Wall clock time and date at job start Tue Mar 31 2020 06:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34227 * 116.99923 * 2 1 4 4 O 1.20826 * 120.00270 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00079 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.49861 * 300.00087 * 5 3 2 7 7 C 1.53036 * 109.49994 * 179.97438 * 5 3 2 8 8 C 1.53039 * 109.53970 * 178.72136 * 7 5 3 9 9 H 1.09001 * 109.52082 * 181.30375 * 8 7 5 10 10 O 1.42903 * 109.46781 * 301.36128 * 8 7 5 11 11 C 1.53189 * 109.34225 * 61.31332 * 8 7 5 12 12 N 1.46923 * 108.77541 * 305.38068 * 11 8 7 13 13 C 1.34773 * 120.63177 * 233.62761 * 12 11 8 14 14 O 1.21588 * 120.00000 * 354.94869 * 13 12 11 15 15 N 1.34782 * 119.99923 * 174.94361 * 13 12 11 16 16 C 1.46495 * 119.99975 * 185.07624 * 15 13 12 17 17 C 1.50701 * 109.47310 * 179.97438 * 16 15 13 18 18 O 1.21287 * 119.99610 * 359.97438 * 17 16 15 19 19 N 1.34775 * 119.99888 * 179.97438 * 17 16 15 20 20 C 1.37104 * 119.99683 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99969 * 0.02562 * 20 19 17 22 22 C 1.38952 * 119.99714 * 179.97438 * 20 19 17 23 23 N 1.31405 * 120.00453 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99583 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46616 * 90.00358 * 24 22 20 26 26 H 1.48496 * 109.47135 * 209.99939 * 24 22 20 27 27 H 1.48496 * 109.47538 * 330.00404 * 24 22 20 28 28 C 1.46928 * 118.73940 * 53.61166 * 12 11 8 29 29 H 1.08993 * 109.47082 * 59.99949 * 1 2 3 30 30 H 1.09002 * 109.47103 * 300.00210 * 1 2 3 31 31 H 1.08999 * 109.47072 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46180 * 298.70516 * 7 5 3 33 33 H 1.08997 * 109.46252 * 58.66374 * 7 5 3 34 34 H 0.96697 * 113.99981 * 179.85703 * 10 8 7 35 35 H 1.09008 * 109.58347 * 185.59638 * 11 8 7 36 36 H 1.08996 * 109.58392 * 65.17449 * 11 8 7 37 37 H 0.96997 * 119.99984 * 5.07809 * 15 13 12 38 38 H 1.09006 * 109.47281 * 299.99958 * 16 15 13 39 39 H 1.09006 * 109.47184 * 59.99612 * 16 15 13 40 40 H 0.96996 * 120.00244 * 0.02562 * 19 17 16 41 41 H 0.96994 * 120.00256 * 179.97438 * 23 22 20 42 42 H 1.08995 * 109.59089 * 186.60428 * 28 12 11 43 43 H 1.09000 * 109.70313 * 66.23942 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9563 0.7811 0.8907 7 6 4.0010 2.7422 -0.0002 8 6 5.5288 2.8236 0.0326 9 1 5.8376 3.8687 0.0554 10 8 6.0164 2.1567 1.1987 11 6 6.0998 2.1488 -1.2186 12 7 5.5701 0.7809 -1.3016 13 6 6.4029 -0.2719 -1.4216 14 8 7.5977 -0.0898 -1.5545 15 7 5.9113 -1.5265 -1.3943 16 6 6.8247 -2.6717 -1.4127 17 6 6.0281 -3.9504 -1.3747 18 8 4.8166 -3.9091 -1.3356 19 7 6.6620 -5.1397 -1.3842 20 6 5.9372 -6.3030 -1.3502 21 1 4.8583 -6.2663 -1.3163 22 6 6.5907 -7.5292 -1.3605 23 7 7.9033 -7.5740 -1.4034 24 14 5.6031 -9.1142 -1.3135 25 1 5.2955 -9.5470 -2.7004 26 1 6.3929 -10.1694 -0.6295 27 1 4.3360 -8.8863 -0.5735 28 6 4.1151 0.5825 -1.2510 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.6312 3.2301 -0.9021 33 1 3.5913 3.2428 0.8771 34 1 6.9795 2.1668 1.2837 35 1 7.1874 2.1161 -1.1520 36 1 5.8026 2.7103 -2.1043 37 1 4.9527 -1.6712 -1.3624 38 1 7.4243 -2.6436 -2.3225 39 1 7.4810 -2.6269 -0.5435 40 1 7.6309 -5.1727 -1.4151 41 1 8.3594 -8.4299 -1.4102 42 1 3.8930 -0.4836 -1.2058 43 1 3.6542 1.0146 -2.1393 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592023620.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:55 Heat of formation + Delta-G solvation = -189.713249 kcal Electronic energy + Delta-G solvation = -28883.736624 eV Core-core repulsion = 24543.681822 eV Total energy + Delta-G solvation = -4340.054802 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.151 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.14885 -40.18659 -38.62940 -37.89927 -36.71421 -35.65920 -34.47994 -33.68852 -32.85333 -31.37880 -30.76376 -28.07052 -27.62890 -25.53338 -24.60092 -24.25290 -21.85198 -20.52187 -19.72842 -19.67032 -18.59854 -17.95492 -17.75096 -17.27403 -16.76624 -16.71217 -15.97453 -15.63172 -15.47818 -15.05680 -14.81651 -14.49665 -14.44645 -14.23351 -14.08537 -13.66515 -13.56795 -13.38128 -13.32181 -12.97008 -12.35539 -12.26432 -12.06255 -11.87942 -11.64239 -11.62090 -11.47314 -11.21062 -11.11801 -10.99924 -10.68855 -10.45469 -10.43848 -10.30948 -9.98815 -9.62502 -8.98478 -8.61349 -8.50716 -8.08844 -6.50413 -3.92296 1.90390 2.38983 2.65838 3.12289 3.22739 3.27995 3.28887 3.76075 3.88653 3.94538 4.13703 4.22525 4.43015 4.48177 4.57584 4.78736 4.87089 4.89491 4.92632 4.98793 5.17551 5.18326 5.25038 5.33585 5.37969 5.39022 5.49085 5.69521 5.80416 5.90064 6.00780 6.08288 6.14273 6.30598 6.72464 6.92030 7.39447 7.47083 7.48433 7.93520 8.08749 8.46326 8.70508 9.05809 9.40685 9.88590 10.66542 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.013490 B = 0.003023 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.148239 B = 9260.959825 C =10966.764584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.351 6.351 3 C 0.469 3.531 4 O -0.508 6.508 5 C -0.092 4.092 6 H 0.126 0.874 7 C -0.095 4.095 8 C 0.091 3.909 9 H 0.074 0.926 10 O -0.559 6.559 11 C 0.095 3.905 12 N -0.622 5.622 13 C 0.714 3.286 14 O -0.594 6.594 15 N -0.723 5.723 16 C 0.127 3.873 17 C 0.429 3.571 18 O -0.597 6.597 19 N -0.549 5.549 20 C -0.304 4.304 21 H 0.105 0.895 22 C 0.026 3.974 23 N -0.895 5.895 24 Si 0.933 3.067 25 H -0.277 1.277 26 H -0.283 1.283 27 H -0.269 1.269 28 C 0.122 3.878 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.382 0.618 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.407 0.593 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.396 0.604 41 H 0.274 0.726 42 H 0.099 0.901 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.774 19.808 2.002 21.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.267 6.267 3 C 0.312 3.688 4 O -0.396 6.396 5 C -0.112 4.112 6 H 0.144 0.856 7 C -0.132 4.132 8 C 0.031 3.969 9 H 0.092 0.908 10 O -0.366 6.366 11 C -0.028 4.028 12 N -0.360 5.360 13 C 0.415 3.585 14 O -0.473 6.473 15 N -0.383 5.383 16 C -0.001 4.001 17 C 0.214 3.786 18 O -0.483 6.483 19 N -0.184 5.184 20 C -0.434 4.434 21 H 0.123 0.877 22 C -0.177 4.177 23 N -0.535 5.535 24 Si 0.759 3.241 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.193 1.193 28 C -0.003 4.003 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.123 0.877 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.230 0.770 35 H 0.119 0.881 36 H 0.093 0.907 37 H 0.247 0.753 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.230 0.770 41 H 0.084 0.916 42 H 0.117 0.883 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.424 19.912 2.030 21.348 hybrid contribution 0.028 -0.817 -0.064 0.820 sum -7.396 19.095 1.966 20.572 Atomic orbital electron populations 1.23315 0.76025 1.04137 1.02366 1.86582 1.23666 1.32900 1.83514 1.23607 0.91658 0.81517 0.72044 1.90656 1.67117 1.36405 1.45412 1.21390 0.87043 0.99792 1.03021 0.85635 1.21441 0.93454 0.93851 1.04480 1.22214 0.94022 0.95349 0.85306 0.90799 1.86505 1.27195 1.79543 1.43309 1.22248 1.01151 0.81544 0.97885 1.46935 1.05006 1.05677 1.78352 1.15662 0.84692 0.80402 0.77740 1.90890 1.13567 1.84689 1.58173 1.44974 1.11433 1.03361 1.78500 1.20810 0.91797 0.84356 1.03160 1.19751 0.88480 0.84819 0.85518 1.90493 1.13902 1.86689 1.57231 1.41780 1.09654 1.04313 1.62651 1.19728 0.93190 0.82323 1.48134 0.87674 1.25316 0.95822 0.99731 0.96836 1.69609 1.07162 1.27377 1.49364 0.85821 0.79335 0.80422 0.78494 1.20299 1.20825 1.19313 1.21519 0.80924 1.02034 0.95782 0.91842 0.91927 0.87708 0.89423 0.89870 0.77013 0.88060 0.90721 0.75299 0.89915 0.90017 0.77029 0.91609 0.88315 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.37 16 2 O -0.35 -4.04 10.50 -39.25 -0.41 -4.45 16 3 C 0.47 5.37 7.26 36.01 0.26 5.63 16 4 O -0.51 -6.62 15.73 -18.75 -0.29 -6.91 16 5 C -0.09 -0.95 2.64 -91.65 -0.24 -1.19 16 6 H 0.13 1.44 7.61 -51.93 -0.40 1.04 16 7 C -0.09 -0.82 4.21 -26.69 -0.11 -0.94 16 8 C 0.09 0.72 3.81 -26.61 -0.10 0.62 16 9 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 10 O -0.56 -5.38 12.51 -35.23 -0.44 -5.82 16 11 C 0.10 0.89 6.06 -3.71 -0.02 0.86 16 12 N -0.62 -7.54 2.91 -178.50 -0.52 -8.06 16 13 C 0.71 11.42 8.30 -86.92 -0.72 10.70 16 14 O -0.59 -11.07 15.79 5.29 0.08 -10.99 16 15 N -0.72 -12.23 5.44 -66.41 -0.36 -12.59 16 16 C 0.13 2.35 6.16 -5.20 -0.03 2.32 16 17 C 0.43 9.76 7.85 -10.99 -0.09 9.67 16 18 O -0.60 -15.10 15.24 5.55 0.08 -15.01 16 19 N -0.55 -13.51 5.29 -10.96 -0.06 -13.57 16 20 C -0.30 -8.21 9.68 -14.93 -0.14 -8.36 16 21 H 0.11 2.95 7.16 -52.49 -0.38 2.58 16 22 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 23 N -0.89 -23.78 13.05 55.50 0.72 -23.05 16 24 Si 0.93 20.42 29.55 -169.99 -5.02 15.40 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 28 C 0.12 1.30 5.65 -3.71 -0.02 1.28 16 29 H 0.06 0.51 8.13 -51.93 -0.42 0.08 16 30 H 0.06 0.51 8.13 -51.93 -0.42 0.08 16 31 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 0.68 8.13 -51.93 -0.42 0.26 16 33 H 0.08 0.77 8.07 -51.93 -0.42 0.35 16 34 H 0.38 2.64 9.08 45.56 0.41 3.05 16 35 H 0.10 1.03 7.04 -51.92 -0.37 0.66 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.41 6.82 4.89 -40.82 -0.20 6.62 16 38 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.40 9.37 7.90 -40.82 -0.32 9.05 16 41 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 42 H 0.10 1.18 5.57 -51.93 -0.29 0.89 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 363.86 15.07 5.48 5.48 Total: -1.00 -33.91 363.86 -5.88 -39.79 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -4.89 Total: 17.24 kcal Atomic # 6 Polarization: 22.80 SS G_CDS: -0.25 Total: 22.55 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: -0.22 Total: -57.27 kcal Atomic # 8 Polarization: -42.21 SS G_CDS: -0.98 Total: -43.19 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.91 -5.88 -39.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592023620.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.922 kcal (2) G-P(sol) polarization free energy of solvation -33.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds