Wall clock time and date at job start Tue Mar 31 2020 06:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46500 * 119.99682 * 2 1 4 4 C 1.38412 * 120.00279 * 180.02562 * 2 1 3 5 5 N 1.32566 * 119.10419 * 180.02562 * 4 2 1 6 6 C 1.32578 * 120.87512 * 179.97438 * 5 4 2 7 7 O 1.35500 * 120.44407 * 180.27069 * 6 5 4 8 8 C 1.39654 * 119.10841 * 359.97438 * 6 5 4 9 9 C 1.39148 * 118.36702 * 359.97438 * 8 6 5 10 10 C 1.48414 * 120.47312 * 179.97438 * 9 8 6 11 11 O 1.21480 * 120.00351 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99920 * 180.02562 * 10 9 8 13 13 C 1.39360 * 120.00367 * 175.13513 * 12 10 9 14 14 C 1.38627 * 119.58513 * 184.93182 * 13 12 10 15 15 C 1.40809 * 118.79180 * 179.71691 * 14 13 12 16 16 C 1.41545 * 120.99379 * 180.30002 * 15 14 13 17 17 H 1.07995 * 119.99955 * 203.90497 * 16 15 14 18 18 C 1.40030 * 119.99901 * 23.90881 * 16 15 14 19 19 N 1.30745 * 120.00247 * 16.79158 * 18 16 15 20 20 Si 1.86799 * 119.99907 * 196.79262 * 18 16 15 21 21 H 1.48508 * 109.47002 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47383 * 119.99795 * 20 18 16 23 23 H 1.48495 * 109.47256 * 240.00265 * 20 18 16 24 24 C 1.41175 * 118.00914 * 0.53888 * 15 14 13 25 25 C 1.37590 * 119.01800 * 359.74024 * 24 15 14 26 26 N 1.32073 * 121.11850 * 359.97438 * 25 24 15 27 27 N 1.32250 * 119.09940 * 359.97438 * 4 2 1 28 28 H 1.08998 * 109.46705 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46826 * 299.99620 * 1 2 3 30 30 H 1.08992 * 109.47143 * 59.99794 * 1 2 3 31 31 H 1.09000 * 109.47682 * 270.00310 * 3 2 1 32 32 H 1.08999 * 109.47358 * 30.00268 * 3 2 1 33 33 H 1.09000 * 109.46958 * 149.99872 * 3 2 1 34 34 H 0.96693 * 114.00017 * 269.71757 * 7 6 5 35 35 H 1.08003 * 120.82007 * 180.02562 * 8 6 5 36 36 H 0.97007 * 119.99744 * 355.13478 * 12 10 9 37 37 H 1.07993 * 120.60293 * 359.97438 * 14 13 12 38 38 H 0.96999 * 119.99962 * 180.02562 * 19 18 16 39 39 H 1.07996 * 120.48792 * 179.75745 * 24 15 14 40 40 H 1.08008 * 119.44205 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1572 -1.1986 -0.0005 5 7 3.4827 -1.1779 0.0000 6 6 4.1808 -2.3050 0.0000 7 8 5.5354 -2.2735 0.0061 8 6 3.5012 -3.5250 0.0000 9 6 2.1098 -3.5068 0.0005 10 6 1.3405 -4.7759 0.0000 11 8 1.9252 -5.8407 -0.0004 12 7 -0.0070 -4.7471 0.0000 13 6 -0.7294 -5.9344 -0.1029 14 6 -2.1111 -5.8881 -0.2054 15 6 -2.8239 -7.0976 -0.3146 16 6 -4.2348 -7.1044 -0.4282 17 1 -4.7962 -7.9775 -0.1302 18 6 -4.9024 -5.9792 -0.9271 19 7 -4.2400 -5.0646 -1.5858 20 14 -6.7397 -5.7848 -0.6513 21 1 -7.2508 -6.9487 0.1166 22 1 -6.9966 -4.5367 0.1113 23 1 -7.4325 -5.7150 -1.9628 24 6 -2.0896 -8.3033 -0.3022 25 6 -0.7194 -8.2492 -0.1904 26 7 -0.0874 -7.0933 -0.0960 27 7 1.4780 -2.3335 -0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 2.3791 1.5835 -1.0276 32 1 1.6084 2.0284 0.5139 33 1 3.1499 1.1385 0.5139 34 1 5.9326 -2.2664 -0.8755 35 1 4.0422 -4.4597 0.0005 36 1 -0.4740 -3.8999 0.0716 37 1 -2.6310 -4.9416 -0.2059 38 1 -4.7024 -4.2849 -1.9311 39 1 -2.5961 -9.2540 -0.3795 40 1 -0.1509 -9.1675 -0.1798 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580629993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:30 Heat of formation + Delta-G solvation = 41.762832 kcal Electronic energy + Delta-G solvation = -26976.436266 eV Core-core repulsion = 22986.020691 eV Total energy + Delta-G solvation = -3990.415575 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.34627 -39.53929 -38.16243 -37.85222 -36.31922 -34.44795 -33.88261 -33.25822 -30.98131 -30.58216 -28.84174 -28.30358 -26.06971 -25.95058 -25.14792 -22.73850 -22.01702 -21.42973 -20.10244 -19.00469 -18.37239 -17.72346 -17.03314 -16.53682 -16.05294 -15.61175 -15.43708 -15.23793 -15.00267 -14.78156 -14.68428 -14.25164 -14.09906 -13.73587 -13.50079 -12.88158 -12.72162 -12.64808 -12.55252 -12.35786 -12.22527 -12.19017 -11.49789 -11.23867 -10.95323 -10.92914 -10.66630 -10.37834 -10.28436 -10.22060 -9.92138 -9.80912 -9.39546 -9.30062 -8.10751 -8.04832 -7.81218 -7.08665 -6.85464 -4.64551 0.53865 0.91521 2.33930 2.52508 2.74421 3.00064 3.05310 3.10441 3.20583 3.28855 3.41136 3.82312 3.90088 4.19728 4.51445 4.63485 4.88928 4.93656 5.09336 5.18159 5.26033 5.38906 5.43886 5.57413 5.64109 5.74435 5.89820 5.97125 6.51263 6.52868 6.57835 6.64246 6.76590 6.90595 7.06285 7.08205 7.17396 7.32475 7.40007 7.69562 7.86503 8.02076 8.14804 8.34713 8.62269 8.70206 8.75879 9.62461 10.02629 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.013407 B = 0.003324 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.972928 B = 8421.301672 C =10409.138020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.590 5.590 3 C 0.103 3.897 4 C 0.586 3.414 5 N -0.580 5.580 6 C 0.403 3.597 7 O -0.473 6.473 8 C -0.247 4.247 9 C 0.201 3.799 10 C 0.554 3.446 11 O -0.460 6.460 12 N -0.632 5.632 13 C 0.333 3.667 14 C -0.237 4.237 15 C 0.143 3.857 16 C -0.454 4.454 17 H 0.083 0.917 18 C 0.078 3.922 19 N -0.785 5.785 20 Si 0.911 3.089 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.274 1.274 24 C -0.283 4.283 25 C 0.120 3.880 26 N -0.557 5.557 27 N -0.552 5.552 28 H 0.097 0.903 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.409 0.591 35 H 0.163 0.837 36 H 0.418 0.582 37 H 0.129 0.871 38 H 0.282 0.718 39 H 0.103 0.897 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.077 12.873 0.725 15.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.308 5.308 3 C -0.041 4.041 4 C 0.229 3.771 5 N -0.314 5.314 6 C 0.213 3.787 7 O -0.281 6.281 8 C -0.275 4.275 9 C 0.052 3.948 10 C 0.336 3.664 11 O -0.328 6.328 12 N -0.278 5.278 13 C 0.109 3.891 14 C -0.263 4.263 15 C 0.135 3.865 16 C -0.485 4.485 17 H 0.101 0.899 18 C -0.141 4.141 19 N -0.410 5.410 20 Si 0.735 3.265 21 H -0.183 1.183 22 H -0.196 1.196 23 H -0.199 1.199 24 C -0.307 4.307 25 C -0.034 4.034 26 N -0.276 5.276 27 N -0.279 5.279 28 H 0.115 0.885 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.269 0.731 35 H 0.180 0.820 36 H 0.254 0.746 37 H 0.147 0.853 38 H 0.093 0.907 39 H 0.121 0.879 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.842 13.325 1.252 16.612 hybrid contribution -1.367 0.068 -0.565 1.480 sum 8.475 13.392 0.687 15.863 Atomic orbital electron populations 1.21795 0.76878 1.05129 1.01161 1.45914 1.06059 1.01615 1.77189 1.21621 0.97554 0.83147 1.01731 1.18694 0.83606 0.86301 0.88456 1.67147 1.07634 1.32904 1.23750 1.18919 0.84406 0.86663 0.88740 1.84704 1.13369 1.95597 1.34388 1.22564 0.94755 1.00353 1.09843 1.21498 0.91247 0.91567 0.90490 1.17821 0.82710 0.86649 0.79248 1.90888 1.68740 1.28689 1.44457 1.43179 1.05395 1.09205 1.69974 1.18147 0.88074 0.85062 0.97832 1.21542 0.90302 1.00658 1.13749 1.17568 0.93384 0.89960 0.85620 1.19615 0.91278 1.00280 1.37298 0.89855 1.25967 1.01264 0.94715 0.92177 1.69786 1.38635 1.08713 1.23890 0.86217 0.81694 0.79519 0.79087 1.18258 1.19569 1.19880 1.21904 0.94583 0.98208 1.15967 1.21754 0.91636 0.93946 0.96055 1.67193 1.39575 0.96608 1.24254 1.67831 1.40490 0.97214 1.22370 0.88475 0.92192 0.92152 0.92992 0.91187 0.90184 0.73132 0.81969 0.74551 0.85328 0.90692 0.87878 0.85738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.89 10.71 59.85 0.64 1.53 16 2 N -0.59 -6.67 3.37 -191.94 -0.65 -7.32 16 3 C 0.10 0.86 10.48 59.85 0.63 1.48 16 4 C 0.59 8.21 8.18 -323.02 -2.64 5.57 16 5 N -0.58 -7.90 9.11 -13.99 -0.13 -8.03 16 6 C 0.40 5.19 7.83 -16.70 -0.13 5.05 16 7 O -0.47 -4.72 13.57 -18.19 -0.25 -4.96 16 8 C -0.25 -3.53 9.67 -38.72 -0.37 -3.91 16 9 C 0.20 3.29 6.78 -82.72 -0.56 2.73 16 10 C 0.55 11.00 7.79 -12.07 -0.09 10.91 16 11 O -0.46 -10.46 14.66 5.38 0.08 -10.38 16 12 N -0.63 -12.94 5.38 -12.19 -0.07 -13.01 16 13 C 0.33 8.07 7.41 -154.78 -1.15 6.92 16 14 C -0.24 -5.95 8.62 -38.47 -0.33 -6.28 16 15 C 0.14 3.70 5.60 -106.55 -0.60 3.10 16 16 C -0.45 -11.44 9.12 -37.65 -0.34 -11.78 16 17 H 0.08 2.02 7.90 -52.49 -0.41 1.60 16 18 C 0.08 1.85 5.20 -17.34 -0.09 1.76 16 19 N -0.79 -18.94 10.93 55.55 0.61 -18.33 16 20 Si 0.91 17.52 29.59 -169.99 -5.03 12.49 16 21 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 22 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 23 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 24 C -0.28 -6.82 9.90 -38.70 -0.38 -7.21 16 25 C 0.12 2.84 11.15 -17.68 -0.20 2.65 16 26 N -0.56 -14.06 7.85 -12.54 -0.10 -14.15 16 27 N -0.55 -8.42 8.10 -10.56 -0.09 -8.51 16 28 H 0.10 1.09 6.76 -51.93 -0.35 0.74 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 33 H 0.08 0.74 7.33 -51.93 -0.38 0.36 16 34 H 0.41 1.85 9.06 45.56 0.41 2.26 16 35 H 0.16 2.21 7.72 -52.48 -0.41 1.81 16 36 H 0.42 7.54 8.08 -40.82 -0.33 7.21 16 37 H 0.13 3.20 6.20 -52.49 -0.33 2.88 16 38 H 0.28 6.12 8.29 -40.82 -0.34 5.78 16 39 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 40 H 0.13 2.55 8.06 -52.48 -0.42 2.13 16 LS Contribution 352.27 15.07 5.31 5.31 Total: -1.00 -32.33 352.27 -9.39 -41.72 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -3.46 Total: 12.64 kcal Atomic # 6 Polarization: 18.15 SS G_CDS: -5.62 Total: 12.52 kcal Atomic # 7 Polarization: -68.93 SS G_CDS: -0.42 Total: -69.35 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.17 Total: -15.34 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.33 -9.39 -41.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580629993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.487 kcal (2) G-P(sol) polarization free energy of solvation -32.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds