Wall clock time and date at job start Tue Mar 31 2020 06:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00345 * 2 1 4 4 H 1.48504 * 109.47538 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.46864 * 299.99553 * 3 2 1 6 6 H 1.48499 * 109.47368 * 59.99440 * 3 2 1 7 7 C 1.37883 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00116 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99811 * 0.02562 * 7 2 1 10 10 O 1.42906 * 110.28620 * 299.32730 * 9 7 2 11 11 C 1.54257 * 110.32628 * 61.45328 * 9 7 2 12 12 C 1.54381 * 105.14978 * 118.84329 * 11 9 7 13 13 N 1.48720 * 104.51692 * 336.27274 * 12 11 9 14 14 C 1.46900 * 111.01831 * 158.96284 * 13 12 11 15 15 C 1.52999 * 109.46697 * 74.48907 * 14 13 12 16 16 N 1.46506 * 109.47032 * 179.97438 * 15 14 13 17 17 C 1.35861 * 119.69410 * 90.00507 * 16 15 14 18 18 N 1.29829 * 123.36401 * 180.02562 * 17 16 15 19 19 C 1.35654 * 121.61779 * 359.97438 * 18 17 16 20 20 C 1.39645 * 121.64327 * 180.02562 * 19 18 17 21 21 C 1.37670 * 119.68562 * 179.97438 * 20 19 18 22 22 C 1.38888 * 120.81559 * 359.97438 * 21 20 19 23 23 C 1.37757 * 120.57212 * 0.04187 * 22 21 20 24 24 C 1.39343 * 119.51934 * 359.95840 * 23 22 21 25 25 C 1.35340 * 119.69857 * 269.73191 * 16 15 14 26 26 O 1.21720 * 121.29978 * 359.97438 * 25 16 15 27 27 C 1.48567 * 104.28820 * 39.36098 * 13 12 11 28 28 H 0.97002 * 119.99478 * 0.02562 * 1 2 3 29 29 H 0.96695 * 113.99929 * 60.67881 * 10 9 7 30 30 H 1.09002 * 110.32715 * 237.79384 * 11 9 7 31 31 H 1.08998 * 110.32251 * 359.89910 * 11 9 7 32 32 H 1.09004 * 110.40867 * 94.98012 * 12 11 9 33 33 H 1.08996 * 110.41187 * 217.42234 * 12 11 9 34 34 H 1.08997 * 109.47620 * 194.49319 * 14 13 12 35 35 H 1.08999 * 109.47148 * 314.49752 * 14 13 12 36 36 H 1.09001 * 109.47808 * 300.00257 * 15 14 13 37 37 H 1.08997 * 109.47144 * 60.00574 * 15 14 13 38 38 H 1.08000 * 118.31736 * 359.97438 * 17 16 15 39 39 H 1.07998 * 120.16126 * 359.95321 * 20 19 18 40 40 H 1.07995 * 119.59195 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.71399 * 180.02562 * 22 21 20 42 42 H 1.08008 * 120.24538 * 179.97438 * 23 22 21 43 43 H 1.08999 * 110.41133 * 201.79165 * 27 13 12 44 44 H 1.09001 * 110.41003 * 79.35561 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2127 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.4342 -2.5997 1.1689 11 6 0.3849 -2.6178 -1.2704 12 6 0.9178 -3.8657 -2.0067 13 7 2.3140 -4.0191 -1.5179 14 6 2.7937 -5.3933 -1.7165 15 6 3.0992 -5.6176 -3.1988 16 7 3.5783 -6.9879 -3.3967 17 6 2.6888 -7.9802 -3.6615 18 7 3.0343 -9.2176 -3.8484 19 6 4.3315 -9.6102 -3.7911 20 6 4.7038 -10.9410 -3.9925 21 6 6.0325 -11.2948 -3.9257 22 6 7.0096 -10.3440 -3.6608 23 6 6.6672 -9.0251 -3.4583 24 6 5.3278 -8.6460 -3.5216 25 6 4.9033 -7.2527 -3.3196 26 8 5.7116 -6.3726 -3.0885 27 6 2.2350 -3.6865 -0.0722 28 1 -0.4849 0.8401 -0.0004 29 1 -0.2327 -1.9035 1.2436 30 1 -0.6629 -2.7545 -1.0032 31 1 0.5035 -1.7313 -1.8934 32 1 0.3255 -4.7428 -1.7457 33 1 0.9060 -3.7050 -3.0847 34 1 3.6996 -5.5501 -1.1310 35 1 2.0260 -6.0964 -1.3934 36 1 2.1933 -5.4609 -3.7843 37 1 3.8669 -4.9146 -3.5219 38 1 1.6405 -7.7267 -3.7188 39 1 3.9529 -11.6891 -4.1993 40 1 6.3187 -12.3245 -4.0813 41 1 8.0468 -10.6412 -3.6128 42 1 7.4313 -8.2901 -3.2522 43 1 3.2146 -3.3920 0.3043 44 1 1.8492 -4.5352 0.4926 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592150811.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:21 Heat of formation + Delta-G solvation = -21.348180 kcal Electronic energy + Delta-G solvation = -27532.536425 eV Core-core repulsion = 23642.924494 eV Total energy + Delta-G solvation = -3889.611931 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.80102 -38.97020 -38.34981 -37.64953 -35.45467 -34.26900 -32.11352 -31.76172 -30.76736 -30.23496 -28.31629 -27.50340 -25.06471 -24.91266 -24.00128 -22.44505 -22.17939 -20.33850 -19.52591 -19.13833 -18.85811 -17.35923 -17.04748 -16.30576 -15.80830 -15.44202 -15.27654 -14.92656 -14.90214 -14.68300 -14.23687 -14.11574 -14.01234 -13.78910 -13.52460 -13.18345 -12.77661 -12.43110 -12.28662 -12.18904 -12.08593 -11.95828 -11.51639 -11.20426 -11.14256 -10.85823 -10.58535 -10.49863 -10.40198 -10.32520 -10.18880 -10.16536 -9.92768 -9.44102 -9.08210 -8.58222 -8.31859 -8.15990 -7.98726 -6.17806 -4.23017 0.26989 0.55024 1.95876 2.22025 2.54413 3.24878 3.33542 3.39555 3.71304 3.76278 3.98877 4.29262 4.35679 4.43553 4.56112 4.68744 4.80666 4.90928 4.98029 5.03602 5.11774 5.21479 5.37088 5.53967 5.59837 5.64221 5.76912 5.79405 5.88972 5.91836 6.02335 6.06223 6.09106 6.13719 6.28157 6.37096 6.43810 6.50618 6.81690 6.96925 7.14169 7.44862 7.52161 7.58054 7.60921 7.61225 7.84134 8.19869 8.80175 9.40717 9.49818 10.89752 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.025730 B = 0.002440 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.969678 B =11471.149523 C =12025.138350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.065 3.935 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.063 0.937 9 C 0.249 3.751 10 O -0.595 6.595 11 C -0.121 4.121 12 C 0.028 3.972 13 N -0.496 5.496 14 C 0.033 3.967 15 C 0.100 3.900 16 N -0.544 5.544 17 C 0.383 3.617 18 N -0.532 5.532 19 C 0.154 3.846 20 C -0.114 4.114 21 C -0.076 4.076 22 C -0.143 4.143 23 C -0.041 4.041 24 C -0.197 4.197 25 C 0.544 3.456 26 O -0.500 6.500 27 C 0.056 3.944 28 H 0.265 0.735 29 H 0.383 0.617 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.031 0.969 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.036 0.964 36 H 0.096 0.904 37 H 0.110 0.890 38 H 0.201 0.799 39 H 0.138 0.862 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.137 0.863 43 H 0.079 0.921 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.958 -20.123 -9.747 23.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.136 4.136 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.081 0.919 9 C 0.209 3.791 10 O -0.404 6.404 11 C -0.159 4.159 12 C -0.100 4.100 13 N -0.221 5.221 14 C -0.097 4.097 15 C -0.023 4.023 16 N -0.266 5.266 17 C 0.096 3.904 18 N -0.253 5.253 19 C 0.045 3.955 20 C -0.133 4.133 21 C -0.095 4.095 22 C -0.162 4.162 23 C -0.060 4.060 24 C -0.203 4.203 25 C 0.337 3.663 26 O -0.373 6.373 27 C -0.072 4.072 28 H 0.075 0.925 29 H 0.233 0.767 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.049 0.951 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.054 0.946 36 H 0.115 0.885 37 H 0.129 0.871 38 H 0.217 0.783 39 H 0.156 0.844 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.155 0.845 43 H 0.097 0.903 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 6.676 -20.320 -9.941 23.586 hybrid contribution -0.026 1.435 0.418 1.495 sum 6.650 -18.885 -9.523 22.171 Atomic orbital electron populations 1.69700 1.05891 1.27206 1.51357 1.25008 0.94998 0.99447 0.94150 0.86416 0.80275 0.83081 0.77505 1.19642 1.20981 1.21017 1.21681 0.93633 0.90295 1.49956 0.91883 1.19251 0.86415 0.91506 0.81946 1.86083 1.52122 1.55778 1.46406 1.22851 0.98326 0.95476 0.99271 1.23291 0.88280 0.98784 0.99646 1.65245 1.21583 1.19453 1.15809 1.22503 1.00726 0.91637 0.94852 1.21997 1.02204 0.79712 0.98341 1.46745 1.07986 1.11683 1.60191 1.24830 0.96408 0.82908 0.86286 1.68687 1.17747 1.14265 1.24559 1.18850 0.87734 0.94004 0.94936 1.20852 0.96480 0.93963 1.02023 1.21292 0.92418 0.99885 0.95922 1.21182 1.00064 0.92643 1.02265 1.21050 0.94314 0.96592 0.94045 1.20638 0.96132 0.92728 1.10798 1.18450 0.81518 0.89060 0.77318 1.90904 1.51676 1.48111 1.46654 1.22985 1.00675 0.97431 0.86096 0.92523 0.76653 0.92958 0.90477 0.95105 0.91367 0.90592 0.94562 0.88538 0.87146 0.78293 0.84397 0.84976 0.85037 0.84470 0.90310 0.94999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.85 10.81 55.43 0.60 -23.25 16 2 C 0.07 1.72 5.02 -17.82 -0.09 1.63 16 3 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.52 -13.84 8.10 -34.44 -0.28 -14.12 16 8 H 0.06 1.72 7.53 -52.49 -0.40 1.33 16 9 C 0.25 6.07 1.05 -90.39 -0.10 5.97 16 10 O -0.59 -15.27 12.94 -35.23 -0.46 -15.73 16 11 C -0.12 -2.67 5.55 -25.35 -0.14 -2.81 16 12 C 0.03 0.49 5.93 -2.09 -0.01 0.47 16 13 N -0.50 -9.10 5.34 -229.83 -1.23 -10.33 16 14 C 0.03 0.48 5.16 -3.82 -0.02 0.46 16 15 C 0.10 1.20 5.48 -4.04 -0.02 1.18 16 16 N -0.54 -6.38 2.61 -118.86 -0.31 -6.69 16 17 C 0.38 3.68 11.41 -90.18 -1.03 2.65 16 18 N -0.53 -5.89 10.37 -12.02 -0.12 -6.01 16 19 C 0.15 1.77 6.63 -84.51 -0.56 1.21 16 20 C -0.11 -1.04 10.03 -39.26 -0.39 -1.43 16 21 C -0.08 -0.56 10.00 -39.55 -0.40 -0.96 16 22 C -0.14 -1.15 10.02 -39.52 -0.40 -1.54 16 23 C -0.04 -0.43 9.68 -39.35 -0.38 -0.81 16 24 C -0.20 -2.46 5.89 -104.78 -0.62 -3.08 16 25 C 0.54 7.68 7.66 -12.43 -0.10 7.58 16 26 O -0.50 -8.53 16.32 5.17 0.08 -8.45 16 27 C 0.06 1.19 5.74 -2.18 -0.01 1.18 16 28 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 29 H 0.38 9.93 7.32 45.56 0.33 10.27 16 30 H 0.05 1.16 7.98 -51.93 -0.41 0.75 16 31 H 0.08 1.88 7.23 -51.93 -0.38 1.51 16 32 H 0.03 0.49 7.75 -51.93 -0.40 0.09 16 33 H 0.07 1.05 7.86 -51.93 -0.41 0.64 16 34 H 0.08 1.22 8.08 -51.93 -0.42 0.80 16 35 H 0.04 0.49 7.77 -51.93 -0.40 0.09 16 36 H 0.10 0.91 7.32 -51.93 -0.38 0.53 16 37 H 0.11 1.55 7.45 -51.93 -0.39 1.16 16 38 H 0.20 1.13 7.99 -52.49 -0.42 0.71 16 39 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 40 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 41 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.14 1.42 7.83 -52.48 -0.41 1.01 16 43 H 0.08 1.74 7.67 -51.93 -0.40 1.34 16 44 H 0.03 0.66 7.94 -51.93 -0.41 0.25 16 LS Contribution 362.80 15.07 5.47 5.47 Total: -1.00 -31.08 362.80 -10.82 -41.90 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -5.30 Total: 9.62 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -4.54 Total: -2.42 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: -1.06 Total: -46.28 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.37 Total: -24.17 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.08 -10.82 -41.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150811.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.553 kcal (2) G-P(sol) polarization free energy of solvation -31.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds