Wall clock time and date at job start Tue Mar 31 2020 06:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34224 * 117.00070 * 2 1 4 4 O 1.20820 * 120.00415 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99733 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.49360 * 60.06782 * 5 3 2 7 7 C 1.53034 * 109.50054 * 180.16293 * 5 3 2 8 8 C 1.53039 * 109.54301 * 181.31633 * 7 5 3 9 9 H 1.09000 * 109.49922 * 178.68324 * 8 7 5 10 10 O 1.42900 * 109.49230 * 58.62165 * 8 7 5 11 11 C 1.53623 * 109.24008 * 298.51358 * 8 7 5 12 12 N 1.46923 * 108.54327 * 54.85580 * 11 8 7 13 13 C 1.34776 * 120.63429 * 126.36875 * 12 11 8 14 14 O 1.21594 * 119.99878 * 4.75694 * 13 12 11 15 15 N 1.34777 * 120.00338 * 185.03598 * 13 12 11 16 16 C 1.46501 * 119.99756 * 174.64666 * 15 13 12 17 17 C 1.50702 * 109.46655 * 180.02562 * 16 15 13 18 18 O 1.21292 * 120.00138 * 359.97438 * 17 16 15 19 19 N 1.34777 * 119.99945 * 180.02562 * 17 16 15 20 20 C 1.37093 * 120.00192 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00107 * 359.97438 * 20 19 17 22 22 C 1.38957 * 120.00052 * 179.97438 * 20 19 17 23 23 N 1.31407 * 119.99781 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99671 * 179.97438 * 22 20 19 25 25 H 1.48490 * 109.47406 * 89.99906 * 24 22 20 26 26 H 1.48510 * 109.46753 * 209.99856 * 24 22 20 27 27 H 1.48503 * 109.47370 * 329.99219 * 24 22 20 28 28 C 1.46932 * 118.73893 * 306.09187 * 12 11 8 29 29 H 1.09002 * 109.47299 * 300.00352 * 1 2 3 30 30 H 1.09008 * 109.46839 * 59.99591 * 1 2 3 31 31 H 1.09002 * 109.47804 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46092 * 301.34101 * 7 5 3 33 33 H 1.09003 * 109.45688 * 61.29837 * 7 5 3 34 34 H 0.96701 * 113.99852 * 180.02562 * 10 8 7 35 35 H 1.08995 * 109.73814 * 295.11584 * 11 8 7 36 36 H 1.09006 * 109.66170 * 174.54379 * 11 8 7 37 37 H 0.96996 * 120.00081 * 354.64644 * 15 13 12 38 38 H 1.08995 * 109.47376 * 299.99837 * 16 15 13 39 39 H 1.09000 * 109.46824 * 60.00628 * 16 15 13 40 40 H 0.97005 * 119.99916 * 359.97438 * 19 17 16 41 41 H 0.97005 * 119.99465 * 180.02562 * 23 22 20 42 42 H 1.08999 * 109.58316 * 173.64841 * 28 12 11 43 43 H 1.09001 * 109.58302 * 294.07144 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9568 0.7815 -0.8897 7 6 4.0011 2.7420 0.0046 8 6 5.5290 2.8233 -0.0280 9 1 5.8373 3.8686 -0.0487 10 8 6.0171 2.1588 -1.1951 11 6 6.0988 2.1472 1.2283 12 7 5.5692 0.7788 1.3034 13 6 6.4017 -0.2742 1.4233 14 8 7.5965 -0.0924 1.5573 15 7 5.9108 -1.5289 1.3890 16 6 6.8248 -2.6737 1.4012 17 6 6.0287 -3.9525 1.3562 18 8 4.8171 -3.9116 1.3182 19 7 6.6631 -5.1417 1.3592 20 6 5.9389 -6.3050 1.3178 21 1 4.8601 -6.2686 1.2831 22 6 6.5930 -7.5310 1.3204 23 7 7.9057 -7.5753 1.3620 24 14 5.6062 -9.1161 1.2646 25 1 5.3898 -9.5150 -0.1493 26 1 6.3510 -10.1880 1.9729 27 1 4.2934 -8.9055 1.9260 28 6 4.1142 0.5805 1.2515 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3635 -1.0276 -0.0005 32 1 3.5920 3.2444 -0.8720 33 1 3.6308 3.2280 0.9073 34 1 6.9803 2.1708 -1.2806 35 1 5.7977 2.7048 2.1151 36 1 7.1866 2.1150 1.1661 37 1 4.9523 -1.6739 1.3563 38 1 7.4811 -2.6240 0.5324 39 1 7.4242 -2.6503 2.3113 40 1 7.6321 -5.1744 1.3900 41 1 8.3622 -8.4312 1.3635 42 1 3.8922 -0.4856 1.2046 43 1 3.6546 1.0129 2.1402 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592023619.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:51 Heat of formation + Delta-G solvation = -189.735375 kcal Electronic energy + Delta-G solvation = -28883.812909 eV Core-core repulsion = 24543.757147 eV Total energy + Delta-G solvation = -4340.055761 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.151 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.14473 -40.18298 -38.62097 -37.89407 -36.71314 -35.65899 -34.47957 -33.68752 -32.85241 -31.37766 -30.74823 -28.06870 -27.62864 -25.52504 -24.60030 -24.24913 -21.85282 -20.51977 -19.72840 -19.66954 -18.59560 -17.95424 -17.75081 -17.27263 -16.76511 -16.71562 -15.97615 -15.62940 -15.47515 -15.05447 -14.80791 -14.49498 -14.44358 -14.23186 -14.08408 -13.66452 -13.56586 -13.38052 -13.32082 -12.96898 -12.35578 -12.26655 -12.06388 -11.88137 -11.64359 -11.62127 -11.47354 -11.20726 -11.11796 -10.99857 -10.68721 -10.45399 -10.43568 -10.30886 -9.98726 -9.62495 -8.98310 -8.61313 -8.50538 -8.08831 -6.50471 -3.92255 1.90460 2.39069 2.66015 3.12334 3.22734 3.27942 3.28931 3.76085 3.88684 3.94702 4.13704 4.22708 4.43169 4.48112 4.56550 4.78965 4.87169 4.89598 4.92654 4.98784 5.17630 5.18319 5.25300 5.33605 5.37850 5.39120 5.49241 5.69451 5.80456 5.90135 6.00852 6.08298 6.14343 6.30674 6.72502 6.92142 7.39549 7.47074 7.48513 7.93482 8.08811 8.46346 8.70587 9.05810 9.40687 9.88617 10.66479 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.013480 B = 0.003024 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.625162 B = 9256.649360 C =10960.952953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.351 6.351 3 C 0.469 3.531 4 O -0.508 6.508 5 C -0.092 4.092 6 H 0.126 0.874 7 C -0.095 4.095 8 C 0.091 3.909 9 H 0.074 0.926 10 O -0.559 6.559 11 C 0.095 3.905 12 N -0.622 5.622 13 C 0.714 3.286 14 O -0.594 6.594 15 N -0.723 5.723 16 C 0.127 3.873 17 C 0.429 3.571 18 O -0.597 6.597 19 N -0.549 5.549 20 C -0.304 4.304 21 H 0.105 0.895 22 C 0.026 3.974 23 N -0.895 5.895 24 Si 0.933 3.067 25 H -0.277 1.277 26 H -0.283 1.283 27 H -0.269 1.269 28 C 0.122 3.878 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.382 0.618 35 H 0.075 0.925 36 H 0.101 0.899 37 H 0.407 0.593 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.396 0.604 41 H 0.274 0.726 42 H 0.099 0.901 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.780 19.813 -1.886 21.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.267 6.267 3 C 0.312 3.688 4 O -0.396 6.396 5 C -0.112 4.112 6 H 0.144 0.856 7 C -0.132 4.132 8 C 0.031 3.969 9 H 0.092 0.908 10 O -0.365 6.365 11 C -0.028 4.028 12 N -0.360 5.360 13 C 0.415 3.585 14 O -0.473 6.473 15 N -0.383 5.383 16 C -0.001 4.001 17 C 0.214 3.786 18 O -0.483 6.483 19 N -0.184 5.184 20 C -0.434 4.434 21 H 0.123 0.877 22 C -0.177 4.177 23 N -0.535 5.535 24 Si 0.759 3.241 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.193 1.193 28 C -0.003 4.003 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.123 0.877 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.230 0.770 35 H 0.093 0.907 36 H 0.119 0.881 37 H 0.247 0.753 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.230 0.770 41 H 0.084 0.916 42 H 0.117 0.883 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.431 19.916 -1.904 21.342 hybrid contribution 0.029 -0.816 0.040 0.818 sum -7.402 19.100 -1.864 20.568 Atomic orbital electron populations 1.23316 0.76029 1.04136 1.02365 1.86580 1.23663 1.32904 1.83514 1.23606 0.91659 0.81516 0.72044 1.90654 1.67120 1.36404 1.45413 1.21388 0.87040 0.99780 1.03029 0.85631 1.21442 0.93463 0.93849 1.04473 1.22281 0.93992 0.95332 0.85275 0.90834 1.86505 1.27197 1.79652 1.43146 1.22339 1.01164 0.81491 0.97839 1.46945 1.05034 1.05654 1.78370 1.15666 0.84694 0.80409 0.77739 1.90891 1.13566 1.84704 1.58171 1.44973 1.11433 1.03373 1.78487 1.20809 0.91787 0.84361 1.03157 1.19754 0.88480 0.84821 0.85523 1.90495 1.13892 1.86688 1.57243 1.41780 1.09655 1.04322 1.62636 1.19727 0.93199 0.82333 1.48117 0.87675 1.25319 0.95824 0.99735 0.96838 1.69616 1.07145 1.27385 1.49360 0.85819 0.79390 0.80392 0.78457 1.20283 1.20833 1.19324 1.21526 0.80923 1.02016 0.95787 0.91837 0.91936 0.87707 0.89879 0.89423 0.77010 0.90697 0.88060 0.75300 0.90016 0.89916 0.77029 0.91613 0.88301 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.37 16 2 O -0.35 -4.04 10.49 -39.24 -0.41 -4.45 16 3 C 0.47 5.37 7.26 36.01 0.26 5.63 16 4 O -0.51 -6.62 15.73 -18.75 -0.29 -6.91 16 5 C -0.09 -0.95 2.64 -91.65 -0.24 -1.19 16 6 H 0.13 1.44 7.61 -51.93 -0.40 1.04 16 7 C -0.09 -0.82 4.21 -26.69 -0.11 -0.94 16 8 C 0.09 0.72 3.81 -26.39 -0.10 0.62 16 9 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 10 O -0.56 -5.38 12.52 -35.23 -0.44 -5.82 16 11 C 0.10 0.88 6.10 -3.49 -0.02 0.86 16 12 N -0.62 -7.54 2.91 -178.23 -0.52 -8.06 16 13 C 0.71 11.42 8.30 -86.92 -0.72 10.70 16 14 O -0.59 -11.07 15.78 5.28 0.08 -10.99 16 15 N -0.72 -12.23 5.44 -66.41 -0.36 -12.59 16 16 C 0.13 2.35 6.16 -5.19 -0.03 2.32 16 17 C 0.43 9.76 7.85 -10.98 -0.09 9.67 16 18 O -0.60 -15.10 15.24 5.55 0.08 -15.01 16 19 N -0.55 -13.51 5.29 -10.96 -0.06 -13.57 16 20 C -0.30 -8.21 9.68 -14.93 -0.14 -8.36 16 21 H 0.11 2.95 7.16 -52.49 -0.38 2.58 16 22 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 23 N -0.89 -23.78 13.05 55.50 0.72 -23.05 16 24 Si 0.93 20.43 29.55 -169.99 -5.02 15.40 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 28 C 0.12 1.31 5.64 -3.71 -0.02 1.28 16 29 H 0.06 0.51 8.13 -51.93 -0.42 0.08 16 30 H 0.06 0.51 8.14 -51.92 -0.42 0.08 16 31 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.76 8.07 -51.93 -0.42 0.35 16 33 H 0.09 0.68 8.13 -51.93 -0.42 0.26 16 34 H 0.38 2.64 9.09 45.56 0.41 3.05 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 1.03 7.03 -51.93 -0.37 0.66 16 37 H 0.41 6.83 4.90 -40.82 -0.20 6.63 16 38 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.40 9.37 7.90 -40.82 -0.32 9.05 16 41 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 42 H 0.10 1.18 5.57 -51.93 -0.29 0.89 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 363.91 15.07 5.48 5.48 Total: -1.00 -33.92 363.91 -5.87 -39.79 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -4.89 Total: 17.24 kcal Atomic # 6 Polarization: 22.80 SS G_CDS: -0.25 Total: 22.55 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: -0.21 Total: -57.28 kcal Atomic # 8 Polarization: -42.21 SS G_CDS: -0.98 Total: -43.19 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.92 -5.87 -39.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592023619.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.942 kcal (2) G-P(sol) polarization free energy of solvation -33.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds