Wall clock time and date at job start Tue Mar 31 2020 05:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34833 * 125.89503 * 2 1 4 4 C 1.36423 * 107.61158 * 180.02562 * 3 2 1 5 5 C 1.48493 * 126.21854 * 179.97438 * 4 3 2 6 6 C 1.39402 * 120.46730 * 359.75137 * 5 4 3 7 7 N 1.31803 * 120.91354 * 179.69838 * 6 5 4 8 8 C 1.31709 * 122.01055 * 0.59043 * 7 6 5 9 9 C 1.39569 * 120.82530 * 359.69961 * 8 7 6 10 10 C 1.47856 * 120.50148 * 179.97438 * 9 8 7 11 11 O 1.21555 * 120.00258 * 180.02562 * 10 9 8 12 12 N 1.34778 * 120.00397 * 0.02562 * 10 9 8 13 13 C 1.46500 * 120.00437 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.47131 * 180.02562 * 13 12 10 15 15 O 1.21294 * 119.99789 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00005 * 180.02562 * 14 13 12 17 17 C 1.37098 * 120.00194 * 179.97438 * 16 14 13 18 18 H 1.08003 * 119.99478 * 359.97438 * 17 16 14 19 19 C 1.38945 * 119.99855 * 179.97438 * 17 16 14 20 20 N 1.31418 * 119.99547 * 180.02562 * 19 17 16 21 21 Si 1.86792 * 120.00222 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47494 * 90.00158 * 21 19 17 23 23 H 1.48504 * 109.47035 * 209.99791 * 21 19 17 24 24 H 1.48499 * 109.47136 * 329.99576 * 21 19 17 25 25 C 1.39433 * 120.46245 * 180.02562 * 5 4 3 26 26 C 1.40834 * 107.55464 * 0.02562 * 4 3 2 27 27 N 1.30674 * 108.10463 * 359.97438 * 26 4 3 28 28 H 1.09005 * 109.46808 * 270.01856 * 1 2 3 29 29 H 1.08994 * 109.47407 * 30.02161 * 1 2 3 30 30 H 1.09000 * 109.47298 * 150.02861 * 1 2 3 31 31 H 1.08006 * 126.19418 * 359.97438 * 3 2 1 32 32 H 1.07996 * 119.54369 * 359.97438 * 6 5 4 33 33 H 1.08007 * 119.58389 * 179.67701 * 8 7 6 34 34 H 0.97000 * 119.99328 * 0.02562 * 12 10 9 35 35 H 1.08996 * 109.47023 * 299.99954 * 13 12 10 36 36 H 1.08996 * 109.46849 * 60.00036 * 13 12 10 37 37 H 0.97001 * 119.99521 * 0.02562 * 16 14 13 38 38 H 0.96999 * 119.99821 * 180.02562 * 20 19 17 39 39 H 1.08002 * 120.91211 * 0.02657 * 25 5 4 40 40 H 1.08000 * 125.94563 * 180.25924 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2556 1.0923 0.0000 4 6 3.5509 0.6643 -0.0006 5 6 4.7599 1.5266 -0.0013 6 6 4.6376 2.9152 -0.0067 7 7 5.7047 3.6889 -0.0015 8 6 6.9255 3.1946 -0.0025 9 6 7.1386 1.8153 -0.0030 10 6 8.5122 1.2681 -0.0048 11 8 8.6873 0.0652 -0.0057 12 7 9.5702 2.1030 -0.0054 13 6 10.9312 1.5609 -0.0065 14 6 11.9237 2.6949 -0.0063 15 8 11.5325 3.8431 -0.0058 16 7 13.2458 2.4334 -0.0078 17 6 14.1487 3.4650 -0.0082 18 1 13.8004 4.4874 -0.0077 19 6 15.5117 3.1953 -0.0092 20 7 16.3772 4.1843 -0.0090 21 14 16.1140 1.4271 -0.0107 22 1 16.2728 0.9594 -1.4111 23 1 17.4218 1.3490 0.6885 24 1 15.1263 0.5672 0.6894 25 6 6.0333 0.9585 -0.0024 26 6 3.5330 -0.7439 -0.0015 27 7 2.2859 -1.1342 -0.0010 28 1 -0.3633 0.0003 1.0277 29 1 -0.3634 0.8897 -0.5141 30 1 -0.3634 -0.8902 -0.5134 31 1 1.9234 2.1200 -0.0004 32 1 3.6550 3.3633 -0.0108 33 1 7.7722 3.8651 -0.0034 34 1 9.4305 3.0629 -0.0043 35 1 11.0793 0.9489 0.8832 36 1 11.0779 0.9493 -0.8967 37 1 13.5585 1.5151 -0.0094 38 1 17.3287 3.9960 -0.0101 39 1 6.1625 -0.1137 -0.0032 40 1 4.3992 -1.3890 0.0018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588078037.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:21 Heat of formation + Delta-G solvation = 50.631292 kcal Electronic energy + Delta-G solvation = -25633.553040 eV Core-core repulsion = 21643.522030 eV Total energy + Delta-G solvation = -3990.031010 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.74037 -40.56008 -39.19751 -38.20803 -34.71798 -34.31084 -33.82484 -32.74473 -32.38894 -31.80872 -29.71980 -27.98226 -27.13771 -25.01262 -23.99835 -23.71545 -21.58816 -21.08839 -20.19848 -19.67635 -18.83672 -18.13755 -17.12887 -16.97972 -16.52490 -15.97260 -15.70041 -15.50215 -15.20527 -15.02594 -14.83228 -14.49018 -14.38882 -13.83367 -13.71037 -13.57275 -13.29216 -13.20412 -13.15231 -13.01181 -12.51448 -12.31919 -12.18730 -12.15161 -11.28935 -11.25189 -10.65702 -10.59092 -10.31828 -10.07518 -9.94680 -9.76242 -9.71807 -9.58447 -8.99258 -8.80884 -8.32476 -8.29226 -6.42260 -3.95026 0.38028 0.79094 1.49873 1.99371 2.39080 2.92436 2.98494 3.02991 3.08611 3.13337 3.52932 3.77640 3.93423 4.02222 4.09719 4.26000 4.45825 4.48067 4.55568 4.60087 4.62663 4.67469 4.85211 4.87586 4.96175 5.12378 5.14824 5.35463 5.43149 5.62575 5.73362 5.76203 5.84435 5.92794 6.08694 6.31534 6.43254 6.43990 7.18531 7.41585 7.58349 7.66436 7.97878 8.20512 8.42988 8.79865 9.27764 9.60525 10.69774 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.035036 B = 0.001913 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.993199 B =14630.889521 C =15409.435672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.372 5.372 3 C 0.074 3.926 4 C -0.198 4.198 5 C -0.053 4.053 6 C 0.116 3.884 7 N -0.477 5.477 8 C 0.126 3.874 9 C -0.170 4.170 10 C 0.562 3.438 11 O -0.542 6.542 12 N -0.700 5.700 13 C 0.106 3.894 14 C 0.437 3.563 15 O -0.578 6.578 16 N -0.575 5.575 17 C -0.311 4.311 18 H 0.122 0.878 19 C 0.046 3.954 20 N -0.873 5.873 21 Si 0.879 3.121 22 H -0.269 1.269 23 H -0.275 1.275 24 H -0.267 1.267 25 C -0.018 4.018 26 C 0.069 3.931 27 N -0.293 5.293 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.180 0.820 32 H 0.156 0.844 33 H 0.164 0.836 34 H 0.412 0.588 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.375 0.625 38 H 0.276 0.724 39 H 0.148 0.852 40 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.786 -8.336 -0.073 30.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.152 5.152 3 C -0.073 4.073 4 C -0.210 4.210 5 C -0.056 4.056 6 C -0.042 4.042 7 N -0.184 5.184 8 C -0.032 4.032 9 C -0.175 4.175 10 C 0.348 3.652 11 O -0.421 6.421 12 N -0.354 5.354 13 C -0.022 4.022 14 C 0.222 3.778 15 O -0.463 6.463 16 N -0.212 5.212 17 C -0.439 4.439 18 H 0.140 0.860 19 C -0.159 4.159 20 N -0.512 5.512 21 Si 0.705 3.295 22 H -0.194 1.194 23 H -0.200 1.200 24 H -0.192 1.192 25 C -0.045 4.045 26 C -0.118 4.118 27 N -0.114 5.114 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.197 0.803 32 H 0.173 0.827 33 H 0.181 0.819 34 H 0.252 0.748 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.208 0.792 38 H 0.086 0.914 39 H 0.165 0.835 40 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -30.733 -8.430 -0.069 31.868 hybrid contribution 1.328 -1.042 0.028 1.688 sum -29.405 -9.472 -0.041 30.893 Atomic orbital electron populations 1.21936 0.73687 1.04829 1.03722 1.48449 1.06970 1.03737 1.56087 1.22549 0.90463 0.93623 1.00690 1.18645 0.91526 0.92925 1.17904 1.18950 0.91639 0.93579 1.01480 1.22910 0.97757 0.89172 0.94376 1.67659 0.98715 1.39828 1.12190 1.23105 0.95164 0.92197 0.92720 1.20893 0.94318 0.95285 1.07032 1.17962 0.84104 0.86256 0.76924 1.90765 1.86239 1.14524 1.50556 1.45603 1.04915 1.11322 1.73577 1.21025 0.81450 0.96032 1.03646 1.19598 0.83239 0.89672 0.85242 1.90545 1.78315 1.21682 1.55738 1.42115 1.05224 1.08613 1.65255 1.19449 0.85938 0.89819 1.48720 0.86014 1.25068 0.95602 0.98106 0.97085 1.69620 1.02452 1.31105 1.47996 0.86672 0.79620 0.84063 0.79145 1.19382 1.19969 1.19215 1.21620 0.89850 1.00992 0.92035 1.24056 0.95307 0.94126 0.98342 1.77327 1.01720 1.08000 1.24306 0.90409 0.89166 0.89022 0.80252 0.82671 0.81858 0.74842 0.89394 0.89373 0.79220 0.91359 0.83462 0.79403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.28 11.46 59.85 0.69 0.96 16 2 N -0.37 -2.64 4.00 -67.89 -0.27 -2.91 16 3 C 0.07 0.48 10.89 -16.89 -0.18 0.29 16 4 C -0.20 -1.69 6.05 -105.34 -0.64 -2.33 16 5 C -0.05 -0.51 5.89 -104.79 -0.62 -1.12 16 6 C 0.12 1.07 10.73 -17.13 -0.18 0.89 16 7 N -0.48 -5.53 10.33 -12.65 -0.13 -5.66 16 8 C 0.13 1.51 10.71 -17.11 -0.18 1.33 16 9 C -0.17 -2.14 5.89 -104.86 -0.62 -2.75 16 10 C 0.56 8.41 7.78 -12.32 -0.10 8.31 16 11 O -0.54 -9.37 16.42 5.32 0.09 -9.28 16 12 N -0.70 -10.83 5.48 -62.43 -0.34 -11.17 16 13 C 0.11 1.77 6.15 -5.19 -0.03 1.74 16 14 C 0.44 9.35 7.85 -10.98 -0.09 9.27 16 15 O -0.58 -14.24 15.24 5.54 0.08 -14.15 16 16 N -0.57 -13.10 5.09 -10.96 -0.06 -13.16 16 17 C -0.31 -8.46 10.16 -14.93 -0.15 -8.61 16 18 H 0.12 3.77 7.39 -52.48 -0.39 3.39 16 19 C 0.05 1.21 5.50 -17.47 -0.10 1.12 16 20 N -0.87 -24.71 13.96 55.50 0.77 -23.94 16 21 Si 0.88 18.78 27.74 -169.99 -4.71 14.07 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 24 H -0.27 -5.20 6.52 56.52 0.37 -4.84 16 25 C -0.02 -0.20 9.23 -38.54 -0.36 -0.56 16 26 C 0.07 0.63 11.44 -17.06 -0.20 0.43 16 27 N -0.29 -2.89 12.54 30.80 0.39 -2.50 16 28 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.09 0.03 8.14 -51.93 -0.42 -0.40 16 30 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.18 0.48 7.30 -52.48 -0.38 0.10 16 32 H 0.16 0.90 7.02 -52.49 -0.37 0.53 16 33 H 0.16 1.81 6.41 -52.48 -0.34 1.48 16 34 H 0.41 6.23 5.49 -40.82 -0.22 6.00 16 35 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 37 H 0.37 7.51 5.76 -40.82 -0.24 7.28 16 38 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.15 1.52 6.84 -52.49 -0.36 1.16 16 40 H 0.19 1.36 7.41 -52.49 -0.39 0.97 16 LS Contribution 353.90 15.07 5.33 5.33 Total: -1.00 -35.63 353.90 -5.56 -41.20 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -3.96 Total: 13.22 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: -2.75 Total: 8.96 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: 0.36 Total: -59.35 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: 0.17 Total: -23.44 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -4.71 Total: 14.07 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.63 -5.56 -41.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588078037.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.829 kcal (2) G-P(sol) polarization free energy of solvation -35.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds