Wall clock time and date at job start Tue Mar 31 2020 04:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46507 * 109.47505 * 2 1 4 4 C 1.36878 * 126.39829 * 265.02999 * 3 2 1 5 5 C 1.34666 * 106.81597 * 180.23772 * 4 3 2 6 6 S 1.76204 * 125.98706 * 179.76152 * 5 4 3 7 7 O 1.42103 * 106.39976 * 203.53742 * 6 5 4 8 8 O 1.42098 * 106.40236 * 336.45311 * 6 5 4 9 9 N 1.65591 * 107.21957 * 89.99785 * 6 5 4 10 10 C 1.47027 * 125.65211 * 90.02483 * 9 6 5 11 11 C 1.54319 * 107.27194 * 181.02271 * 10 9 6 12 12 C 1.55155 * 102.94433 * 22.19448 * 11 10 9 13 13 O 1.42901 * 111.00596 * 82.56969 * 12 11 10 14 14 C 1.50704 * 111.00357 * 206.38733 * 12 11 10 15 15 H 1.07995 * 120.00262 * 118.54311 * 14 12 11 16 16 C 1.37878 * 119.99703 * 298.54595 * 14 12 11 17 17 N 1.31516 * 120.00188 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 119.99834 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47489 * 89.99624 * 18 16 14 20 20 H 1.48506 * 109.47097 * 209.99544 * 18 16 14 21 21 H 1.48493 * 109.47269 * 329.99696 * 18 16 14 22 22 C 1.47426 * 125.64926 * 269.71341 * 9 6 5 23 23 N 1.34129 * 108.02165 * 359.60606 * 5 4 3 24 24 C 1.30498 * 109.25671 * 0.40230 * 23 5 4 25 25 C 1.50696 * 125.65003 * 179.77584 * 24 23 5 26 26 H 1.09001 * 109.46832 * 59.99749 * 1 2 3 27 27 H 1.08999 * 109.47187 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47324 * 300.00335 * 1 2 3 29 29 H 1.09000 * 109.47534 * 240.00174 * 2 1 3 30 30 H 1.09008 * 109.47437 * 119.99631 * 2 1 3 31 31 H 1.08002 * 126.58785 * 359.96564 * 4 3 2 32 32 H 1.09002 * 109.87786 * 300.44139 * 10 9 6 33 33 H 1.08993 * 109.88179 * 61.60126 * 10 9 6 34 34 H 1.09005 * 110.71725 * 140.55649 * 11 10 9 35 35 H 1.09001 * 110.71864 * 263.64589 * 11 10 9 36 36 H 0.96695 * 113.99847 * 61.45960 * 13 12 11 37 37 H 0.96993 * 119.99961 * 180.02562 * 17 16 14 38 38 H 1.09002 * 110.37040 * 274.74912 * 22 9 6 39 39 H 1.09007 * 110.36118 * 37.07314 * 22 9 6 40 40 H 1.09004 * 109.47222 * 269.97055 * 25 24 23 41 41 H 1.08996 * 109.47237 * 29.97295 * 25 24 23 42 42 H 1.09004 * 109.47461 * 149.97686 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3792 2.1152 -1.0976 5 6 2.7703 3.3226 -0.6475 6 16 3.3440 4.6612 -1.6393 7 8 4.1382 5.4782 -0.7901 8 8 3.8322 4.0875 -2.8442 9 7 2.0208 5.5660 -2.0546 10 6 1.4826 6.6992 -1.2880 11 6 0.2373 7.2120 -2.0414 12 6 -0.1866 5.9834 -2.8889 13 8 -0.9656 5.0703 -2.1133 14 6 -0.9341 6.4119 -4.1253 15 1 -0.5392 6.1788 -5.1030 16 6 -2.1222 7.1016 -4.0081 17 7 -2.6033 7.3851 -2.8174 18 14 -3.0491 7.6322 -5.5406 19 1 -3.9972 6.5618 -5.9413 20 1 -3.8026 8.8799 -5.2563 21 1 -2.0845 7.8769 -6.6428 22 6 1.1909 5.3726 -3.2577 23 7 2.6434 3.3288 0.6878 24 6 2.1965 2.1681 1.0830 25 6 1.9240 1.7718 2.5111 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 2.3586 1.7873 -2.1264 32 1 1.2012 6.3698 -0.2877 33 1 2.2289 7.4909 -1.2234 34 1 -0.5510 7.4876 -1.3408 35 1 0.4943 8.0557 -2.6819 36 1 -1.7922 5.4442 -1.7787 37 1 -3.4393 7.8700 -2.7351 38 1 1.6264 5.8983 -4.1075 39 1 1.0872 4.3105 -3.4802 40 1 2.8234 1.3347 2.9448 41 1 1.6358 2.6531 3.0841 42 1 1.1158 1.0409 2.5375 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592078020.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:26 Heat of formation + Delta-G solvation = -62.827226 kcal Electronic energy + Delta-G solvation = -27380.423039 eV Core-core repulsion = 23488.623299 eV Total energy + Delta-G solvation = -3891.799740 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.24227 -37.95995 -36.73695 -35.38792 -35.24949 -34.18638 -32.18796 -31.99078 -30.35297 -29.12075 -28.19454 -27.28114 -24.80912 -24.15872 -22.17509 -21.34454 -20.07158 -19.74463 -18.53939 -17.76046 -17.15076 -16.81437 -16.03703 -15.70042 -15.27945 -14.92492 -14.76695 -14.41164 -14.17842 -14.05561 -13.52761 -13.35507 -13.29789 -12.93787 -12.77498 -12.60021 -12.35326 -12.28025 -11.85957 -11.74209 -11.71473 -11.66879 -11.54952 -11.28687 -11.22466 -10.98871 -10.72544 -10.47570 -10.37865 -10.05218 -9.94594 -9.90124 -9.35005 -8.73331 -8.65038 -8.25725 -8.15805 -6.25079 -4.33140 0.85151 1.69684 2.50986 2.66808 3.21190 3.28811 3.32261 3.60088 4.19085 4.22617 4.28332 4.35124 4.48393 4.58918 4.79096 4.87922 5.01212 5.05751 5.25325 5.29204 5.31135 5.45057 5.50779 5.63064 5.78942 5.92481 6.01602 6.08403 6.11426 6.29946 6.31549 6.45043 6.69305 6.89794 6.98337 7.03873 7.15601 7.40194 7.45207 7.77126 7.83296 8.07642 8.69483 9.33875 9.42243 10.82141 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.014218 B = 0.004289 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.855331 B = 6526.280399 C = 7457.483660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.095 3.905 3 N -0.451 5.451 4 C 0.070 3.930 5 C -0.551 4.551 6 S 2.740 3.260 7 O -0.953 6.953 8 O -0.963 6.963 9 N -1.000 6.000 10 C 0.124 3.876 11 C -0.131 4.131 12 C 0.250 3.750 13 O -0.584 6.584 14 C -0.536 4.536 15 H 0.065 0.935 16 C 0.073 3.927 17 N -0.895 5.895 18 Si 0.901 3.099 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.272 1.272 22 C 0.137 3.863 23 N -0.410 5.410 24 C 0.202 3.798 25 C -0.067 4.067 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.191 0.809 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.379 0.621 37 H 0.267 0.733 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.034 -13.522 7.579 16.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.027 4.027 3 N -0.132 5.132 4 C -0.070 4.070 5 C -0.761 4.761 6 S 2.826 3.174 7 O -0.943 6.943 8 O -0.953 6.953 9 N -0.840 5.840 10 C -0.001 4.001 11 C -0.171 4.171 12 C 0.209 3.791 13 O -0.392 6.392 14 C -0.574 4.574 15 H 0.083 0.917 16 C -0.130 4.130 17 N -0.534 5.534 18 Si 0.729 3.271 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.197 1.197 22 C 0.012 3.988 23 N -0.128 5.128 24 C -0.064 4.064 25 C -0.125 4.125 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.208 0.792 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.229 0.771 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.112 0.888 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.466 -13.227 7.882 16.700 hybrid contribution -1.892 -0.514 -0.861 2.141 sum 4.574 -13.741 7.021 16.094 Atomic orbital electron populations 1.22190 0.93365 1.03359 1.04126 1.21988 0.96307 0.79488 1.04889 1.45746 1.47638 1.12925 1.06933 1.22624 0.99410 0.91666 0.93330 1.33652 1.23124 1.16165 1.03169 1.00599 0.72120 0.72191 0.72462 1.93525 1.65657 1.66571 1.68514 1.93556 1.77731 1.79544 1.44481 1.58413 1.48471 1.43525 1.33569 1.21826 0.96848 0.86687 0.94745 1.23150 0.94472 1.00040 0.99466 1.19658 0.86132 0.84464 0.88850 1.86093 1.37517 1.43001 1.72583 1.21492 1.06847 1.36255 0.92829 0.91693 1.24982 0.96980 0.94556 0.96440 1.69727 1.20945 1.40553 1.22146 0.86452 0.79772 0.78001 0.82922 1.20568 1.21130 1.19679 1.22190 0.90876 1.00457 0.85266 1.70266 1.15159 1.18904 1.08422 1.23601 1.03635 0.87640 0.91506 1.20210 1.02301 1.03129 0.86882 0.91055 0.90290 0.91540 0.88510 0.88696 0.79212 0.92643 0.92445 0.89815 0.91414 0.77102 0.92315 0.90511 0.91862 0.90121 0.88755 0.90747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 10.24 37.15 0.38 -0.92 16 2 C 0.10 0.72 6.40 -4.04 -0.03 0.69 16 3 N -0.45 -5.67 2.75 -113.90 -0.31 -5.99 16 4 C 0.07 1.06 11.31 -16.56 -0.19 0.87 16 5 C -0.55 -10.00 7.13 -17.81 -0.13 -10.13 16 6 S 2.74 53.42 6.09 -107.50 -0.66 52.76 16 7 O -0.95 -20.64 17.60 -57.17 -1.01 -21.64 16 8 O -0.96 -19.28 17.42 -57.17 -1.00 -20.27 16 9 N -1.00 -20.32 3.70 -111.29 -0.41 -20.73 16 10 C 0.12 2.52 6.99 -3.06 -0.02 2.50 16 11 C -0.13 -2.93 5.37 -24.90 -0.13 -3.07 16 12 C 0.25 5.95 0.87 -89.50 -0.08 5.87 16 13 O -0.58 -14.38 13.17 -35.23 -0.46 -14.85 16 14 C -0.54 -13.70 8.27 -34.44 -0.28 -13.99 16 15 H 0.06 1.64 7.79 -52.49 -0.41 1.23 16 16 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 17 N -0.89 -22.91 10.76 55.43 0.60 -22.31 16 18 Si 0.90 19.98 29.54 -169.99 -5.02 14.96 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 C 0.14 2.92 6.17 -2.41 -0.01 2.91 16 23 N -0.41 -7.48 11.25 -10.02 -0.11 -7.59 16 24 C 0.20 2.86 7.90 -155.42 -1.23 1.63 16 25 C -0.07 -0.61 10.04 36.00 0.36 -0.25 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.54 7.67 -51.93 -0.40 0.14 16 29 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.49 7.92 -51.92 -0.41 0.08 16 31 H 0.19 2.35 8.06 -52.49 -0.42 1.93 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.08 1.95 7.55 -51.93 -0.39 1.56 16 35 H 0.07 1.52 8.04 -51.93 -0.42 1.10 16 36 H 0.38 9.48 7.56 45.56 0.34 9.82 16 37 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 38 H 0.08 1.58 8.04 -51.93 -0.42 1.16 16 39 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.07 0.50 7.36 -51.93 -0.38 0.11 16 LS Contribution 362.99 15.07 5.47 5.47 Total: -1.00 -33.24 362.99 -9.79 -43.03 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -5.42 Total: 9.28 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -1.45 Total: -12.12 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: -0.24 Total: -56.62 kcal Atomic # 8 Polarization: -54.30 SS G_CDS: -2.47 Total: -56.77 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 16 Polarization: 53.42 SS G_CDS: -0.66 Total: 52.76 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.24 -9.79 -43.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592078020.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.797 kcal (2) G-P(sol) polarization free energy of solvation -33.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds