Wall clock time and date at job start Tue Mar 31 2020 05:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86801 * 120.00295 * 2 1 4 4 H 1.48500 * 109.46927 * 269.99855 * 3 2 1 5 5 H 1.48501 * 109.46720 * 29.99524 * 3 2 1 6 6 H 1.48498 * 109.47123 * 149.99782 * 3 2 1 7 7 C 1.38945 * 119.99508 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99880 * 179.97438 * 7 2 1 9 9 N 1.37102 * 120.00287 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00015 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00155 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00115 * 179.97438 * 10 9 7 13 13 N 1.46493 * 109.47082 * 179.97438 * 12 10 9 14 14 C 1.34784 * 119.99864 * 180.02562 * 13 12 10 15 15 O 1.21597 * 119.99613 * 359.72388 * 14 13 12 16 16 N 1.34777 * 119.99964 * 179.73002 * 14 13 12 17 17 C 1.40815 * 119.99483 * 180.02562 * 16 14 13 18 18 C 1.40293 * 126.07623 * 0.02562 * 17 16 14 19 19 N 1.30872 * 108.38366 * 179.97438 * 18 17 16 20 20 N 1.40076 * 108.37454 * 359.97438 * 19 18 17 21 21 C 1.40158 * 126.07130 * 180.02562 * 20 19 18 22 22 C 1.38839 * 120.06371 * 179.69870 * 21 20 19 23 23 C 1.38128 * 119.93091 * 179.76717 * 22 21 20 24 24 C 1.38280 * 120.06462 * 0.51220 * 23 22 21 25 25 C 1.38283 * 120.13275 * 359.74129 * 24 23 22 26 26 C 1.38110 * 120.07217 * 0.02562 * 25 24 23 27 27 C 1.35729 * 126.06695 * 179.70935 * 17 16 14 28 28 H 0.97007 * 119.99673 * 0.02562 * 1 2 3 29 29 H 0.96995 * 119.99871 * 359.97438 * 9 7 2 30 30 H 1.09007 * 109.46606 * 60.00104 * 12 10 9 31 31 H 1.09006 * 109.47204 * 300.00561 * 12 10 9 32 32 H 0.97000 * 120.00740 * 359.72841 * 13 12 10 33 33 H 0.96996 * 119.99887 * 359.97438 * 16 14 13 34 34 H 1.08005 * 125.80739 * 359.97438 * 18 17 16 35 35 H 1.08000 * 120.04059 * 359.97438 * 22 21 20 36 36 H 1.08000 * 119.96373 * 180.27637 * 23 22 21 37 37 H 1.07990 * 119.93273 * 179.76862 * 24 23 22 38 38 H 1.08004 * 119.96338 * 180.02562 * 25 24 23 39 39 H 1.08001 * 120.03650 * 180.02562 * 26 25 24 40 40 H 1.08006 * 126.23306 * 0.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0016 11 8 3.2100 -3.5580 0.0021 12 6 1.2435 -4.8630 0.0022 13 7 2.1955 -5.9765 0.0027 14 6 1.7462 -7.2472 0.0027 15 8 0.5507 -7.4693 0.0074 16 7 2.6220 -8.2716 -0.0023 17 6 2.1524 -9.5992 -0.0028 18 6 0.8079 -10.0000 0.0010 19 7 0.7672 -11.3080 -0.0014 20 7 2.0821 -11.7908 -0.0075 21 6 2.4663 -13.1387 -0.0122 22 6 3.8125 -13.4781 -0.0244 23 6 4.1881 -14.8074 -0.0242 24 6 3.2249 -15.7994 -0.0225 25 6 1.8833 -15.4644 -0.0156 26 6 1.5015 -14.1371 -0.0110 27 6 2.9203 -10.7184 -0.0132 28 1 -0.4850 0.8401 -0.0004 29 1 0.3533 -2.3906 0.0005 30 1 0.6172 -4.9212 -0.8881 31 1 0.6164 -4.9201 0.8919 32 1 3.1492 -5.7994 -0.0014 33 1 3.5756 -8.0944 -0.0064 34 1 -0.0478 -9.3411 0.0053 35 1 4.5653 -12.7038 -0.0307 36 1 5.2352 -15.0720 -0.0292 37 1 3.5209 -16.8380 -0.0261 38 1 1.1332 -16.2415 -0.0139 39 1 0.4535 -13.8761 -0.0052 40 1 3.9998 -10.7519 -0.0221 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554465686.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:12 Heat of formation + Delta-G solvation = 53.210962 kcal Electronic energy + Delta-G solvation = -25457.394662 eV Core-core repulsion = 21467.475515 eV Total energy + Delta-G solvation = -3989.919147 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.82986 -40.03576 -39.19361 -38.23577 -35.04091 -34.50253 -33.81181 -33.27100 -31.54406 -31.40414 -30.01069 -28.87962 -27.26019 -24.57967 -23.69321 -23.34626 -21.80377 -21.04611 -20.37335 -19.61504 -18.68951 -18.16906 -17.97810 -16.86030 -16.22026 -15.87263 -15.77312 -15.42956 -15.27915 -15.01610 -14.68781 -14.46586 -14.19426 -14.12544 -13.99404 -13.92988 -13.49209 -13.13682 -13.01602 -12.24227 -12.13179 -12.05567 -11.66216 -11.65274 -11.21701 -11.12059 -10.99588 -10.47863 -10.34478 -10.31536 -10.10923 -9.66215 -9.45324 -9.03092 -8.85750 -8.67059 -8.12908 -7.71965 -6.53846 -3.96063 0.48963 0.90126 1.85234 1.98931 2.50124 2.67459 3.09994 3.20928 3.26057 3.35985 3.41689 3.71475 4.04921 4.19387 4.26258 4.41299 4.53937 4.63231 4.74125 4.83982 4.93086 5.03475 5.14801 5.16749 5.30824 5.35828 5.56680 5.83238 5.90026 5.92197 5.94013 6.02995 6.05360 6.08075 6.32768 6.61076 6.69825 6.86085 6.92216 7.41790 7.43724 7.89377 8.02659 8.41744 8.58240 9.01997 9.36315 9.83857 10.62871 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.051694 B = 0.001646 C = 0.001597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.517653 B =17003.530822 C =17529.878918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.027 3.973 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.106 0.894 9 N -0.547 5.547 10 C 0.427 3.573 11 O -0.599 6.599 12 C 0.128 3.872 13 N -0.717 5.717 14 C 0.709 3.291 15 O -0.584 6.584 16 N -0.661 5.661 17 C 0.051 3.949 18 C 0.069 3.931 19 N -0.280 5.280 20 N -0.327 5.327 21 C 0.177 3.823 22 C -0.147 4.147 23 C -0.092 4.092 24 C -0.138 4.138 25 C -0.094 4.094 26 C -0.126 4.126 27 C 0.000 4.000 28 H 0.275 0.725 29 H 0.396 0.604 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.409 0.591 33 H 0.409 0.591 34 H 0.217 0.783 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.131 0.869 39 H 0.138 0.862 40 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.951 -27.534 -0.062 28.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.436 4.436 8 H 0.123 0.877 9 N -0.182 5.182 10 C 0.213 3.787 11 O -0.485 6.485 12 C 0.000 4.000 13 N -0.374 5.374 14 C 0.409 3.591 15 O -0.462 6.462 16 N -0.308 5.308 17 C -0.054 4.054 18 C -0.120 4.120 19 N -0.098 5.098 20 N -0.105 5.105 21 C 0.083 3.917 22 C -0.168 4.168 23 C -0.110 4.110 24 C -0.156 4.156 25 C -0.112 4.112 26 C -0.146 4.146 27 C -0.143 4.143 28 H 0.084 0.916 29 H 0.230 0.770 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.247 0.753 33 H 0.244 0.756 34 H 0.233 0.767 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.156 0.844 40 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 4.781 -28.460 -0.046 28.858 hybrid contribution 1.316 1.908 -0.020 2.318 sum 6.097 -26.552 -0.065 27.243 Atomic orbital electron populations 1.69617 1.06010 1.28569 1.49130 1.25328 0.95667 0.99943 0.96716 0.85808 0.79219 0.80475 0.78492 1.20261 1.20783 1.19329 1.19731 0.93470 0.81984 1.48389 0.87659 1.41780 1.09517 1.04435 1.62466 1.19724 0.88289 0.84981 0.85737 1.90495 1.13725 1.86827 1.57502 1.20845 0.91089 0.84635 1.03454 1.44712 1.11575 1.02984 1.78091 1.15684 0.84839 0.80416 0.78141 1.90785 1.13946 1.83582 1.57935 1.41851 1.09546 1.01918 1.77529 1.17477 0.92990 0.83640 1.11337 1.24839 0.97866 0.91273 0.98033 1.77476 0.97090 1.11542 1.23732 1.45441 1.04531 1.03288 1.57275 1.17515 0.93541 0.79789 1.00809 1.20828 0.93275 0.97675 1.04993 1.20971 0.99963 0.91600 0.98499 1.21212 0.92987 0.99707 1.01727 1.21076 0.96414 0.95421 0.98323 1.20928 0.99843 0.91662 1.02155 1.21749 0.97183 0.85439 1.09961 0.91552 0.76977 0.89714 0.89674 0.75330 0.75570 0.76718 0.85235 0.85109 0.85555 0.85154 0.84412 0.80310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.50 13.05 55.50 0.72 -22.78 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.24 29.55 -169.99 -5.02 15.22 16 4 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.31 -8.17 9.68 -14.93 -0.14 -8.32 16 8 H 0.11 2.92 7.16 -52.48 -0.38 2.55 16 9 N -0.55 -13.23 5.29 -10.96 -0.06 -13.29 16 10 C 0.43 9.45 7.85 -10.99 -0.09 9.36 16 11 O -0.60 -14.79 15.24 5.54 0.08 -14.71 16 12 C 0.13 2.24 6.15 -5.20 -0.03 2.21 16 13 N -0.72 -11.15 5.53 -66.41 -0.37 -11.52 16 14 C 0.71 10.72 8.54 -86.91 -0.74 9.98 16 15 O -0.58 -10.31 13.50 5.28 0.07 -10.24 16 16 N -0.66 -7.74 5.48 -14.38 -0.08 -7.82 16 17 C 0.05 0.63 6.90 -83.85 -0.58 0.05 16 18 C 0.07 0.97 10.84 -17.19 -0.19 0.78 16 19 N -0.28 -3.86 11.86 30.72 0.36 -3.49 16 20 N -0.33 -3.84 3.82 -10.40 -0.04 -3.88 16 21 C 0.18 1.77 6.69 -83.60 -0.56 1.21 16 22 C -0.15 -1.10 9.46 -39.40 -0.37 -1.48 16 23 C -0.09 -0.56 10.04 -39.61 -0.40 -0.95 16 24 C -0.14 -0.82 10.04 -39.55 -0.40 -1.22 16 25 C -0.09 -0.65 10.04 -39.61 -0.40 -1.04 16 26 C -0.13 -1.17 9.66 -39.40 -0.38 -1.55 16 27 C 0.00 0.00 10.86 -16.55 -0.18 -0.18 16 28 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 29 H 0.40 9.21 7.90 -40.82 -0.32 8.89 16 30 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.41 6.10 7.45 -40.82 -0.30 5.80 16 33 H 0.41 3.46 8.84 -40.82 -0.36 3.10 16 34 H 0.22 3.20 5.91 -52.48 -0.31 2.89 16 35 H 0.13 0.72 6.75 -52.49 -0.35 0.37 16 36 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 37 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 38 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 39 H 0.14 1.34 7.70 -52.49 -0.40 0.94 16 40 H 0.18 1.11 7.07 -52.48 -0.37 0.74 16 LS Contribution 354.44 15.07 5.34 5.34 Total: -1.00 -32.65 354.44 -7.58 -40.23 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: -4.05 Total: 17.50 kcal Atomic # 6 Polarization: 13.99 SS G_CDS: -4.55 Total: 9.44 kcal Atomic # 7 Polarization: -63.32 SS G_CDS: 0.54 Total: -62.78 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: 0.16 Total: -24.95 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.65 -7.58 -40.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554465686.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.441 kcal (2) G-P(sol) polarization free energy of solvation -32.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds