0.838 35 H 0.406 0.594 36 H 0.134 0.866 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.562 -11.842 4.868 19.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.122 4.122 3 Si 0.700 3.300 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.606 4.606 8 H 0.104 0.896 9 C 0.108 3.892 10 N -0.118 5.118 11 C 0.023 3.977 12 C -0.360 4.360 13 C 0.219 3.781 14 N -0.424 5.424 15 C 0.325 3.675 16 O -0.449 6.449 17 C 0.044 3.956 18 C -0.229 4.229 19 C 0.167 3.833 20 O -0.281 6.281 21 N -0.260 5.260 22 C 0.093 3.907 23 C -0.118 4.118 24 C -0.193 4.193 25 C -0.194 4.194 26 N -0.179 5.179 27 N -0.179 5.179 28 H 0.297 0.703 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.210 0.790 33 H 0.203 0.797 34 H 0.179 0.821 35 H 0.265 0.735 36 H 0.152 0.848 37 H 0.126 0.874 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 13.744 -11.406 6.132 18.884 hybrid contribution 0.505 0.862 -1.238 1.591 sum 14.249 -10.544 4.895 18.389 Atomic orbital electron populations 1.69852 1.06267 1.27999 1.46740 1.24823 0.94874 0.99000 0.93534 0.86891 0.80209 0.83580 0.79321 1.19293 1.20202 1.18926 1.21217 0.87636 0.96015 1.55718 0.89577 1.20430 0.97040 0.71734 0.99951 1.47629 1.55576 1.11866 0.96679 1.22946 0.92251 0.90324 0.92181 1.22524 1.17993 1.00334 0.95118 1.19149 0.85214 0.83908 0.89815 1.68852 1.36389 1.00992 1.36186 1.18278 0.78856 0.85500 0.84845 1.90650 1.54200 1.84143 1.15879 1.21477 0.91525 0.92932 0.89620 1.22983 1.03358 0.92866 1.03734 1.19227 0.92484 0.84627 0.87007 1.84735 1.31804 1.29661 1.81906 1.67476 1.19378 1.24549 1.14598 1.21981 0.89848 0.83033 0.95838 1.20646 1.08268 0.98330 0.84530 1.23030 0.95096 1.00194 1.00963 1.22997 0.94338 1.01282 1.00748 1.68311 1.12440 1.32133 1.05060 1.44557 1.60456 1.09376 1.03556 0.70331 0.91598 0.93102 0.91887 0.78997 0.79660 0.82052 0.73520 0.84823 0.87353 0.88190 0.87808 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.44 13.96 55.43 0.77 -22.67 16 2 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.87 17.38 27.47 -169.99 -4.67 12.71 16 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.26 -4.86 6.54 56.52 0.37 -4.49 16 7 C -0.57 -13.32 9.94 -34.44 -0.34 -13.67 16 8 H 0.09 2.33 8.06 -52.49 -0.42 1.91 16 9 C 0.23 4.12 5.26 -5.19 -0.03 4.09 16 10 N -0.33 -5.65 3.63 -62.23 -0.23 -5.88 16 11 C 0.17 2.58 11.46 -16.65 -0.19 2.39 16 12 C -0.33 -5.62 9.52 -39.63 -0.38 -6.00 16 13 C 0.47 8.64 8.07 -155.23 -1.25 7.39 16 14 N -0.66 -12.98 10.32 -12.09 -0.12 -13.10 16 15 C 0.54 10.52 7.73 -12.55 -0.10 10.43 16 16 O -0.57 -11.39 13.34 5.09 0.07 -11.32 16 17 C 0.19 3.31 6.79 -82.65 -0.56 2.75 16 18 C -0.20 -2.97 9.67 -38.76 -0.37 -3.34 16 19 C 0.36 4.67 7.84 -16.70 -0.13 4.54 16 20 O -0.47 -4.83 13.58 -18.24 -0.25 -5.08 16 21 N -0.53 -7.42 9.35 -10.80 -0.10 -7.52 16 22 C 0.36 5.24 7.31 -157.33 -1.15 4.09 16 23 C -0.10 -1.11 6.23 -91.77 -0.57 -1.68 16 24 C -0.16 -1.38 10.01 -26.69 -0.27 -1.65 16 25 C -0.16 -1.48 10.24 -26.69 -0.27 -1.75 16 26 N -0.46 -7.82 10.08 -7.35 -0.07 -7.89 16 27 N -0.46 -7.66 7.38 31.32 0.23 -7.43 16 28 H 0.45 6.59 8.96 -182.55 -1.64 4.96 16 29 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.05 0.89 7.20 -51.93 -0.37 0.52 16 31 H 0.06 1.04 7.57 -51.93 -0.39 0.64 16 32 H 0.19 2.20 8.06 -52.49 -0.42 1.77 16 33 H 0.19 3.28 5.77 -52.49 -0.30 2.97 16 34 H 0.16 2.14 7.73 -52.49 -0.41 1.74 16 35 H 0.41 1.88 9.06 45.56 0.41 2.29 16 36 H 0.13 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.11 1.05 7.54 -51.93 -0.39 0.66 16 38 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 356.22 15.07 5.37 5.37 Total: -1.00 -32.16 356.22 -9.51 -41.67 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -4.79 Total: 11.60 kcal Atomic # 6 Polarization: 15.26 SS G_CDS: -5.71 Total: 9.55 kcal Atomic # 7 Polarization: -64.97 SS G_CDS: 0.48 Total: -64.49 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.18 Total: -16.40 kcal Atomic # 14 Polarization: 17.38 SS G_CDS: -4.67 Total: 12.71 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.16 -9.51 -41.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000553465873.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.824 kcal (2) G-P(sol) polarization free energy of solvation -32.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds