Wall clock time and date at job start Tue Mar 31 2020 04:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47188 * 2 1 4 4 C 1.36879 * 126.40471 * 265.02714 * 3 2 1 5 5 C 1.34665 * 106.82338 * 179.97438 * 4 3 2 6 6 S 1.76203 * 125.99143 * 180.02562 * 5 4 3 7 7 O 1.42097 * 106.40032 * 203.54081 * 6 5 4 8 8 O 1.42106 * 106.39882 * 336.45652 * 6 5 4 9 9 N 1.65593 * 107.22157 * 89.99639 * 6 5 4 10 10 C 1.47427 * 125.65010 * 90.02201 * 9 6 5 11 11 C 1.54908 * 104.83479 * 204.09387 * 10 9 6 12 12 C 1.55151 * 101.58181 * 322.99169 * 11 10 9 13 13 O 1.42901 * 110.72265 * 276.96050 * 12 11 10 14 14 C 1.50702 * 110.71963 * 153.86451 * 12 11 10 15 15 H 1.08004 * 119.99830 * 241.45403 * 14 12 11 16 16 C 1.37875 * 119.99753 * 61.45524 * 14 12 11 17 17 N 1.31509 * 120.00352 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 119.99739 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47019 * 60.00293 * 18 16 14 20 20 H 1.48505 * 109.47014 * 179.97438 * 18 16 14 21 21 H 1.48490 * 109.47543 * 299.99933 * 18 16 14 22 22 C 1.47020 * 125.64867 * 269.72230 * 9 6 5 23 23 N 1.34125 * 108.01933 * 359.97438 * 5 4 3 24 24 C 1.30504 * 109.25516 * 359.72770 * 23 5 4 25 25 C 1.50700 * 125.64625 * 180.29285 * 24 23 5 26 26 H 1.09002 * 109.47153 * 299.99573 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99745 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00399 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00427 * 2 1 3 31 31 H 1.08004 * 126.58802 * 359.96327 * 4 3 2 32 32 H 1.08999 * 110.36713 * 322.93632 * 10 9 6 33 33 H 1.09003 * 110.36207 * 85.25655 * 10 9 6 34 34 H 1.08995 * 110.99912 * 81.06701 * 11 10 9 35 35 H 1.08995 * 111.00127 * 204.87670 * 11 10 9 36 36 H 0.96701 * 114.00048 * 298.54724 * 13 12 11 37 37 H 0.96998 * 120.00129 * 180.02562 * 17 16 14 38 38 H 1.09000 * 109.88260 * 298.38893 * 22 9 6 39 39 H 1.08993 * 109.89076 * 59.55422 * 22 9 6 40 40 H 1.09007 * 109.46945 * 270.16894 * 25 24 23 41 41 H 1.08989 * 109.47587 * 30.17613 * 25 24 23 42 42 H 1.09000 * 109.46751 * 150.17736 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3791 2.1152 -1.0975 5 6 2.7647 3.3247 -0.6479 6 16 3.3297 4.6665 -1.6405 7 8 4.1209 5.4874 -0.7924 8 8 3.8188 4.0954 -2.8463 9 7 2.0010 5.5643 -2.0535 10 6 1.4566 6.6976 -1.2837 11 6 -0.0349 6.7763 -1.6949 12 6 0.0376 6.4118 -3.2012 13 8 0.3732 7.5596 -3.9836 14 6 -1.2641 5.8128 -3.6680 15 1 -1.2871 4.8037 -4.0523 16 6 -2.4256 6.5530 -3.6045 17 7 -2.3976 7.7816 -3.1361 18 14 -4.0389 5.8108 -4.1839 19 1 -4.3420 4.5981 -3.3821 20 1 -5.1304 6.8030 -4.0117 21 1 -3.9272 5.4410 -5.6176 22 6 1.1725 5.3671 -3.2520 23 7 2.6420 3.3293 0.6877 24 6 2.1897 2.1705 1.0823 25 6 1.9091 1.7770 2.5097 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 2.3588 1.7874 -2.1264 32 1 1.5458 6.5074 -0.2142 33 1 1.9728 7.6199 -1.5502 34 1 -0.6306 6.0479 -1.1448 35 1 -0.4261 7.7839 -1.5544 36 1 -0.2717 8.2778 -3.9250 37 1 -3.2148 8.3022 -3.0911 38 1 1.7754 5.5152 -4.1479 39 1 0.7495 4.3626 -3.2492 40 1 2.8061 1.3409 2.9494 41 1 1.6173 2.6593 3.0792 42 1 1.1009 1.0460 2.5329 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592078019.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:22 Heat of formation + Delta-G solvation = -62.631597 kcal Electronic energy + Delta-G solvation = -27277.605328 eV Core-core repulsion = 23385.814071 eV Total energy + Delta-G solvation = -3891.791257 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.33166 -37.98141 -36.75714 -35.40580 -35.32996 -34.22128 -32.17791 -32.06475 -30.43382 -29.05114 -28.22220 -27.35741 -24.80234 -24.23500 -22.25657 -21.42466 -20.14255 -19.72073 -18.57166 -17.71629 -17.32879 -16.77757 -16.05902 -15.80199 -15.29420 -14.93679 -14.79358 -14.50210 -14.24592 -14.08309 -13.59429 -13.40645 -13.24958 -12.98227 -12.89371 -12.65770 -12.36519 -12.10462 -11.97416 -11.79408 -11.68378 -11.66788 -11.54391 -11.30601 -11.27047 -11.01545 -10.80776 -10.51641 -10.35315 -10.12771 -10.05733 -9.98633 -9.29090 -8.80943 -8.64375 -8.32479 -8.13195 -6.25762 -4.33658 0.80124 1.60409 2.43061 2.58376 3.19754 3.25683 3.27730 3.57793 4.12587 4.18159 4.25751 4.29396 4.41134 4.51040 4.72594 4.82087 4.98205 5.03379 5.18114 5.21607 5.24394 5.38538 5.52646 5.56830 5.69960 5.88493 5.93222 6.03615 6.16980 6.22243 6.35565 6.50779 6.69905 6.88574 6.90823 7.03653 7.12206 7.41307 7.44813 7.74939 7.75844 8.06953 8.67463 9.34040 9.45758 10.81653 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.011827 B = 0.004732 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.973858 B = 5915.631295 C = 7304.584854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.095 3.905 3 N -0.452 5.452 4 C 0.067 3.933 5 C -0.554 4.554 6 S 2.739 3.261 7 O -0.950 6.950 8 O -0.961 6.961 9 N -1.002 6.002 10 C 0.121 3.879 11 C -0.130 4.130 12 C 0.251 3.749 13 O -0.584 6.584 14 C -0.535 4.535 15 H 0.062 0.938 16 C 0.073 3.927 17 N -0.894 5.894 18 Si 0.901 3.099 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.136 3.864 23 N -0.410 5.410 24 C 0.202 3.798 25 C -0.068 4.068 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.193 0.807 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.381 0.619 37 H 0.268 0.732 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.277 -14.800 8.780 17.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.027 4.027 3 N -0.133 5.133 4 C -0.073 4.073 5 C -0.763 4.763 6 S 2.826 3.174 7 O -0.940 6.940 8 O -0.951 6.951 9 N -0.842 5.842 10 C -0.003 4.003 11 C -0.170 4.170 12 C 0.209 3.791 13 O -0.393 6.393 14 C -0.574 4.574 15 H 0.080 0.920 16 C -0.130 4.130 17 N -0.533 5.533 18 Si 0.728 3.272 19 H -0.203 1.203 20 H -0.211 1.211 21 H -0.200 1.200 22 C 0.011 3.989 23 N -0.128 5.128 24 C -0.063 4.063 25 C -0.126 4.126 26 H 0.085 0.915 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.210 0.790 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.231 0.769 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.113 0.887 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.762 -14.412 9.012 17.948 hybrid contribution -2.269 -1.324 -0.322 2.647 sum 3.493 -15.736 8.690 18.313 Atomic orbital electron populations 1.22201 0.93396 1.03494 1.04008 1.21999 0.96251 0.79449 1.05026 1.45777 1.47649 1.12887 1.06991 1.22674 0.99691 0.91565 0.93414 1.33753 1.23123 1.16285 1.03176 1.00638 0.72103 0.72203 0.72495 1.93532 1.65546 1.66321 1.68617 1.93558 1.77628 1.79641 1.44288 1.58438 1.48303 1.43718 1.33770 1.22140 0.96690 0.87550 0.93946 1.23272 0.91385 1.02879 0.99466 1.19447 0.89667 0.83038 0.86908 1.86131 1.52744 1.28919 1.71498 1.21487 0.91984 1.00582 1.43346 0.91986 1.24974 0.99219 0.94849 0.93933 1.69692 1.29059 1.09066 1.45458 0.86520 0.82401 0.78816 0.79418 1.20334 1.21122 1.20012 1.21830 0.92276 0.99524 0.85234 1.70287 1.15005 1.19103 1.08388 1.23640 1.03465 0.87658 0.91569 1.20223 1.02344 1.03191 0.86837 0.91515 0.90187 0.91162 0.88617 0.88416 0.79044 0.92024 0.91756 0.91822 0.89591 0.76853 0.92182 0.91517 0.91737 0.90048 0.88704 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 10.24 37.16 0.38 -0.77 16 2 C 0.09 0.64 6.39 -4.04 -0.03 0.62 16 3 N -0.45 -5.29 2.75 -113.91 -0.31 -5.61 16 4 C 0.07 0.95 11.31 -16.56 -0.19 0.76 16 5 C -0.55 -9.61 7.13 -17.81 -0.13 -9.74 16 6 S 2.74 52.82 6.09 -107.50 -0.66 52.17 16 7 O -0.95 -20.53 17.60 -57.17 -1.01 -21.53 16 8 O -0.96 -19.26 17.42 -57.17 -1.00 -20.26 16 9 N -1.00 -20.34 3.70 -111.41 -0.41 -20.75 16 10 C 0.12 2.47 6.98 -2.53 -0.02 2.46 16 11 C -0.13 -2.92 5.47 -24.59 -0.13 -3.06 16 12 C 0.25 6.05 0.85 -89.93 -0.08 5.97 16 13 O -0.58 -14.74 13.07 -35.23 -0.46 -15.20 16 14 C -0.54 -13.75 8.22 -34.44 -0.28 -14.03 16 15 H 0.06 1.56 7.58 -52.48 -0.40 1.16 16 16 C 0.07 1.86 5.28 -17.82 -0.09 1.76 16 17 N -0.89 -22.91 10.67 55.43 0.59 -22.32 16 18 Si 0.90 19.93 29.54 -169.99 -5.02 14.91 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 22 C 0.14 2.95 6.35 -3.06 -0.02 2.93 16 23 N -0.41 -7.16 11.25 -10.02 -0.11 -7.27 16 24 C 0.20 2.70 7.90 -155.41 -1.23 1.47 16 25 C -0.07 -0.57 10.04 36.01 0.36 -0.21 16 26 H 0.07 0.48 7.63 -51.93 -0.40 0.08 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.10 0.44 7.94 -51.93 -0.41 0.03 16 30 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.19 2.18 8.06 -52.48 -0.42 1.75 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.06 1.46 8.04 -51.93 -0.42 1.04 16 35 H 0.09 2.00 7.54 -51.93 -0.39 1.61 16 36 H 0.38 9.60 7.46 45.56 0.34 9.94 16 37 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 38 H 0.07 1.46 8.07 -51.93 -0.42 1.04 16 39 H 0.06 1.30 7.66 -51.93 -0.40 0.90 16 40 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 41 H 0.09 0.82 8.14 -51.94 -0.42 0.40 16 42 H 0.07 0.45 7.33 -51.93 -0.38 0.07 16 LS Contribution 362.16 15.07 5.46 5.46 Total: -1.00 -33.51 362.16 -9.77 -43.28 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -5.39 Total: 8.96 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -1.45 Total: -11.84 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: -0.25 Total: -55.95 kcal Atomic # 8 Polarization: -54.53 SS G_CDS: -2.46 Total: -56.99 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Atomic # 16 Polarization: 52.82 SS G_CDS: -0.66 Total: 52.17 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.51 -9.77 -43.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592078019.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.349 kcal (2) G-P(sol) polarization free energy of solvation -33.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds