Wall clock time and date at job start Tue Mar 31 2020 05:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00062 * 2 1 4 4 H 1.48499 * 109.47095 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47033 * 299.99231 * 3 2 1 6 6 H 1.48497 * 109.47396 * 59.99526 * 3 2 1 7 7 C 1.37873 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00038 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00307 * 0.02562 * 7 2 1 10 10 O 1.42901 * 110.88691 * 62.42097 * 9 7 2 11 11 C 1.55401 * 111.07668 * 186.20731 * 9 7 2 12 12 C 1.54324 * 102.83171 * 153.48710 * 11 9 7 13 13 N 1.47021 * 107.39870 * 337.97664 * 12 11 9 14 14 C 1.34778 * 125.64494 * 178.82711 * 13 12 11 15 15 O 1.21552 * 119.99638 * 174.83487 * 14 13 12 16 16 C 1.47855 * 120.00132 * 354.83869 * 14 13 12 17 17 C 1.39618 * 120.11297 * 7.67005 * 16 14 13 18 18 C 1.37978 * 119.98073 * 179.69856 * 17 16 14 19 19 C 1.38268 * 120.21880 * 0.60485 * 18 17 16 20 20 C 1.38900 * 120.22448 * 359.67321 * 19 18 17 21 21 N 1.40285 * 119.99360 * 180.02562 * 20 19 18 22 22 C 1.35060 * 127.38854 * 0.02562 * 21 20 19 23 23 N 1.30739 * 107.27977 * 179.97438 * 22 21 20 24 24 N 1.28422 * 110.64226 * 0.02562 * 23 22 21 25 25 N 1.28952 * 110.20069 * 359.73008 * 24 23 22 26 26 C 1.38581 * 120.01404 * 0.02562 * 20 19 18 27 27 C 1.47423 * 108.70691 * 358.86261 * 13 12 11 28 28 H 0.97005 * 119.99802 * 0.02562 * 1 2 3 29 29 H 0.96697 * 114.00539 * 297.58246 * 10 9 7 30 30 H 1.09008 * 110.69202 * 35.19784 * 11 9 7 31 31 H 1.09000 * 110.85098 * 271.85339 * 11 9 7 32 32 H 1.09002 * 109.87757 * 218.48314 * 12 11 9 33 33 H 1.08995 * 109.88033 * 97.47448 * 12 11 9 34 34 H 1.08003 * 120.00938 * 359.97438 * 17 16 14 35 35 H 1.08005 * 119.88827 * 180.29537 * 18 17 16 36 36 H 1.07993 * 119.88608 * 179.69952 * 19 18 17 37 37 H 1.08009 * 126.36029 * 0.02562 * 22 21 20 38 38 H 1.08002 * 120.10429 * 180.02562 * 26 20 19 39 39 H 1.09005 * 110.36604 * 142.96224 * 27 13 12 40 40 H 1.08995 * 110.36772 * 265.18096 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2127 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 0.4615 -2.6316 -1.1831 11 6 2.2200 -3.7038 0.1580 12 6 1.3256 -4.7805 0.8078 13 7 0.2054 -4.0865 1.4597 14 6 -0.8087 -4.6798 2.1202 15 8 -1.6335 -4.0027 2.7021 16 6 -0.9178 -6.1542 2.1369 17 6 0.1095 -6.9386 1.6089 18 6 0.0077 -8.3144 1.6316 19 6 -1.1150 -8.9205 2.1645 20 6 -2.1448 -8.1485 2.6869 21 7 -3.2815 -8.7685 3.2269 22 6 -3.5290 -10.0933 3.3156 23 7 -4.6981 -10.2328 3.8838 24 7 -5.2069 -9.0865 4.1600 25 7 -4.4050 -8.1442 3.7969 26 6 -2.0497 -6.7661 2.6747 27 6 0.3745 -2.6342 1.2707 28 1 -0.4850 0.8401 -0.0004 29 1 -0.2244 -1.9563 -1.2761 30 1 3.0517 -3.4460 0.8138 31 1 2.5833 -4.0391 -0.8135 32 1 1.8972 -5.3393 1.5489 33 1 0.9470 -5.4588 0.0432 34 1 0.9856 -6.4687 1.1870 35 1 0.8054 -8.9199 1.2271 36 1 -1.1912 -9.9977 2.1751 37 1 -2.8809 -10.8896 2.9801 38 1 -2.8494 -6.1644 3.0808 39 1 -0.5931 -2.1565 1.1163 40 1 0.8802 -2.1960 2.1310 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592839005.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:32 Heat of formation + Delta-G solvation = 99.249630 kcal Electronic energy + Delta-G solvation = -27332.469545 eV Core-core repulsion = 23344.546785 eV Total energy + Delta-G solvation = -3987.922761 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.49540 -40.53110 -38.90535 -37.30026 -35.49702 -34.44906 -32.67986 -32.32541 -31.58441 -30.77380 -30.15491 -28.04346 -25.74444 -25.47228 -24.29718 -23.48435 -22.08432 -21.97072 -20.15317 -19.77318 -18.49632 -17.30534 -17.03611 -16.91019 -16.22539 -16.10193 -15.70131 -15.31043 -15.12865 -14.74586 -14.38996 -14.21194 -13.83836 -13.53709 -13.31103 -13.18713 -13.11947 -12.79803 -12.56381 -12.23158 -11.81928 -11.77915 -11.62924 -11.38793 -11.27600 -11.10879 -10.85344 -10.81820 -10.64403 -10.53929 -10.29959 -9.65141 -9.47544 -9.44985 -9.04553 -8.78862 -8.50060 -7.99997 -6.36588 -4.46684 -0.02604 0.58685 1.26885 1.41090 1.95058 2.80635 3.14083 3.23659 3.26084 3.28996 3.64884 3.71072 3.87636 4.19348 4.27478 4.46912 4.51971 4.61754 4.75374 4.89688 4.99863 5.03300 5.08073 5.15024 5.36243 5.46585 5.56731 5.70084 5.76386 5.82324 5.86889 5.95114 6.08733 6.31564 6.38491 6.56209 6.70064 6.78656 7.11468 7.21991 7.65168 7.90327 7.96863 8.07896 8.46472 8.57913 9.18962 9.28342 10.70574 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.027058 B = 0.002653 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.571649 B =10550.680344 C =11271.396967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.249 3.751 10 O -0.583 6.583 11 C -0.120 4.120 12 C 0.090 3.910 13 N -0.598 5.598 14 C 0.559 3.441 15 O -0.538 6.538 16 C -0.095 4.095 17 C -0.115 4.115 18 C -0.102 4.102 19 C -0.105 4.105 20 C 0.113 3.887 21 N -0.322 5.322 22 C 0.223 3.777 23 N -0.332 5.332 24 N -0.037 5.037 25 N -0.069 5.069 26 C -0.047 4.047 27 C 0.094 3.906 28 H 0.271 0.729 29 H 0.382 0.618 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.176 0.824 35 H 0.145 0.855 36 H 0.137 0.863 37 H 0.239 0.761 38 H 0.154 0.846 39 H 0.089 0.911 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.833 -19.060 1.979 19.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.577 4.577 8 H 0.086 0.914 9 C 0.208 3.792 10 O -0.391 6.391 11 C -0.158 4.158 12 C -0.033 4.033 13 N -0.330 5.330 14 C 0.347 3.653 15 O -0.417 6.417 16 C -0.099 4.099 17 C -0.133 4.133 18 C -0.121 4.121 19 C -0.126 4.126 20 C 0.021 3.979 21 N -0.112 5.112 22 C -0.074 4.074 23 N -0.181 5.181 24 N -0.032 5.032 25 N -0.054 5.054 26 C -0.068 4.068 27 C -0.027 4.027 28 H 0.081 0.919 29 H 0.232 0.768 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.192 0.808 35 H 0.163 0.837 36 H 0.155 0.845 37 H 0.255 0.745 38 H 0.171 0.829 39 H 0.107 0.893 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.303 -18.662 2.867 18.926 hybrid contribution 0.865 1.126 -0.286 1.448 sum 2.168 -17.536 2.581 17.857 Atomic orbital electron populations 1.69711 1.06012 1.27972 1.49314 1.25086 0.95053 0.99865 0.93246 0.86340 0.80015 0.82675 0.77833 1.19564 1.20715 1.20750 1.21463 0.93694 0.89898 1.52639 0.91375 1.19684 0.86517 0.91708 0.81251 1.86101 1.51608 1.57197 1.44243 1.22745 0.97593 0.95083 1.00400 1.22510 0.88445 0.96410 0.95887 1.48655 1.22398 1.10351 1.51594 1.17699 0.81417 0.86335 0.79862 1.90794 1.41298 1.65039 1.44545 1.20030 0.94910 0.94456 1.00501 1.23185 1.00270 0.94271 0.95546 1.21049 0.97240 0.94706 0.99063 1.21012 0.92742 0.99910 0.98947 1.17400 0.85321 0.92500 1.02642 1.49086 1.15272 1.06069 1.40771 1.27406 0.96094 0.86855 0.97088 1.74477 1.07440 1.18340 1.17841 1.78108 1.19595 0.93144 1.12400 1.82801 0.91012 1.18208 1.13377 1.21049 0.98355 0.91578 0.95797 1.23395 1.03129 0.75913 1.00214 0.91938 0.76771 0.90068 0.90335 0.91505 0.90941 0.80767 0.83726 0.84546 0.74480 0.82877 0.89261 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.90 10.69 55.43 0.59 -22.31 16 2 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 3 Si 0.90 19.62 29.54 -169.99 -5.02 14.60 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 7 C -0.54 -13.18 8.28 -34.44 -0.29 -13.46 16 8 H 0.07 1.64 7.79 -52.48 -0.41 1.23 16 9 C 0.25 5.54 0.87 -89.49 -0.08 5.46 16 10 O -0.58 -13.79 13.16 -35.23 -0.46 -14.25 16 11 C -0.12 -2.07 6.15 -24.76 -0.15 -2.23 16 12 C 0.09 1.31 4.87 -3.06 -0.01 1.30 16 13 N -0.60 -11.17 3.33 -175.52 -0.58 -11.75 16 14 C 0.56 10.50 7.81 -12.32 -0.10 10.40 16 15 O -0.54 -12.19 16.67 5.32 0.09 -12.10 16 16 C -0.10 -1.34 5.87 -104.99 -0.62 -1.96 16 17 C -0.11 -1.17 8.59 -39.16 -0.34 -1.51 16 18 C -0.10 -0.71 10.02 -39.67 -0.40 -1.11 16 19 C -0.10 -0.73 9.48 -39.33 -0.37 -1.10 16 20 C 0.11 1.20 6.70 -83.62 -0.56 0.64 16 21 N -0.32 -3.58 3.85 -11.77 -0.05 -3.62 16 22 C 0.22 1.85 12.15 -90.16 -1.10 0.76 16 23 N -0.33 -3.95 12.15 29.64 0.36 -3.59 16 24 N -0.04 -0.54 13.39 60.35 0.81 0.27 16 25 N -0.07 -0.99 13.33 60.35 0.80 -0.18 16 26 C -0.05 -0.64 9.24 -39.00 -0.36 -1.00 16 27 C 0.09 2.11 5.37 -2.53 -0.01 2.10 16 28 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 29 H 0.38 9.43 7.56 45.56 0.34 9.78 16 30 H 0.08 1.31 8.04 -51.92 -0.42 0.89 16 31 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.07 0.75 6.82 -51.93 -0.35 0.40 16 33 H 0.07 0.94 6.64 -51.93 -0.34 0.60 16 34 H 0.18 1.63 2.76 -57.54 -0.16 1.47 16 35 H 0.15 0.53 8.06 -52.48 -0.42 0.10 16 36 H 0.14 0.39 6.87 -52.49 -0.36 0.03 16 37 H 0.24 0.52 7.18 -52.48 -0.38 0.14 16 38 H 0.15 2.39 7.38 -52.49 -0.39 2.00 16 39 H 0.09 2.29 7.38 -51.93 -0.38 1.90 16 40 H 0.06 1.51 8.03 -51.93 -0.42 1.10 16 LS Contribution 339.07 15.07 5.11 5.11 Total: -1.00 -31.85 339.07 -6.07 -37.92 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -3.24 Total: 9.95 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -4.47 Total: -0.03 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 1.94 Total: -41.19 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.37 Total: -26.36 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.85 -6.07 -37.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839005.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.166 kcal (2) G-P(sol) polarization free energy of solvation -31.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds