Wall clock time and date at job start Tue Mar 31 2020 04:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42903 * 109.46946 * 2 1 4 4 C 1.35915 * 116.99730 * 180.02562 * 3 2 1 5 5 C 1.39133 * 120.47088 * 180.02562 * 4 3 2 6 6 C 1.38536 * 118.37663 * 180.02562 * 5 4 3 7 7 C 1.38261 * 119.21637 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.55558 * 180.02562 * 7 6 5 9 9 N 1.46504 * 109.47279 * 95.19257 * 8 7 6 10 10 C 1.36935 * 119.99738 * 78.76017 * 9 8 7 11 11 H 1.08001 * 120.00108 * 305.26735 * 10 9 8 12 12 C 1.38812 * 120.00109 * 125.26370 * 10 9 8 13 13 N 1.31618 * 120.00108 * 153.22309 * 12 10 9 14 14 Si 1.86799 * 120.00082 * 333.22298 * 12 10 9 15 15 H 1.48505 * 109.46993 * 94.18162 * 14 12 10 16 16 H 1.48497 * 109.47305 * 214.18066 * 14 12 10 17 17 H 1.48506 * 109.46856 * 334.18492 * 14 12 10 18 18 S 1.65593 * 120.00179 * 258.76464 * 9 8 7 19 19 O 1.42107 * 106.40361 * 204.43382 * 18 9 8 20 20 O 1.42102 * 106.40349 * 337.35067 * 18 9 8 21 21 N 1.65597 * 107.22315 * 90.89428 * 18 9 8 22 22 C 1.46494 * 120.00263 * 89.99369 * 21 18 9 23 23 C 1.46506 * 119.99814 * 270.00132 * 21 18 9 24 24 N 1.31844 * 120.88762 * 359.97438 * 7 6 5 25 25 C 1.31842 * 121.78139 * 359.70920 * 24 7 6 26 26 H 1.09005 * 109.47614 * 59.99416 * 1 2 3 27 27 H 1.08998 * 109.47298 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47217 * 299.99607 * 1 2 3 29 29 H 1.09004 * 109.46497 * 240.00568 * 2 1 3 30 30 H 1.08995 * 109.47420 * 120.00077 * 2 1 3 31 31 H 1.08007 * 120.81652 * 0.02562 * 5 4 3 32 32 H 1.07995 * 120.39300 * 179.97438 * 6 5 4 33 33 H 1.08999 * 109.47220 * 215.19428 * 8 7 6 34 34 H 1.09007 * 109.47026 * 335.19628 * 8 7 6 35 35 H 0.97001 * 119.99949 * 180.02562 * 13 12 10 36 36 H 1.09000 * 109.46691 * 90.00581 * 22 21 18 37 37 H 1.08996 * 109.47482 * 210.00142 * 22 21 18 38 38 H 1.08994 * 109.47382 * 330.00695 * 22 21 18 39 39 H 1.08998 * 109.47003 * 89.99653 * 23 21 18 40 40 H 1.08997 * 109.47055 * 209.99903 * 23 21 18 41 41 H 1.09001 * 109.47031 * 329.99450 * 23 21 18 42 42 H 1.08000 * 119.66347 * 180.28678 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5254 -0.0005 5 6 3.8961 2.8066 0.0000 6 6 5.2752 2.9378 -0.0012 7 6 6.0613 1.8004 -0.0033 8 6 7.5623 1.9343 -0.0039 9 7 8.0607 1.8511 1.3712 10 6 8.1799 0.6321 1.9837 11 1 7.3277 -0.0286 2.0419 12 6 9.3963 0.2457 2.5295 13 7 9.4267 -0.6079 3.5310 14 14 10.9900 0.9371 1.8429 15 1 11.3957 2.1260 2.6349 16 1 12.0530 -0.0968 1.9224 17 1 10.7883 1.3318 0.4255 18 16 8.4796 3.2311 2.1850 19 8 9.4148 2.8412 3.1814 20 8 8.7618 4.2107 1.1950 21 7 7.1302 3.7546 2.9896 22 6 6.8647 3.2909 4.3536 23 6 6.2018 4.6814 2.3372 24 7 5.5154 0.6004 -0.0037 25 6 4.2077 0.4324 0.0035 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8932 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.2576 3.6778 0.0012 32 1 5.7309 3.9169 -0.0012 33 1 7.9985 1.1309 -0.5977 34 1 7.8412 2.8964 -0.4338 35 1 10.2767 -0.8776 3.9127 36 1 7.3306 3.9719 5.0659 37 1 5.7888 3.2655 4.5258 38 1 7.2773 2.2906 4.4842 39 1 5.4399 4.1153 1.8015 40 1 5.7257 5.3090 3.0905 41 1 6.7493 5.3094 1.6343 42 1 3.7971 -0.5665 0.0076 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589268599.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:26 Heat of formation + Delta-G solvation = -51.008150 kcal Electronic energy + Delta-G solvation = -27783.784596 eV Core-core repulsion = 23892.497370 eV Total energy + Delta-G solvation = -3891.287227 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.47722 -38.31963 -36.15684 -35.52906 -35.26423 -34.63482 -32.63150 -32.26206 -31.49959 -29.97726 -27.48907 -26.25685 -24.54346 -23.89232 -23.49276 -22.26507 -21.37350 -18.90158 -18.29222 -17.75837 -16.59337 -16.42682 -16.25921 -16.17349 -15.48110 -15.26078 -14.88947 -14.43212 -14.14781 -13.76787 -13.63574 -13.55705 -13.07731 -12.97304 -12.87136 -12.64064 -12.48871 -12.33759 -12.11011 -11.90330 -11.66560 -11.61475 -11.53800 -11.39451 -11.12512 -10.99427 -10.80258 -10.74284 -10.36790 -10.06256 -9.62658 -9.45581 -9.15741 -8.71883 -8.26820 -8.15923 -7.85515 -6.47051 -4.14967 1.32613 1.50812 1.79565 3.08148 3.35156 3.44605 3.59062 3.84062 4.12685 4.41947 4.62999 4.65964 4.72446 4.74008 4.90179 4.96601 5.04821 5.05255 5.21346 5.31624 5.41619 5.51217 5.56128 5.64661 5.75437 5.79771 5.82591 5.88463 5.93007 6.09431 6.15165 6.17942 6.30104 6.39800 6.46100 6.67335 6.72899 7.02929 7.30123 7.33977 7.76443 8.36080 8.42332 9.09684 9.17206 10.56859 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.016163 B = 0.004703 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.897659 B = 5951.719406 C = 6607.175852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 O -0.316 6.316 4 C 0.065 3.935 5 C -0.111 4.111 6 C -0.133 4.133 7 C 0.097 3.903 8 C 0.167 3.833 9 N -0.838 5.838 10 C -0.288 4.288 11 H 0.096 0.904 12 C 0.103 3.897 13 N -0.821 5.821 14 Si 0.841 3.159 15 H -0.238 1.238 16 H -0.284 1.284 17 H -0.262 1.262 18 S 2.660 3.340 19 O -0.966 6.966 20 O -1.023 7.023 21 N -1.016 6.016 22 C 0.105 3.895 23 C 0.080 3.920 24 N -0.417 5.417 25 C 0.020 3.980 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.137 0.863 32 H 0.142 0.858 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.279 0.721 36 H 0.038 0.962 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.512 3.499 -5.650 15.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.024 4.024 3 O -0.229 6.229 4 C 0.018 3.982 5 C -0.138 4.138 6 C -0.153 4.153 7 C -0.043 4.043 8 C 0.039 3.961 9 N -0.666 5.666 10 C -0.432 4.432 11 H 0.114 0.886 12 C -0.114 4.114 13 N -0.456 5.456 14 Si 0.665 3.335 15 H -0.162 1.162 16 H -0.211 1.211 17 H -0.186 1.186 18 S 2.684 3.316 19 O -0.949 6.949 20 O -1.007 7.007 21 N -0.851 5.851 22 C -0.042 4.042 23 C -0.067 4.067 24 N -0.126 5.126 25 C -0.139 4.139 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.155 0.845 32 H 0.160 0.840 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -13.211 3.497 -5.467 14.719 hybrid contribution -0.217 0.591 0.030 0.630 sum -13.428 4.088 -5.437 15.052 Atomic orbital electron populations 1.21761 0.92801 1.02813 1.03371 1.22795 0.95811 0.82047 1.01727 1.86025 1.18630 1.29235 1.88997 1.19997 0.83234 0.95417 0.99601 1.20780 0.94825 0.95194 1.02962 1.22026 0.93035 1.00604 0.99656 1.21925 0.98254 0.87655 0.96509 1.20250 0.86456 1.03125 0.86291 1.53265 1.77476 1.19501 1.16347 1.18652 0.97203 0.92535 1.34799 0.88595 1.25706 0.98857 0.93370 0.93425 1.69838 1.28209 1.30128 1.17429 0.87374 0.84224 0.81313 0.80587 1.16243 1.21072 1.18637 1.08499 0.75872 0.73717 0.73491 1.93532 1.59048 1.82172 1.60141 1.93373 1.85173 1.61723 1.60467 1.58435 1.42983 1.59025 1.24664 1.21289 1.00355 1.00267 0.82259 1.21676 0.93964 0.93113 0.97900 1.67480 1.11224 1.26116 1.07825 1.22933 0.89693 0.97911 1.03320 0.91653 0.90371 0.91566 0.91912 0.91748 0.84495 0.84024 0.88739 0.89418 0.91062 0.94344 0.92863 0.90039 0.93011 0.92415 0.91028 0.83074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 37.16 0.38 -0.68 16 2 C 0.05 0.48 5.47 37.16 0.20 0.68 16 3 O -0.32 -3.97 10.15 -19.47 -0.20 -4.17 16 4 C 0.06 0.93 6.71 -39.08 -0.26 0.66 16 5 C -0.11 -1.53 10.08 -39.14 -0.39 -1.93 16 6 C -0.13 -2.04 7.27 -39.46 -0.29 -2.32 16 7 C 0.10 1.77 6.23 -82.58 -0.51 1.26 16 8 C 0.17 3.35 5.99 -5.19 -0.03 3.32 16 9 N -0.84 -19.71 2.13 -61.08 -0.13 -19.84 16 10 C -0.29 -7.53 9.48 -15.06 -0.14 -7.67 16 11 H 0.10 2.66 8.06 -52.49 -0.42 2.24 16 12 C 0.10 2.83 4.51 -17.43 -0.08 2.75 16 13 N -0.82 -23.12 13.97 55.49 0.78 -22.34 16 14 Si 0.84 21.80 25.67 -169.99 -4.36 17.44 16 15 H -0.24 -6.50 6.10 56.52 0.34 -6.16 16 16 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 17 H -0.26 -6.51 7.11 56.52 0.40 -6.11 16 18 S 2.66 63.60 5.21 -107.50 -0.56 63.03 16 19 O -0.97 -26.18 11.74 -57.17 -0.67 -26.85 16 20 O -1.02 -24.72 15.24 -57.17 -0.87 -25.59 16 21 N -1.02 -20.19 3.64 -129.21 -0.47 -20.66 16 22 C 0.10 1.94 10.29 59.84 0.62 2.55 16 23 C 0.08 1.27 9.78 59.85 0.59 1.85 16 24 N -0.42 -7.76 10.27 -9.35 -0.10 -7.86 16 25 C 0.02 0.32 10.22 -17.37 -0.18 0.14 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.53 7.69 -51.93 -0.40 0.13 16 30 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 31 H 0.14 1.53 8.06 -52.48 -0.42 1.11 16 32 H 0.14 1.95 6.63 -52.49 -0.35 1.61 16 33 H 0.09 1.87 8.12 -51.93 -0.42 1.45 16 34 H 0.09 1.63 6.71 -51.92 -0.35 1.28 16 35 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 38 H 0.08 1.72 7.79 -51.93 -0.40 1.32 16 39 H 0.05 0.77 4.69 -51.93 -0.24 0.52 16 40 H 0.06 0.77 8.07 -51.93 -0.42 0.35 16 41 H 0.07 1.13 7.02 -51.93 -0.36 0.77 16 42 H 0.15 1.96 6.32 -52.49 -0.33 1.63 16 LS Contribution 350.43 15.07 5.28 5.28 Total: -1.00 -32.28 350.43 -7.23 -39.51 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -5.83 Total: 1.44 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -0.10 Total: 0.62 kcal Atomic # 7 Polarization: -70.79 SS G_CDS: 0.08 Total: -70.71 kcal Atomic # 8 Polarization: -54.88 SS G_CDS: -1.74 Total: -56.62 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.36 Total: 17.44 kcal Atomic # 16 Polarization: 63.60 SS G_CDS: -0.56 Total: 63.03 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.28 -7.23 -39.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589268599.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.495 kcal (2) G-P(sol) polarization free energy of solvation -32.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds