Wall clock time and date at job start Tue Mar 31 2020 05:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46513 * 1 3 3 C 1.46494 * 119.99752 * 2 1 4 4 S 1.65595 * 119.99605 * 179.97438 * 2 1 3 5 5 O 1.42096 * 106.40461 * 319.76241 * 4 2 1 6 6 O 1.42106 * 106.39791 * 186.84092 * 4 2 1 7 7 N 1.65599 * 107.21732 * 73.30917 * 4 2 1 8 8 C 1.36937 * 120.00309 * 90.75903 * 7 4 2 9 9 H 1.08003 * 120.00075 * 132.81840 * 8 7 4 10 10 C 1.38817 * 119.99723 * 312.81059 * 8 7 4 11 11 N 1.31617 * 119.99665 * 56.62417 * 10 8 7 12 12 Si 1.86794 * 120.00184 * 236.62131 * 10 8 7 13 13 H 1.48500 * 109.46928 * 90.00233 * 12 10 8 14 14 H 1.48494 * 109.47228 * 210.00117 * 12 10 8 15 15 H 1.48497 * 109.47336 * 330.00487 * 12 10 8 16 16 C 1.46507 * 119.99608 * 270.75063 * 7 4 2 17 17 C 1.50697 * 109.46984 * 244.25473 * 16 7 4 18 18 N 1.30697 * 127.01660 * 275.46886 * 17 16 7 19 19 O 1.21461 * 111.69169 * 179.68996 * 18 17 16 20 20 C 1.33172 * 111.26906 * 0.35807 * 19 18 17 21 21 C 1.35511 * 106.45827 * 359.72329 * 20 19 18 22 22 C 1.50075 * 124.86187 * 180.02562 * 21 20 19 23 23 C 1.53543 * 108.23470 * 343.85067 * 22 21 20 24 24 C 1.53103 * 109.53151 * 49.25118 * 23 22 21 25 25 C 1.50568 * 129.72971 * 180.02562 * 20 19 18 26 26 H 1.08996 * 109.47140 * 274.54389 * 1 2 3 27 27 H 1.08997 * 109.46691 * 34.54495 * 1 2 3 28 28 H 1.09003 * 109.46605 * 154.54089 * 1 2 3 29 29 H 1.08995 * 109.46928 * 246.16735 * 3 2 1 30 30 H 1.08996 * 109.47307 * 6.16688 * 3 2 1 31 31 H 1.09001 * 109.47105 * 126.16740 * 3 2 1 32 32 H 0.96998 * 119.99832 * 179.97438 * 11 10 8 33 33 H 1.09003 * 109.46713 * 124.25622 * 16 7 4 34 34 H 1.09001 * 109.47065 * 4.25816 * 16 7 4 35 35 H 1.09001 * 109.71484 * 224.16100 * 22 21 20 36 36 H 1.09004 * 109.71187 * 103.52943 * 22 21 20 37 37 H 1.09010 * 109.45805 * 289.24231 * 23 22 21 38 38 H 1.08996 * 109.46848 * 169.27788 * 23 22 21 39 39 H 1.09004 * 109.42981 * 170.05031 * 24 23 22 40 40 H 1.09008 * 109.38669 * 50.18333 * 24 23 22 41 41 H 1.08996 * 109.69543 * 282.68855 * 25 20 19 42 42 H 1.09002 * 109.69742 * 43.24477 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4342 0.0006 5 8 1.5924 -2.3015 0.8815 6 8 3.6658 -1.1048 0.1629 7 7 2.1446 -2.0865 -1.5142 8 6 3.0756 -1.8008 -2.4769 9 1 3.4979 -2.5965 -3.0727 10 6 3.4763 -0.4885 -2.6872 11 7 3.9743 0.2149 -1.6925 12 14 3.3089 0.2790 -4.3820 13 1 1.9786 0.9279 -4.5022 14 1 4.3744 1.2956 -4.5724 15 1 3.4405 -0.7761 -5.4185 16 6 1.0173 -2.9693 -1.8243 17 6 1.5325 -4.3501 -2.1390 18 7 1.9697 -4.7830 -3.2921 19 8 2.3240 -5.9431 -3.2311 20 6 2.1551 -6.4360 -2.0055 21 6 1.6411 -5.4315 -1.2552 22 6 1.2913 -5.5403 0.2002 23 6 1.2242 -7.0295 0.5681 24 6 2.4818 -7.7395 0.0600 25 6 2.4532 -7.8122 -1.4721 26 1 -0.3633 0.0814 1.0244 27 1 -0.3632 0.8465 -0.5827 28 1 -0.3632 -0.9279 -0.4418 29 1 2.7388 1.3757 -0.9400 30 1 1.4944 2.0942 0.1104 31 1 2.9044 1.2802 0.8296 32 1 4.2547 1.1317 -1.8395 33 1 0.4760 -2.5784 -2.6858 34 1 0.3474 -3.0183 -0.9659 35 1 0.3236 -5.0728 0.3817 36 1 2.0566 -5.0477 0.8001 37 1 0.3433 -7.4778 0.1082 38 1 1.1609 -7.1336 1.6512 39 1 2.5193 -8.7487 0.4702 40 1 3.3644 -7.1853 0.3796 41 1 1.6760 -8.5063 -1.7917 42 1 3.4213 -8.1483 -1.8434 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585708006.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:01 Heat of formation + Delta-G solvation = 22.616151 kcal Electronic energy + Delta-G solvation = -28422.761765 eV Core-core repulsion = 24534.667128 eV Total energy + Delta-G solvation = -3888.094637 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -44.34144 -37.41671 -35.89956 -35.78396 -35.14714 -34.11703 -33.28996 -31.70583 -30.52467 -29.85426 -27.30515 -26.74067 -24.22390 -23.70167 -23.65020 -22.40919 -20.52515 -19.02968 -18.65464 -17.40230 -17.09360 -16.69612 -16.03838 -15.73048 -15.15380 -14.95849 -14.53746 -13.99606 -13.78952 -13.74578 -13.72516 -13.49067 -12.90076 -12.83058 -12.77046 -12.34718 -12.25382 -12.11981 -11.84737 -11.68005 -11.52910 -11.13828 -10.94960 -10.88426 -10.79470 -10.62327 -10.49652 -10.42001 -10.34030 -10.27511 -10.07601 -9.89813 -9.30063 -8.53295 -8.32902 -8.26893 -7.75193 -6.63597 -3.76172 1.96192 2.08996 2.89368 3.19764 3.35577 3.43181 3.51759 4.14824 4.37721 4.52068 4.74144 4.84319 4.91147 4.98102 5.05551 5.30067 5.34494 5.45917 5.53755 5.59351 5.67537 5.72398 5.81451 5.83461 5.91871 6.06735 6.08764 6.12374 6.16187 6.23769 6.29037 6.40193 6.42333 6.47027 6.49565 6.72124 6.76780 6.93591 7.20512 7.48551 7.72704 8.45228 8.92125 9.03006 9.50529 10.28094 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.015036 B = 0.005747 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.754146 B = 4870.645385 C = 5991.069889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -1.009 6.009 3 C 0.098 3.902 4 S 2.728 3.272 5 O -1.042 7.042 6 O -0.928 6.928 7 N -0.849 5.849 8 C -0.355 4.355 9 H 0.093 0.907 10 C 0.084 3.916 11 N -0.735 5.735 12 Si 0.837 3.163 13 H -0.275 1.275 14 H -0.288 1.288 15 H -0.265 1.265 16 C 0.203 3.797 17 C 0.038 3.962 18 N -0.350 5.350 19 O 0.097 5.903 20 C -0.060 4.060 21 C -0.189 4.189 22 C -0.044 4.044 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.030 4.030 26 H 0.042 0.958 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.088 0.912 30 H 0.042 0.958 31 H 0.050 0.950 32 H 0.271 0.729 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.988 -7.904 3.405 11.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.847 5.847 3 C -0.047 4.047 4 S 2.746 3.254 5 O -1.025 7.025 6 O -0.911 6.911 7 N -0.682 5.682 8 C -0.488 4.488 9 H 0.110 0.890 10 C -0.134 4.134 11 N -0.366 5.366 12 Si 0.659 3.341 13 H -0.201 1.201 14 H -0.215 1.215 15 H -0.190 1.190 16 C 0.074 3.926 17 C -0.122 4.122 18 N -0.055 5.055 19 O 0.032 5.968 20 C -0.125 4.125 21 C -0.193 4.193 22 C -0.081 4.081 23 C -0.157 4.157 24 C -0.156 4.156 25 C -0.068 4.068 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.104 0.896 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.314 -7.505 3.198 10.316 hybrid contribution -0.375 0.742 -0.595 1.023 sum -6.689 -6.763 2.603 9.861 Atomic orbital electron populations 1.21235 0.81140 1.01664 1.00276 1.57812 1.13300 1.23078 1.90556 1.21850 0.94930 0.83670 1.04299 1.04710 0.73512 0.73007 0.74216 1.93410 1.77110 1.65409 1.66588 1.93600 1.30363 1.82633 1.84495 1.53206 1.29692 1.59275 1.25979 1.18257 1.24193 0.91423 1.14945 0.88962 1.25715 0.94173 0.96101 0.97407 1.71245 1.22183 1.09656 1.33489 0.87366 0.78458 0.79382 0.88887 1.20053 1.21478 1.18967 1.19403 0.89083 0.83422 1.00677 1.23642 1.00986 0.98796 0.88824 1.74265 1.15724 0.92329 1.23224 1.84714 1.62294 1.20313 1.29460 1.23952 1.04001 0.98695 0.85838 1.20731 1.06930 0.92925 0.98735 1.19925 1.03004 0.95948 0.89262 1.21675 0.97756 0.95313 1.01005 1.21630 0.99434 1.01150 0.93400 1.20088 1.02857 0.88504 0.95324 0.93919 0.92500 0.92366 0.89420 0.93884 0.93159 0.91635 0.90952 0.89812 0.90114 0.89757 0.91772 0.91128 0.90683 0.91095 0.89586 0.89625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.74 10.35 59.85 0.62 2.36 16 2 N -1.01 -21.13 3.64 -129.20 -0.47 -21.60 16 3 C 0.10 1.94 9.50 59.84 0.57 2.50 16 4 S 2.73 66.57 5.28 -107.50 -0.57 66.00 16 5 O -1.04 -25.15 16.36 -57.17 -0.94 -26.08 16 6 O -0.93 -26.13 13.63 -57.17 -0.78 -26.91 16 7 N -0.85 -20.62 3.06 -61.08 -0.19 -20.81 16 8 C -0.36 -9.45 8.50 -15.06 -0.13 -9.58 16 9 H 0.09 2.62 7.64 -52.48 -0.40 2.22 16 10 C 0.08 2.15 5.21 -17.43 -0.09 2.06 16 11 N -0.73 -18.99 6.91 55.49 0.38 -18.61 16 12 Si 0.84 19.21 29.69 -169.99 -5.05 14.16 16 13 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 14 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 16 C 0.20 4.27 6.05 -5.19 -0.03 4.24 16 17 C 0.04 0.79 6.36 -82.39 -0.52 0.27 16 18 N -0.35 -7.53 11.81 33.47 0.40 -7.14 16 19 O 0.10 1.83 11.20 19.22 0.22 2.05 16 20 C -0.06 -0.99 7.39 -35.35 -0.26 -1.25 16 21 C -0.19 -3.47 6.05 -105.21 -0.64 -4.11 16 22 C -0.04 -0.70 6.29 -27.90 -0.18 -0.88 16 23 C -0.12 -1.40 5.92 -26.40 -0.16 -1.56 16 24 C -0.12 -1.26 5.88 -26.47 -0.16 -1.42 16 25 C -0.03 -0.34 6.31 -27.74 -0.18 -0.51 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.83 8.07 -51.93 -0.42 0.41 16 28 H 0.06 0.93 7.28 -51.93 -0.38 0.55 16 29 H 0.09 1.88 4.40 -51.93 -0.23 1.65 16 30 H 0.04 0.69 7.90 -51.93 -0.41 0.28 16 31 H 0.05 1.01 7.98 -51.93 -0.41 0.59 16 32 H 0.27 6.43 7.54 -40.82 -0.31 6.12 16 33 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.08 1.59 6.56 -51.93 -0.34 1.25 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 37 H 0.06 0.68 8.12 -51.92 -0.42 0.26 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.84 8.12 -51.92 -0.42 0.42 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 345.44 15.07 5.21 5.21 Total: -1.00 -32.40 345.44 -8.85 -41.25 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -5.92 Total: 0.36 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -1.15 Total: -7.87 kcal Atomic # 7 Polarization: -68.27 SS G_CDS: 0.12 Total: -68.15 kcal Atomic # 8 Polarization: -49.45 SS G_CDS: -1.50 Total: -50.95 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.05 Total: 14.16 kcal Atomic # 16 Polarization: 66.57 SS G_CDS: -0.57 Total: 66.00 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.40 -8.85 -41.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585708006.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.869 kcal (2) G-P(sol) polarization free energy of solvation -32.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds