Wall clock time and date at job start Tue Mar 31 2020 06:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 117.00409 * 2 1 4 4 O 1.20828 * 119.99790 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00398 * 179.97438 * 3 2 1 6 6 H 1.09008 * 109.52233 * 59.92205 * 5 3 2 7 7 C 1.53037 * 109.49873 * 179.97438 * 5 3 2 8 8 C 1.53039 * 109.52762 * 181.31132 * 7 5 3 9 9 H 1.09000 * 109.49931 * 58.63074 * 8 7 5 10 10 O 1.42906 * 109.49935 * 178.69332 * 8 7 5 11 11 C 1.53196 * 109.31451 * 298.64524 * 8 7 5 12 12 N 1.46921 * 108.77333 * 54.63340 * 11 8 7 13 13 C 1.34777 * 120.63077 * 126.41418 * 12 11 8 14 14 O 1.21583 * 119.99720 * 354.77376 * 13 12 11 15 15 N 1.34775 * 120.00331 * 174.76826 * 13 12 11 16 16 C 1.46500 * 120.00136 * 184.98398 * 15 13 12 17 17 C 1.50702 * 109.46779 * 179.97438 * 16 15 13 18 18 O 1.21293 * 120.00236 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99728 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99952 * 180.02562 * 19 17 16 21 21 H 1.07997 * 120.00273 * 359.97438 * 20 19 17 22 22 C 1.38949 * 119.99676 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99642 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00377 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47143 * 89.99820 * 24 22 20 26 26 H 1.48499 * 109.47149 * 209.99685 * 24 22 20 27 27 H 1.48497 * 109.47199 * 329.99750 * 24 22 20 28 28 C 1.46925 * 118.73975 * 306.39201 * 12 11 8 29 29 H 1.08995 * 109.46864 * 59.99514 * 1 2 3 30 30 H 1.09002 * 109.47017 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46751 * 300.00033 * 1 2 3 32 32 H 1.09001 * 109.46087 * 61.30201 * 7 5 3 33 33 H 1.08998 * 109.46072 * 301.32504 * 7 5 3 34 34 H 0.96693 * 114.00077 * 180.02562 * 10 8 7 35 35 H 1.09000 * 109.58448 * 174.42450 * 11 8 7 36 36 H 1.08996 * 109.58482 * 294.70308 * 11 8 7 37 37 H 0.97007 * 119.99681 * 4.98016 * 15 13 12 38 38 H 1.08996 * 109.47056 * 299.99811 * 16 15 13 39 39 H 1.09002 * 109.46875 * 60.00641 * 16 15 13 40 40 H 0.97002 * 120.00194 * 0.02562 * 19 17 16 41 41 H 0.97002 * 120.00052 * 180.02562 * 23 22 20 42 42 H 1.08999 * 109.58930 * 173.40030 * 28 12 11 43 43 H 1.09001 * 109.58779 * 293.67766 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9574 0.7795 -0.8882 7 6 4.0010 2.7422 -0.0002 8 6 5.5289 2.8231 -0.0326 9 1 5.9015 2.3134 -0.9211 10 8 5.9334 4.1934 -0.0640 11 6 6.0986 2.1504 1.2203 12 7 5.5685 0.7828 1.3053 13 6 6.4009 -0.2699 1.4287 14 8 7.6040 -0.1031 1.3752 15 7 5.8997 -1.5076 1.6114 16 6 6.8029 -2.6351 1.8546 17 6 5.9966 -3.8969 2.0249 18 8 4.7866 -3.8582 1.9500 19 7 6.6201 -5.0685 2.2594 20 6 5.8867 -6.2165 2.4138 21 1 4.8093 -6.1819 2.3480 22 6 6.5296 -7.4244 2.6551 23 7 5.8266 -8.5247 2.8036 24 14 8.3931 -7.4842 2.7697 25 1 8.8097 -7.2659 4.1783 26 1 8.8749 -8.8119 2.3111 27 1 8.9762 -6.4224 1.9108 28 6 4.1136 0.5847 1.2536 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.6306 3.2311 0.9008 33 1 3.5922 3.2415 -0.8786 34 1 6.8918 4.3201 -0.0860 35 1 7.1862 2.1174 1.1548 36 1 5.8029 2.7149 2.1046 37 1 4.9409 -1.6518 1.5820 38 1 7.4798 -2.7476 1.0077 39 1 7.3810 -2.4489 2.7597 40 1 7.5878 -5.0995 2.3189 41 1 6.2753 -9.3679 2.9723 42 1 3.8913 -0.4815 1.2102 43 1 3.6540 1.0177 2.1421 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592023618.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:47 Heat of formation + Delta-G solvation = -183.801695 kcal Electronic energy + Delta-G solvation = -28617.593941 eV Core-core repulsion = 24277.795483 eV Total energy + Delta-G solvation = -4339.798458 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.151 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.24365 -40.30831 -38.78403 -38.08690 -36.82664 -36.09910 -34.63618 -33.83694 -33.01361 -31.82971 -30.67464 -28.18323 -27.80159 -25.63251 -24.65884 -24.14312 -21.93649 -20.70633 -19.86649 -19.67621 -18.96988 -18.26405 -17.84193 -17.55965 -16.94778 -16.61776 -16.29042 -15.83324 -15.63344 -15.21714 -15.04901 -14.65799 -14.57048 -14.36364 -14.01966 -13.71974 -13.48658 -13.29508 -13.17046 -13.04862 -12.74773 -12.54876 -12.31355 -12.18523 -12.13953 -11.72803 -11.55905 -11.25948 -11.08940 -11.06637 -10.81064 -10.66369 -10.58693 -10.18331 -10.08290 -9.72322 -9.16376 -8.80232 -8.70008 -8.33030 -6.43189 -3.95869 1.79740 2.20682 2.51913 2.97610 3.02396 3.10861 3.11327 3.53799 3.68081 3.79431 4.01472 4.20647 4.26814 4.44208 4.46841 4.54457 4.65977 4.83753 4.90502 4.95100 4.97167 5.09621 5.11856 5.29588 5.32595 5.35914 5.43920 5.61847 5.66600 5.74562 5.78684 5.80543 6.05173 6.14090 6.52114 6.75652 7.23352 7.38992 7.42017 7.90953 7.98486 8.40858 8.54278 8.79173 9.27218 9.60391 10.68924 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.014216 B = 0.002935 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.090067 B = 9538.874910 C =11374.254198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.351 6.351 3 C 0.471 3.529 4 O -0.502 6.502 5 C -0.093 4.093 6 H 0.119 0.881 7 C -0.098 4.098 8 C 0.094 3.906 9 H 0.065 0.935 10 O -0.560 6.560 11 C 0.097 3.903 12 N -0.626 5.626 13 C 0.712 3.288 14 O -0.591 6.591 15 N -0.723 5.723 16 C 0.124 3.876 17 C 0.438 3.562 18 O -0.579 6.579 19 N -0.575 5.575 20 C -0.310 4.310 21 H 0.122 0.878 22 C 0.045 3.955 23 N -0.874 5.874 24 Si 0.879 3.121 25 H -0.269 1.269 26 H -0.275 1.275 27 H -0.267 1.267 28 C 0.118 3.882 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.384 0.616 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.408 0.592 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.375 0.625 41 H 0.276 0.724 42 H 0.102 0.898 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.160 20.739 -5.325 21.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.267 6.267 3 C 0.313 3.687 4 O -0.389 6.389 5 C -0.113 4.113 6 H 0.137 0.863 7 C -0.135 4.135 8 C 0.034 3.966 9 H 0.083 0.917 10 O -0.365 6.365 11 C -0.027 4.027 12 N -0.365 5.365 13 C 0.414 3.586 14 O -0.469 6.469 15 N -0.383 5.383 16 C -0.005 4.005 17 C 0.224 3.776 18 O -0.463 6.463 19 N -0.213 5.213 20 C -0.439 4.439 21 H 0.139 0.861 22 C -0.159 4.159 23 N -0.513 5.513 24 Si 0.705 3.295 25 H -0.194 1.194 26 H -0.200 1.200 27 H -0.192 1.192 28 C -0.006 4.006 29 H 0.081 0.919 30 H 0.124 0.876 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.232 0.768 35 H 0.119 0.881 36 H 0.094 0.906 37 H 0.249 0.751 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.208 0.792 41 H 0.086 0.914 42 H 0.120 0.880 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.970 20.975 -5.329 21.844 hybrid contribution 1.310 -0.491 0.055 1.400 sum -1.659 20.485 -5.274 21.218 Atomic orbital electron populations 1.23341 0.75705 1.04274 1.02492 1.86558 1.23891 1.32678 1.83543 1.23313 0.91282 0.81672 0.72454 1.90687 1.66942 1.36363 1.44877 1.21352 0.88085 0.99223 1.02675 0.86298 1.21315 0.93783 0.93048 1.05367 1.22059 0.94694 0.82599 0.97208 0.91716 1.86508 1.28502 1.24222 1.97233 1.22226 1.01160 0.80918 0.98380 1.47004 1.05174 1.05727 1.78618 1.15666 0.84818 0.80310 0.77832 1.90902 1.12747 1.84401 1.58892 1.44968 1.11649 1.05390 1.76263 1.20850 0.92055 0.84940 1.02610 1.19626 0.88568 0.84435 0.85014 1.90538 1.13854 1.85573 1.56332 1.42112 1.08190 1.07491 1.63510 1.19439 0.94673 0.83023 1.46723 0.86053 1.25066 0.98709 0.95034 0.97070 1.69617 1.35955 0.99029 1.46694 0.86673 0.84892 0.78770 0.79172 1.19393 1.19995 1.19188 1.21579 0.80774 1.02157 0.96069 0.91860 0.87569 0.91710 0.89777 0.89706 0.76845 0.88105 0.90634 0.75110 0.89680 0.89812 0.79223 0.91368 0.87986 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.56 101.05 1.07 1.35 16 2 O -0.35 -3.66 10.50 -39.26 -0.41 -4.07 16 3 C 0.47 4.94 7.26 36.00 0.26 5.20 16 4 O -0.50 -6.32 15.73 -18.75 -0.29 -6.61 16 5 C -0.09 -0.83 2.78 -91.67 -0.25 -1.08 16 6 H 0.12 0.97 8.14 -51.92 -0.42 0.54 16 7 C -0.10 -0.86 4.11 -26.69 -0.11 -0.97 16 8 C 0.09 0.78 3.62 -26.61 -0.10 0.68 16 9 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 10 O -0.56 -4.46 13.32 -35.23 -0.47 -4.93 16 11 C 0.10 0.90 6.07 -3.71 -0.02 0.88 16 12 N -0.63 -6.99 2.97 -178.52 -0.53 -7.52 16 13 C 0.71 10.47 8.29 -86.92 -0.72 9.75 16 14 O -0.59 -10.28 15.77 5.29 0.08 -10.20 16 15 N -0.72 -11.11 5.44 -66.41 -0.36 -11.47 16 16 C 0.12 2.06 6.16 -5.19 -0.03 2.03 16 17 C 0.44 9.28 7.85 -10.98 -0.09 9.20 16 18 O -0.58 -14.07 15.24 5.55 0.08 -13.99 16 19 N -0.58 -12.99 5.09 -10.96 -0.06 -13.05 16 20 C -0.31 -8.36 10.16 -14.93 -0.15 -8.51 16 21 H 0.12 3.73 7.39 -52.49 -0.39 3.34 16 22 C 0.05 1.20 5.50 -17.47 -0.10 1.10 16 23 N -0.87 -24.59 13.96 55.50 0.77 -23.81 16 24 Si 0.88 18.63 27.74 -169.99 -4.71 13.92 16 25 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 26 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 27 H -0.27 -5.15 6.52 56.52 0.37 -4.78 16 28 C 0.12 1.14 5.60 -3.73 -0.02 1.12 16 29 H 0.06 0.47 8.13 -51.93 -0.42 0.04 16 30 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 32 H 0.08 0.79 8.13 -51.93 -0.42 0.37 16 33 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 34 H 0.38 1.53 9.08 45.56 0.41 1.95 16 35 H 0.10 1.00 7.00 -51.93 -0.36 0.64 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.41 6.20 4.93 -40.82 -0.20 6.00 16 38 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.37 7.45 5.76 -40.82 -0.24 7.22 16 41 H 0.28 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.10 1.05 5.65 -51.93 -0.29 0.76 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 362.00 15.07 5.46 5.46 Total: -1.00 -34.66 362.00 -5.58 -40.24 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -4.88 Total: 15.30 kcal Atomic # 6 Polarization: 21.00 SS G_CDS: -0.26 Total: 20.73 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: -0.17 Total: -55.85 kcal Atomic # 8 Polarization: -38.80 SS G_CDS: -1.01 Total: -39.80 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -4.71 Total: 13.92 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.66 -5.58 -40.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592023618.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.560 kcal (2) G-P(sol) polarization free energy of solvation -34.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds