Wall clock time and date at job start Tue Mar 31 2020 05:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 120.00060 * 2 1 4 4 H 1.48499 * 109.47302 * 270.00135 * 3 2 1 5 5 H 1.48502 * 109.47023 * 30.00279 * 3 2 1 6 6 H 1.48502 * 109.47301 * 150.00040 * 3 2 1 7 7 C 1.37882 * 120.00228 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00281 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99959 * 359.97438 * 7 2 1 10 10 O 1.42898 * 110.64061 * 298.31710 * 9 7 2 11 11 C 1.55149 * 110.87533 * 175.06557 * 9 7 2 12 12 C 1.55130 * 101.49016 * 205.90116 * 11 9 7 13 13 N 1.47423 * 104.72259 * 37.29375 * 12 11 9 14 14 C 1.34773 * 125.65190 * 155.82261 * 13 12 11 15 15 O 1.21554 * 119.99840 * 4.96156 * 14 13 12 16 16 C 1.47852 * 120.00470 * 184.96157 * 14 13 12 17 17 C 1.39622 * 120.11026 * 351.71361 * 16 14 13 18 18 C 1.37975 * 119.98094 * 179.76891 * 17 16 14 19 19 C 1.38269 * 120.21905 * 0.51045 * 18 17 16 20 20 C 1.38898 * 120.22246 * 359.74751 * 19 18 17 21 21 N 1.40288 * 119.99095 * 180.02562 * 20 19 18 22 22 C 1.35066 * 127.38773 * 359.67254 * 21 20 19 23 23 N 1.30738 * 107.27342 * 179.88004 * 22 21 20 24 24 N 1.28421 * 110.64579 * 0.41369 * 23 22 21 25 25 N 1.28940 * 110.20658 * 359.73756 * 24 23 22 26 26 C 1.38572 * 120.01804 * 359.97438 * 20 19 18 27 27 C 1.47022 * 108.69963 * 335.55459 * 13 12 11 28 28 H 0.96999 * 120.00612 * 359.97438 * 1 2 3 29 29 H 0.96700 * 114.00310 * 61.68662 * 10 9 7 30 30 H 1.09007 * 111.00587 * 324.14001 * 11 9 7 31 31 H 1.09000 * 111.00625 * 87.95328 * 11 9 7 32 32 H 1.09003 * 110.49314 * 278.45736 * 12 11 9 33 33 H 1.08994 * 110.34671 * 156.06283 * 12 11 9 34 34 H 1.07999 * 120.00758 * 359.97438 * 17 16 14 35 35 H 1.08004 * 119.89012 * 180.25374 * 18 17 16 36 36 H 1.07998 * 119.88995 * 179.75990 * 19 18 17 37 37 H 1.07997 * 126.36332 * 0.02562 * 22 21 20 38 38 H 1.08000 * 120.11041 * 180.02562 * 26 20 19 39 39 H 1.09001 * 109.88356 * 120.70774 * 27 13 12 40 40 H 1.09001 * 109.88700 * 241.71320 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.4503 -2.6185 1.1770 11 6 2.2254 -3.7000 -0.1259 12 6 1.3105 -4.7744 -0.7703 13 7 0.4607 -4.0256 -1.7140 14 6 -0.1465 -4.5394 -2.8020 15 8 -0.0887 -5.7332 -3.0233 16 6 -0.8831 -3.6511 -3.7263 17 6 -1.0994 -2.3136 -3.3889 18 6 -1.7830 -1.4858 -4.2556 19 6 -2.2647 -1.9786 -5.4543 20 6 -2.0592 -3.3091 -5.7963 21 7 -2.5496 -3.8039 -7.0140 22 6 -3.2414 -3.1263 -7.9556 23 7 -3.4986 -3.9637 -8.9261 24 7 -3.0241 -5.1266 -8.6584 25 7 -2.4318 -5.1131 -7.5132 26 6 -1.3689 -4.1475 -4.9356 27 6 0.3802 -2.6269 -1.2682 28 1 -0.4851 0.8400 0.0004 29 1 -0.2278 -1.9345 1.2626 30 1 3.0650 -3.4557 -0.7768 31 1 2.5751 -4.0235 0.8545 32 1 0.6975 -5.2591 -0.0104 33 1 1.9099 -5.5125 -1.3030 34 1 -0.7289 -1.9264 -2.4513 35 1 -1.9459 -0.4504 -3.9950 36 1 -2.8024 -1.3269 -6.1269 37 1 -3.5269 -2.0855 -7.9154 38 1 -1.2079 -5.1821 -5.2003 39 1 0.7610 -1.9669 -2.0476 40 1 -0.6537 -2.3701 -1.0379 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592839004.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:28 Heat of formation + Delta-G solvation = 95.692841 kcal Electronic energy + Delta-G solvation = -27708.075903 eV Core-core repulsion = 23719.998908 eV Total energy + Delta-G solvation = -3988.076994 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.41083 -40.45096 -38.86408 -37.41517 -35.31936 -34.41737 -32.59938 -32.47253 -31.63976 -30.89193 -29.72157 -28.07994 -25.82124 -25.10672 -24.64722 -23.24201 -22.13097 -21.73332 -20.11472 -19.77012 -18.41461 -17.37276 -16.95735 -16.82492 -16.26776 -16.06146 -15.71973 -15.20681 -14.96435 -14.95255 -14.31574 -14.08133 -13.70225 -13.45822 -13.29313 -13.19222 -13.04524 -12.78024 -12.62789 -11.90840 -11.78535 -11.69485 -11.64632 -11.58225 -11.24553 -11.15629 -10.78095 -10.76578 -10.73972 -10.56601 -10.39452 -9.80615 -9.46506 -9.30826 -8.89731 -8.86584 -8.48858 -8.16055 -6.52999 -4.60579 0.10838 0.71646 1.42579 1.50714 2.02545 2.88407 3.04707 3.14328 3.17806 3.27849 3.73012 3.80021 3.99056 4.08452 4.41577 4.61163 4.68352 4.72823 4.80410 5.02280 5.11276 5.17384 5.23420 5.41603 5.54182 5.65386 5.67868 5.79055 5.87944 6.02719 6.06882 6.10108 6.17467 6.26821 6.40606 6.56211 6.58665 6.71485 6.82297 7.08635 7.50582 7.75448 7.94663 8.15443 8.38789 8.46587 9.07624 9.16800 10.54893 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.016093 B = 0.003412 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.519062 B = 8203.469909 C = 9543.526808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.072 3.928 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.068 0.932 9 C 0.247 3.753 10 O -0.581 6.581 11 C -0.119 4.119 12 C 0.110 3.890 13 N -0.602 5.602 14 C 0.564 3.436 15 O -0.551 6.551 16 C -0.104 4.104 17 C -0.105 4.105 18 C -0.099 4.099 19 C -0.102 4.102 20 C 0.105 3.895 21 N -0.318 5.318 22 C 0.222 3.778 23 N -0.333 5.333 24 N -0.040 5.040 25 N -0.072 5.072 26 C -0.046 4.046 27 C 0.078 3.922 28 H 0.271 0.729 29 H 0.382 0.618 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.191 0.809 35 H 0.147 0.853 36 H 0.136 0.864 37 H 0.239 0.761 38 H 0.151 0.849 39 H 0.081 0.919 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.584 1.732 -7.551 9.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.572 4.572 8 H 0.087 0.913 9 C 0.207 3.793 10 O -0.390 6.390 11 C -0.157 4.157 12 C -0.012 4.012 13 N -0.334 5.334 14 C 0.353 3.647 15 O -0.432 6.432 16 C -0.108 4.108 17 C -0.123 4.123 18 C -0.118 4.118 19 C -0.123 4.123 20 C 0.013 3.987 21 N -0.108 5.108 22 C -0.075 4.075 23 N -0.183 5.183 24 N -0.035 5.035 25 N -0.058 5.058 26 C -0.067 4.067 27 C -0.043 4.043 28 H 0.081 0.919 29 H 0.232 0.768 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.208 0.792 35 H 0.164 0.836 36 H 0.154 0.846 37 H 0.255 0.745 38 H 0.169 0.831 39 H 0.099 0.901 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.335 -0.619 -8.324 9.405 hybrid contribution -0.024 2.431 0.348 2.456 sum -4.359 1.812 -7.976 9.268 Atomic orbital electron populations 1.69655 1.05929 1.28133 1.50333 1.25034 0.95108 0.99714 0.93227 0.86400 0.80005 0.82218 0.78362 1.20371 1.20914 1.19644 1.21557 0.93940 0.89902 1.51811 0.91337 1.19540 0.86504 0.92389 0.80890 1.86169 1.51762 1.56464 1.44571 1.22831 0.97346 0.94914 1.00588 1.22314 0.92534 0.95011 0.91372 1.48636 1.47700 1.12873 1.24142 1.17731 0.79399 0.87051 0.80520 1.90750 1.62331 1.15229 1.74862 1.19872 1.01160 0.94658 0.95066 1.23606 0.93691 0.92281 1.02715 1.21132 0.97178 1.01001 0.92459 1.21054 1.00732 0.91983 0.98544 1.17360 1.03248 0.93857 0.84208 1.49069 1.37446 1.08867 1.15428 1.27402 0.93149 1.01873 0.85053 1.74465 1.22748 0.96896 1.24148 1.78077 1.05592 1.13743 1.06087 1.82756 1.20251 0.95796 1.06962 1.20965 0.93678 1.00544 0.91557 1.23612 1.01703 0.78974 1.00037 0.91857 0.76784 0.90284 0.90201 0.91417 0.91349 0.79235 0.83560 0.84634 0.74500 0.83111 0.90121 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -19.71 10.96 55.43 0.61 -19.10 16 2 C 0.07 1.60 5.28 -17.82 -0.09 1.50 16 3 Si 0.90 17.93 29.54 -169.99 -5.02 12.91 16 4 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.53 -12.12 8.13 -34.44 -0.28 -12.40 16 8 H 0.07 1.57 7.78 -52.49 -0.41 1.16 16 9 C 0.25 5.17 0.85 -89.94 -0.08 5.09 16 10 O -0.58 -12.90 13.07 -35.23 -0.46 -13.37 16 11 C -0.12 -2.18 6.24 -24.47 -0.15 -2.33 16 12 C 0.11 1.95 6.89 -2.41 -0.02 1.94 16 13 N -0.60 -11.16 3.32 -174.89 -0.58 -11.74 16 14 C 0.56 10.52 7.81 -12.33 -0.10 10.43 16 15 O -0.55 -11.60 16.67 5.32 0.09 -11.52 16 16 C -0.10 -1.63 5.87 -104.99 -0.62 -2.25 16 17 C -0.11 -1.47 8.59 -39.16 -0.34 -1.81 16 18 C -0.10 -1.06 10.02 -39.67 -0.40 -1.46 16 19 C -0.10 -0.95 9.48 -39.33 -0.37 -1.32 16 20 C 0.11 1.26 6.70 -83.62 -0.56 0.70 16 21 N -0.32 -3.86 3.85 -11.78 -0.05 -3.91 16 22 C 0.22 2.10 12.15 -90.16 -1.10 1.00 16 23 N -0.33 -4.23 12.15 29.64 0.36 -3.87 16 24 N -0.04 -0.59 13.39 60.35 0.81 0.21 16 25 N -0.07 -1.08 13.33 60.35 0.80 -0.27 16 26 C -0.05 -0.68 9.24 -39.00 -0.36 -1.04 16 27 C 0.08 1.48 3.24 -3.06 -0.01 1.47 16 28 H 0.27 5.72 8.31 -40.82 -0.34 5.38 16 29 H 0.38 8.48 7.45 45.56 0.34 8.82 16 30 H 0.08 1.39 8.05 -51.92 -0.42 0.97 16 31 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.07 1.15 8.09 -51.93 -0.42 0.73 16 34 H 0.19 2.99 2.77 -56.91 -0.16 2.83 16 35 H 0.15 1.25 8.06 -52.48 -0.42 0.83 16 36 H 0.14 0.70 6.87 -52.49 -0.36 0.34 16 37 H 0.24 0.85 7.18 -52.49 -0.38 0.47 16 38 H 0.15 2.39 7.38 -52.49 -0.39 2.00 16 39 H 0.08 1.56 6.36 -51.93 -0.33 1.23 16 40 H 0.08 1.54 6.55 -51.93 -0.34 1.20 16 LS Contribution 339.23 15.07 5.11 5.11 Total: -1.00 -27.73 339.23 -6.06 -33.79 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -3.26 Total: 12.23 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -4.47 Total: -0.47 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 1.95 Total: -38.68 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.37 Total: -24.88 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.02 Total: 12.91 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.73 -6.06 -33.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839004.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.480 kcal (2) G-P(sol) polarization free energy of solvation -27.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds