Wall clock time and date at job start Tue Mar 31 2020 05:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99673 * 2 1 4 4 H 1.48501 * 109.47369 * 239.99900 * 3 2 1 5 5 H 1.48495 * 109.47341 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46923 * 119.99852 * 3 2 1 7 7 C 1.37874 * 120.00516 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00446 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99789 * 0.02562 * 7 2 1 10 10 O 1.42898 * 110.64063 * 56.85394 * 9 7 2 11 11 C 1.55157 * 110.71861 * 179.97438 * 9 7 2 12 12 C 1.54913 * 101.61168 * 154.01892 * 11 9 7 13 13 N 1.47463 * 104.81413 * 323.04401 * 12 11 9 14 14 C 1.34779 * 125.62713 * 204.04862 * 13 12 11 15 15 O 1.21571 * 119.99992 * 174.24571 * 14 13 12 16 16 C 1.47699 * 120.00349 * 354.25070 * 14 13 12 17 17 C 1.39693 * 120.07346 * 335.21868 * 16 14 13 18 18 C 1.37751 * 119.91164 * 179.74030 * 17 16 14 19 19 C 1.39015 * 120.08382 * 0.52994 * 18 17 16 20 20 N 1.39974 * 119.92310 * 179.73930 * 19 18 17 21 21 C 1.35133 * 127.39165 * 359.69406 * 20 19 18 22 22 N 1.30722 * 107.26294 * 179.83796 * 21 20 19 23 23 N 1.28415 * 110.65601 * 0.44106 * 22 21 20 24 24 N 1.28955 * 110.21430 * 359.72051 * 23 22 21 25 25 C 1.39024 * 120.16079 * 359.72448 * 19 18 17 26 26 C 1.37747 * 120.07704 * 0.02562 * 25 19 18 27 27 C 1.47014 * 108.72379 * 24.07127 * 13 12 11 28 28 H 0.96997 * 120.00298 * 0.02562 * 1 2 3 29 29 H 0.96704 * 114.00319 * 303.13968 * 10 9 7 30 30 H 1.09000 * 111.00628 * 272.10987 * 11 9 7 31 31 H 1.08993 * 111.00648 * 35.93091 * 11 9 7 32 32 H 1.09002 * 110.36391 * 81.85187 * 12 11 9 33 33 H 1.09004 * 110.36900 * 204.16657 * 12 11 9 34 34 H 1.07993 * 120.04655 * 359.97438 * 17 16 14 35 35 H 1.08001 * 119.95776 * 180.25236 * 18 17 16 36 36 H 1.08002 * 126.36589 * 359.97438 * 21 20 19 37 37 H 1.07995 * 119.95874 * 179.97438 * 25 19 18 38 38 H 1.07999 * 120.04138 * 179.97438 * 26 25 19 39 39 H 1.09003 * 109.88372 * 239.56138 * 27 13 12 40 40 H 1.09001 * 110.01315 * 118.46839 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.3665 -2.5701 -1.1194 11 6 2.2336 -3.7001 0.0005 12 6 1.3752 -4.8051 0.6653 13 7 0.5908 -4.1031 1.6980 14 6 0.0655 -4.6673 2.8036 15 8 -0.4756 -3.9728 3.6419 16 6 0.1473 -6.1293 2.9968 17 6 0.2720 -6.9754 1.8923 18 6 0.3534 -8.3381 2.0766 19 6 0.3005 -8.8722 3.3590 20 7 0.3780 -10.2578 3.5420 21 6 0.4992 -11.2062 2.5871 22 7 0.5389 -12.3638 3.1929 23 7 0.4421 -12.2132 4.4645 24 7 0.3406 -10.9618 4.7585 25 6 0.1711 -8.0335 4.4602 26 6 0.0943 -6.6695 4.2838 27 6 0.4761 -2.6865 1.3218 28 1 -0.4850 0.8400 -0.0004 29 1 -0.2682 -1.8420 -1.1662 30 1 2.5100 -3.9788 -1.0163 31 1 3.1186 -3.4808 0.5976 32 1 0.7119 -5.2630 -0.0685 33 1 2.0156 -5.5597 1.1219 34 1 0.3084 -6.5616 0.8954 35 1 0.4540 -8.9927 1.2235 36 1 0.5551 -11.0386 1.5216 37 1 0.1299 -8.4520 5.4549 38 1 -0.0066 -6.0186 5.1396 39 1 0.9126 -2.0599 2.0996 40 1 -0.5716 -2.4225 1.1778 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592835474.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:39 Heat of formation + Delta-G solvation = 82.519929 kcal Electronic energy + Delta-G solvation = -27136.558270 eV Core-core repulsion = 23147.910056 eV Total energy + Delta-G solvation = -3988.648215 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.60182 -40.50201 -38.96784 -37.36835 -35.40494 -34.54842 -32.79356 -32.27609 -31.61846 -30.92922 -30.00004 -28.03726 -26.18098 -25.00927 -24.35005 -23.45231 -22.23741 -21.96631 -19.99077 -19.53168 -19.00304 -17.45106 -17.18226 -17.01212 -16.54003 -16.05623 -15.64676 -15.09523 -14.97490 -14.77862 -14.37801 -14.03431 -13.80750 -13.67142 -13.60201 -13.27490 -13.01145 -12.95408 -12.63445 -12.29508 -11.93145 -11.76958 -11.57468 -11.47447 -11.41612 -11.12409 -10.92676 -10.91433 -10.78008 -10.61420 -10.30165 -9.73690 -9.57913 -9.45738 -9.03811 -8.77006 -8.46195 -8.12247 -6.40031 -4.48910 -0.22075 0.82636 1.04882 1.32372 1.85137 2.75974 3.15187 3.21974 3.22991 3.29823 3.53890 3.60397 3.78400 4.18002 4.26162 4.38542 4.44301 4.53783 4.79633 4.87606 4.93004 4.96742 5.10560 5.18846 5.42580 5.49952 5.51674 5.64216 5.73331 5.79277 5.88655 5.93563 6.06580 6.31278 6.32301 6.59125 6.67620 6.75017 7.11956 7.21084 7.62629 7.85224 7.94939 7.97001 8.41144 8.54563 9.19651 9.30536 10.67797 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.031824 B = 0.002454 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.624277 B =11407.479446 C =11854.084361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.250 3.750 10 O -0.586 6.586 11 C -0.120 4.120 12 C 0.094 3.906 13 N -0.601 5.601 14 C 0.557 3.443 15 O -0.540 6.540 16 C -0.105 4.105 17 C -0.074 4.074 18 C -0.126 4.126 19 C 0.138 3.862 20 N -0.324 5.324 21 C 0.228 3.772 22 N -0.331 5.331 23 N -0.036 5.036 24 N -0.075 5.075 25 C -0.108 4.108 26 C -0.044 4.044 27 C 0.100 3.900 28 H 0.273 0.727 29 H 0.387 0.613 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.158 0.842 35 H 0.141 0.859 36 H 0.241 0.759 37 H 0.146 0.854 38 H 0.150 0.850 39 H 0.070 0.930 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.228 -15.730 1.528 15.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.578 4.578 8 H 0.085 0.915 9 C 0.209 3.791 10 O -0.397 6.397 11 C -0.157 4.157 12 C -0.028 4.028 13 N -0.333 5.333 14 C 0.345 3.655 15 O -0.419 6.419 16 C -0.109 4.109 17 C -0.093 4.093 18 C -0.147 4.147 19 C 0.045 3.955 20 N -0.114 5.114 21 C -0.069 4.069 22 N -0.180 5.180 23 N -0.031 5.031 24 N -0.060 5.060 25 C -0.128 4.128 26 C -0.063 4.063 27 C -0.022 4.022 28 H 0.083 0.917 29 H 0.240 0.760 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.175 0.825 35 H 0.158 0.842 36 H 0.257 0.743 37 H 0.164 0.836 38 H 0.167 0.833 39 H 0.088 0.912 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.074 -16.717 3.048 17.027 hybrid contribution 0.039 2.137 -0.568 2.211 sum 1.113 -14.581 2.481 14.832 Atomic orbital electron populations 1.69545 1.06042 1.28264 1.49684 1.25071 0.95068 0.99866 0.93204 0.86432 0.79548 0.81928 0.78873 1.19925 1.21014 1.19981 1.21471 0.93717 0.90040 1.52522 0.91468 1.19463 0.85815 0.92191 0.81632 1.86064 1.51474 1.53504 1.48624 1.22806 0.97769 0.94718 1.00448 1.22659 0.93903 0.96141 0.90145 1.48715 1.51262 1.12559 1.20737 1.17769 0.79808 0.86505 0.81406 1.90791 1.45196 1.63426 1.42501 1.20354 1.02001 0.94363 0.94160 1.21841 0.95214 0.91792 1.00484 1.20797 1.03596 0.96141 0.94165 1.17754 1.04711 0.77297 0.95700 1.49067 1.48771 1.07358 1.06243 1.27510 0.96347 0.83648 0.99380 1.74492 1.21436 1.22280 0.99757 1.78097 1.09538 1.08564 1.06912 1.82693 1.21034 0.99409 1.02866 1.20907 1.00877 0.92727 0.98321 1.21231 0.94051 0.93832 0.97203 1.23150 1.01988 0.77187 0.99834 0.91732 0.76046 0.90208 0.90337 0.91146 0.91389 0.82458 0.84153 0.74294 0.83584 0.83270 0.91199 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.63 10.98 55.43 0.61 -22.02 16 2 C 0.07 1.76 5.28 -17.82 -0.09 1.67 16 3 Si 0.91 19.56 29.54 -169.99 -5.02 14.54 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.54 -13.20 8.11 -34.44 -0.28 -13.48 16 8 H 0.07 1.62 7.76 -52.49 -0.41 1.21 16 9 C 0.25 5.52 0.86 -89.93 -0.08 5.44 16 10 O -0.59 -13.58 13.09 -35.23 -0.46 -14.05 16 11 C -0.12 -2.09 6.22 -24.58 -0.15 -2.24 16 12 C 0.09 1.37 4.98 -2.51 -0.01 1.35 16 13 N -0.60 -10.84 3.33 -171.65 -0.57 -11.41 16 14 C 0.56 9.78 7.63 -12.39 -0.09 9.69 16 15 O -0.54 -11.48 16.93 5.30 0.09 -11.39 16 16 C -0.10 -1.34 5.67 -104.95 -0.59 -1.93 16 17 C -0.07 -0.72 8.06 -39.22 -0.32 -1.04 16 18 C -0.13 -0.92 9.47 -39.47 -0.37 -1.30 16 19 C 0.14 1.24 6.71 -83.56 -0.56 0.67 16 20 N -0.32 -3.05 3.85 -11.70 -0.05 -3.09 16 21 C 0.23 1.69 12.15 -90.11 -1.09 0.59 16 22 N -0.33 -3.56 12.15 29.65 0.36 -3.20 16 23 N -0.04 -0.45 13.39 60.35 0.81 0.36 16 24 N -0.07 -0.89 13.31 60.35 0.80 -0.08 16 25 C -0.11 -1.05 9.68 -39.47 -0.38 -1.43 16 26 C -0.04 -0.49 9.58 -39.22 -0.38 -0.87 16 27 C 0.10 2.20 5.55 -3.07 -0.02 2.18 16 28 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 29 H 0.39 9.39 6.98 45.56 0.32 9.71 16 30 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.08 1.33 8.03 -51.93 -0.42 0.92 16 32 H 0.07 0.93 6.82 -51.93 -0.35 0.57 16 33 H 0.07 0.78 6.85 -51.93 -0.36 0.43 16 34 H 0.16 1.42 4.61 -52.49 -0.24 1.18 16 35 H 0.14 0.49 6.86 -52.49 -0.36 0.13 16 36 H 0.24 0.44 7.17 -52.49 -0.38 0.06 16 37 H 0.15 1.30 7.75 -52.49 -0.41 0.89 16 38 H 0.15 1.66 7.84 -52.49 -0.41 1.25 16 39 H 0.07 1.70 7.82 -51.93 -0.41 1.30 16 40 H 0.07 1.65 8.07 -51.93 -0.42 1.23 16 LS Contribution 340.83 15.07 5.14 5.14 Total: -1.00 -30.51 340.83 -6.11 -36.62 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -3.39 Total: 9.29 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -4.43 Total: -0.69 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 1.96 Total: -39.45 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.37 Total: -25.43 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.51 -6.11 -36.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592835474.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.139 kcal (2) G-P(sol) polarization free energy of solvation -30.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds