Wall clock time and date at job start Tue Mar 31 2020 06:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34230 * 117.00504 * 2 1 4 4 O 1.20829 * 119.99343 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00639 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.52268 * 299.91906 * 5 3 2 7 7 C 1.53036 * 109.49967 * 179.84261 * 5 3 2 8 8 C 1.53043 * 109.53907 * 178.68198 * 7 5 3 9 9 H 1.08994 * 109.49970 * 301.40977 * 8 7 5 10 10 O 1.42902 * 109.49915 * 181.31148 * 8 7 5 11 11 C 1.53199 * 109.31336 * 61.36070 * 8 7 5 12 12 N 1.46920 * 108.77371 * 305.36816 * 11 8 7 13 13 C 1.34775 * 120.63023 * 233.58458 * 12 11 8 14 14 O 1.21583 * 120.00427 * 174.79497 * 13 12 11 15 15 N 1.34780 * 120.00043 * 354.79717 * 13 12 11 16 16 C 1.46504 * 120.00372 * 184.98117 * 15 13 12 17 17 C 1.50700 * 109.46767 * 180.02562 * 16 15 13 18 18 O 1.21289 * 120.00600 * 0.02562 * 17 16 15 19 19 N 1.34781 * 119.99454 * 180.02562 * 17 16 15 20 20 C 1.37090 * 119.99951 * 179.97438 * 19 17 16 21 21 H 1.07998 * 119.99897 * 0.02562 * 20 19 17 22 22 C 1.38955 * 120.00023 * 179.97438 * 20 19 17 23 23 N 1.31412 * 120.00030 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99834 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47132 * 60.00118 * 24 22 20 26 26 H 1.48499 * 109.46965 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46950 * 299.99762 * 24 22 20 28 28 C 1.46928 * 118.74235 * 53.60966 * 12 11 8 29 29 H 1.09004 * 109.47101 * 59.99550 * 1 2 3 30 30 H 1.09000 * 109.46881 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47118 * 299.99764 * 1 2 3 32 32 H 1.08999 * 109.45712 * 298.69857 * 7 5 3 33 33 H 1.08996 * 109.46872 * 58.67319 * 7 5 3 34 34 H 0.96696 * 114.00239 * 179.97438 * 10 8 7 35 35 H 1.09001 * 109.58261 * 65.15291 * 11 8 7 36 36 H 1.08996 * 109.58428 * 185.43517 * 11 8 7 37 37 H 0.97006 * 119.99685 * 4.98645 * 15 13 12 38 38 H 1.08995 * 109.46968 * 300.00056 * 16 15 13 39 39 H 1.09004 * 109.46712 * 60.00002 * 16 15 13 40 40 H 0.97004 * 119.99835 * 0.02562 * 19 17 16 41 41 H 0.96997 * 119.99999 * 180.02562 * 23 22 20 42 42 H 1.08997 * 109.58605 * 186.60436 * 28 12 11 43 43 H 1.08997 * 109.58538 * 66.17628 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9572 0.7820 0.8896 7 6 4.0009 2.7422 -0.0044 8 6 5.5288 2.8236 0.0282 9 1 5.9013 2.3162 0.9180 10 8 5.9330 4.1940 0.0554 11 6 6.0990 2.1471 -1.2225 12 7 5.5691 0.7791 -1.3034 13 6 6.4018 -0.2738 -1.4233 14 8 5.9588 -1.4057 -1.3941 15 7 7.7257 -0.0722 -1.5756 16 6 8.6172 -1.2097 -1.8152 17 6 10.0353 -0.7172 -1.9479 18 8 10.2775 0.4673 -1.8514 19 7 11.0344 -1.5931 -2.1739 20 6 12.3244 -1.1452 -2.2952 21 1 12.5400 -0.0904 -2.2092 22 6 13.3545 -2.0483 -2.5276 23 7 13.0922 -3.3317 -2.6317 24 14 15.1123 -1.4379 -2.6922 25 1 15.5158 -0.7477 -1.4408 26 1 16.0159 -2.5909 -2.9356 27 1 15.2024 -0.4898 -3.8316 28 6 4.1142 0.5808 -1.2515 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.6306 3.2282 -0.9071 33 1 3.5920 3.2445 0.8722 34 1 6.8913 4.3210 0.0773 35 1 5.8012 2.7073 -2.1088 36 1 7.1866 2.1167 -1.1578 37 1 8.0882 0.8263 -1.5265 38 1 8.5514 -1.9054 -0.9787 39 1 8.3207 -1.7166 -2.7335 40 1 10.8406 -2.5405 -2.2514 41 1 13.8113 -3.9622 -2.7936 42 1 3.8922 -0.4853 -1.2048 43 1 3.6546 1.0133 -2.1402 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592023617.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:43 Heat of formation + Delta-G solvation = -191.161068 kcal Electronic energy + Delta-G solvation = -28294.623530 eV Core-core repulsion = 23954.505945 eV Total energy + Delta-G solvation = -4340.117584 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.151 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.23790 -40.29408 -38.65024 -38.00746 -36.87833 -35.94059 -34.59071 -33.88718 -32.97614 -31.40907 -30.48013 -28.22758 -27.75851 -25.63126 -24.82193 -23.95651 -22.06853 -20.68405 -19.79986 -19.66633 -18.61118 -18.09776 -17.78471 -17.61696 -16.97070 -16.58037 -16.32610 -15.67795 -15.65021 -15.16098 -14.73113 -14.59345 -14.52050 -14.24696 -14.23645 -13.77692 -13.56092 -13.33539 -13.23151 -13.05765 -12.69907 -12.42732 -12.19973 -12.00700 -11.66746 -11.64211 -11.50947 -11.15812 -11.13948 -11.12465 -10.85181 -10.55409 -10.53553 -10.34826 -10.05968 -9.66371 -9.07643 -8.68027 -8.63103 -8.14007 -6.54755 -3.97037 1.75986 2.18321 2.57586 3.10806 3.19109 3.19513 3.22904 3.66731 3.70339 3.94291 4.09830 4.18753 4.35297 4.43341 4.53541 4.63067 4.75524 4.82111 4.83108 4.88005 4.97598 5.13789 5.18619 5.23014 5.33044 5.42400 5.46815 5.68390 5.80853 5.84709 5.94706 5.98564 6.02557 6.18938 6.63846 6.82659 7.29329 7.34706 7.42451 7.88165 7.99522 8.40774 8.61720 9.00766 9.35305 9.82793 10.61914 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.023981 B = 0.002286 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.319621 B =12245.616760 C =13281.593579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.353 6.353 3 C 0.473 3.527 4 O -0.502 6.502 5 C -0.095 4.095 6 H 0.119 0.881 7 C -0.098 4.098 8 C 0.096 3.904 9 H 0.066 0.934 10 O -0.559 6.559 11 C 0.075 3.925 12 N -0.627 5.627 13 C 0.711 3.289 14 O -0.588 6.588 15 N -0.723 5.723 16 C 0.126 3.874 17 C 0.428 3.572 18 O -0.600 6.600 19 N -0.547 5.547 20 C -0.306 4.306 21 H 0.105 0.895 22 C 0.026 3.974 23 N -0.894 5.894 24 Si 0.934 3.066 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.272 1.272 28 C 0.141 3.859 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.386 0.614 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.406 0.594 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.396 0.604 41 H 0.275 0.725 42 H 0.113 0.887 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.069 7.274 4.838 21.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.269 6.269 3 C 0.315 3.685 4 O -0.389 6.389 5 C -0.115 4.115 6 H 0.136 0.864 7 C -0.135 4.135 8 C 0.036 3.964 9 H 0.084 0.916 10 O -0.365 6.365 11 C -0.049 4.049 12 N -0.366 5.366 13 C 0.412 3.588 14 O -0.466 6.466 15 N -0.382 5.382 16 C -0.002 4.002 17 C 0.213 3.787 18 O -0.487 6.487 19 N -0.182 5.182 20 C -0.436 4.436 21 H 0.123 0.877 22 C -0.177 4.177 23 N -0.534 5.534 24 Si 0.761 3.239 25 H -0.198 1.198 26 H -0.208 1.208 27 H -0.198 1.198 28 C 0.017 3.983 29 H 0.083 0.917 30 H 0.122 0.878 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.234 0.766 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.246 0.754 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.230 0.770 41 H 0.085 0.915 42 H 0.131 0.869 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.908 7.419 4.841 22.707 hybrid contribution 1.387 0.029 -0.073 1.390 sum -19.520 7.448 4.769 21.430 Atomic orbital electron populations 1.23313 0.76003 1.03981 1.02590 1.86546 1.23644 1.32996 1.83751 1.23357 0.91337 0.81501 0.72295 1.90690 1.66960 1.36334 1.44876 1.21401 0.87774 0.99097 1.03211 0.86358 1.21317 0.93690 0.93188 1.05324 1.22020 0.94811 0.82760 0.96842 0.91631 1.86502 1.28785 1.23987 1.97201 1.22482 0.99857 0.83079 0.99493 1.46997 1.05666 1.05194 1.78786 1.15693 0.81185 0.84025 0.77915 1.90917 1.76226 1.20831 1.58620 1.44967 1.04725 1.11980 1.76531 1.20830 0.88672 0.88083 1.02596 1.19727 0.86137 0.87171 0.85643 1.90477 1.83796 1.16483 1.57966 1.41783 1.06364 1.09252 1.60777 1.19672 0.81762 0.95330 1.46798 0.87715 1.25336 1.00696 0.94936 0.96721 1.69604 1.34381 1.01414 1.47957 0.85866 0.80896 0.78041 0.79125 1.19764 1.20843 1.19766 1.21324 0.78969 1.03212 0.94824 0.91746 0.87830 0.91838 0.89805 0.89737 0.76565 0.90063 0.89111 0.75406 0.89799 0.89926 0.76977 0.91483 0.86864 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 101.05 1.07 1.29 16 2 O -0.35 -3.28 10.49 -39.26 -0.41 -3.69 16 3 C 0.47 4.72 7.26 36.00 0.26 4.98 16 4 O -0.50 -6.10 15.73 -18.75 -0.29 -6.40 16 5 C -0.09 -0.85 2.78 -91.66 -0.25 -1.10 16 6 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 7 C -0.10 -0.89 4.11 -26.69 -0.11 -1.00 16 8 C 0.10 0.84 3.62 -26.61 -0.10 0.74 16 9 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 10 O -0.56 -4.93 13.32 -35.23 -0.47 -5.40 16 11 C 0.08 0.71 6.01 -3.71 -0.02 0.69 16 12 N -0.63 -7.32 2.97 -178.50 -0.53 -7.85 16 13 C 0.71 10.96 8.29 -86.92 -0.72 10.24 16 14 O -0.59 -10.79 15.77 5.29 0.08 -10.71 16 15 N -0.72 -11.57 5.44 -66.41 -0.36 -11.93 16 16 C 0.13 2.25 6.16 -5.19 -0.03 2.22 16 17 C 0.43 9.46 7.85 -10.98 -0.09 9.37 16 18 O -0.60 -14.72 15.24 5.55 0.08 -14.63 16 19 N -0.55 -13.21 5.29 -10.96 -0.06 -13.27 16 20 C -0.31 -8.13 9.68 -14.93 -0.14 -8.27 16 21 H 0.11 2.88 7.16 -52.49 -0.38 2.51 16 22 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 23 N -0.89 -23.44 13.05 55.50 0.72 -22.72 16 24 Si 0.93 20.15 29.55 -169.99 -5.02 15.13 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 26 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 27 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 28 C 0.14 1.42 5.65 -3.71 -0.02 1.40 16 29 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 30 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 32 H 0.08 0.81 8.13 -51.93 -0.42 0.39 16 33 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 34 H 0.39 2.03 9.08 45.56 0.41 2.45 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.88 5.65 -51.93 -0.29 0.58 16 37 H 0.41 6.27 4.93 -40.82 -0.20 6.07 16 38 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.40 9.21 7.90 -40.82 -0.32 8.89 16 41 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 42 H 0.11 1.29 6.99 -51.93 -0.36 0.93 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 365.13 15.07 5.50 5.50 Total: -1.00 -33.43 365.13 -5.93 -39.37 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -4.92 Total: 15.45 kcal Atomic # 6 Polarization: 21.40 SS G_CDS: -0.26 Total: 21.14 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: -0.23 Total: -55.77 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -1.01 Total: -40.82 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.43 -5.93 -39.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592023617.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.796 kcal (2) G-P(sol) polarization free energy of solvation -33.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds