Wall clock time and date at job start Tue Mar 31 2020 05:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00060 * 2 1 4 4 H 1.48507 * 109.46877 * 268.24438 * 3 2 1 5 5 H 1.48502 * 109.47515 * 28.23978 * 3 2 1 6 6 H 1.48493 * 109.47341 * 148.24642 * 3 2 1 7 7 C 1.37879 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00006 * 356.10957 * 7 2 1 9 9 C 1.50697 * 119.99838 * 176.10630 * 7 2 1 10 10 O 1.42897 * 110.64234 * 322.55019 * 9 7 2 11 11 C 1.55154 * 110.72422 * 85.69910 * 9 7 2 12 12 C 1.54910 * 101.58453 * 154.04175 * 11 9 7 13 13 N 1.47424 * 104.83100 * 322.99031 * 12 11 9 14 14 C 1.34777 * 125.64847 * 204.09590 * 13 12 11 15 15 O 1.21575 * 120.00191 * 185.65393 * 14 13 12 16 16 C 1.47636 * 119.99921 * 5.65202 * 14 13 12 17 17 C 1.39620 * 120.18825 * 303.39127 * 16 14 13 18 18 C 1.37869 * 119.91588 * 180.02562 * 17 16 14 19 19 C 1.38502 * 120.29814 * 359.97323 * 18 17 16 20 20 C 1.38106 * 120.38033 * 0.04639 * 19 18 17 21 21 C 1.38707 * 120.07880 * 359.95345 * 20 19 18 22 22 N 1.39849 * 120.14795 * 180.02562 * 21 20 19 23 23 C 1.35152 * 127.39674 * 1.24899 * 22 21 20 24 24 N 1.30713 * 107.26318 * 179.83796 * 23 22 21 25 25 N 1.28419 * 110.65467 * 0.44907 * 24 23 22 26 26 N 1.28947 * 110.22255 * 359.71643 * 25 24 23 27 27 C 1.47023 * 108.70444 * 24.35624 * 13 12 11 28 28 H 0.96999 * 119.99962 * 359.97438 * 1 2 3 29 29 H 0.96701 * 114.00576 * 307.74344 * 10 9 7 30 30 H 1.09000 * 111.00218 * 35.96026 * 11 9 7 31 31 H 1.09003 * 110.99856 * 272.11538 * 11 9 7 32 32 H 1.08995 * 110.36461 * 204.15121 * 12 11 9 33 33 H 1.08998 * 110.46018 * 81.87376 * 12 11 9 34 34 H 1.08001 * 120.04140 * 359.73435 * 17 16 14 35 35 H 1.07995 * 119.84894 * 179.97438 * 18 17 16 36 36 H 1.07998 * 119.80500 * 180.02562 * 19 18 17 37 37 H 1.08002 * 119.95724 * 179.97438 * 20 19 18 38 38 H 1.08007 * 126.36672 * 359.97438 * 23 22 21 39 39 H 1.08990 * 109.88346 * 118.13066 * 27 13 12 40 40 H 1.09001 * 109.88485 * 239.29764 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5338 2.0249 -1.3995 5 1 1.4285 2.6632 0.6625 6 1 3.5276 1.4512 0.7368 7 6 2.0045 -1.1941 0.0005 8 1 1.4664 -2.1282 0.0644 9 6 3.5089 -1.1956 -0.0881 10 8 3.9629 -0.1631 -0.9655 11 6 4.1420 -1.0376 1.3196 12 6 5.5182 -1.7202 1.1201 13 7 5.2481 -2.8594 0.2242 14 6 5.9936 -3.9782 0.1295 15 8 5.7354 -4.8108 -0.7179 16 6 7.1238 -4.1926 1.0548 17 6 8.1479 -3.2476 1.1431 18 6 9.2010 -3.4538 2.0087 19 6 9.2481 -4.5947 2.7925 20 6 8.2420 -5.5376 2.7147 21 6 7.1752 -5.3461 1.8493 22 7 6.1553 -6.2997 1.7697 23 6 6.0452 -7.4448 2.4791 24 7 4.9438 -8.0347 2.0950 25 7 4.3548 -7.3460 1.1850 26 7 5.0277 -6.2760 0.9302 27 6 4.0342 -2.5702 -0.5533 28 1 -0.4850 0.8400 0.0004 29 1 3.5436 -0.1746 -1.8368 30 1 3.5527 -1.5592 2.0737 31 1 4.2615 0.0146 1.5783 32 1 5.9087 -2.0726 2.0748 33 1 6.2219 -1.0301 0.6547 34 1 8.1174 -2.3586 0.5307 35 1 9.9927 -2.7223 2.0758 36 1 10.0766 -4.7479 3.4682 37 1 8.2859 -6.4250 3.3288 38 1 6.7373 -7.8045 3.2262 39 1 4.2738 -2.5374 -1.6160 40 1 3.2817 -3.3358 -0.3642 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592840186.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:47 Heat of formation + Delta-G solvation = 99.343923 kcal Electronic energy + Delta-G solvation = -28470.000448 eV Core-core repulsion = 24482.081776 eV Total energy + Delta-G solvation = -3987.918672 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.25275 -40.48192 -38.98141 -37.44981 -35.40323 -34.75455 -32.46364 -32.38983 -31.81068 -30.50095 -30.07570 -28.39484 -25.90996 -25.07740 -24.42175 -22.90514 -22.30032 -21.93519 -20.06450 -19.59672 -18.58206 -17.69028 -17.33594 -16.67223 -16.41636 -15.93901 -15.65898 -15.47392 -15.08887 -14.81311 -14.58642 -14.35898 -13.73420 -13.54078 -13.44615 -13.05822 -12.95251 -12.70459 -12.38601 -12.17619 -12.09642 -11.92622 -11.80044 -11.57235 -11.50159 -11.13729 -10.93755 -10.59110 -10.53039 -10.35625 -10.12211 -9.73729 -9.46422 -9.21904 -9.02742 -8.65689 -8.63095 -8.16685 -6.23185 -4.35940 0.03269 0.59713 1.42562 1.63032 2.22890 2.78528 3.08444 3.36896 3.39273 3.45592 3.59815 3.78989 3.94201 4.30126 4.40239 4.43647 4.50594 4.64743 4.77201 4.91497 5.00640 5.09326 5.15612 5.22816 5.31500 5.35464 5.58043 5.66161 5.70880 5.75068 5.82526 5.89208 6.02426 6.08666 6.36357 6.52601 6.54957 6.66130 6.73364 7.07014 7.37682 7.86100 8.08119 8.34964 8.42820 8.62825 8.80038 9.35890 10.86180 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.015778 B = 0.004106 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.248209 B = 6817.375217 C = 7949.440742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.075 3.925 3 Si 0.936 3.064 4 H -0.289 1.289 5 H -0.321 1.321 6 H -0.263 1.263 7 C -0.554 4.554 8 H 0.082 0.918 9 C 0.220 3.780 10 O -0.567 6.567 11 C -0.123 4.123 12 C 0.097 3.903 13 N -0.600 5.600 14 C 0.563 3.437 15 O -0.509 6.509 16 C -0.100 4.100 17 C -0.068 4.068 18 C -0.114 4.114 19 C -0.082 4.082 20 C -0.128 4.128 21 C 0.170 3.830 22 N -0.338 5.338 23 C 0.216 3.784 24 N -0.332 5.332 25 N -0.044 5.044 26 N -0.015 5.015 27 C 0.098 3.902 28 H 0.267 0.733 29 H 0.374 0.626 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.237 0.763 39 H 0.061 0.939 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.184 -6.783 8.600 24.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.130 4.130 3 Si 0.770 3.230 4 H -0.217 1.217 5 H -0.252 1.252 6 H -0.188 1.188 7 C -0.591 4.591 8 H 0.100 0.900 9 C 0.179 3.821 10 O -0.375 6.375 11 C -0.161 4.161 12 C -0.025 4.025 13 N -0.333 5.333 14 C 0.349 3.651 15 O -0.384 6.384 16 C -0.106 4.106 17 C -0.087 4.087 18 C -0.133 4.133 19 C -0.101 4.101 20 C -0.149 4.149 21 C 0.076 3.924 22 N -0.129 5.129 23 C -0.081 4.081 24 N -0.179 5.179 25 N -0.039 5.039 26 N 0.000 5.000 27 C -0.024 4.024 28 H 0.077 0.923 29 H 0.223 0.777 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.160 0.840 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.158 0.842 38 H 0.253 0.747 39 H 0.080 0.920 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 20.981 -7.281 7.846 23.554 hybrid contribution 0.892 0.910 0.056 1.275 sum 21.873 -6.372 7.902 24.114 Atomic orbital electron populations 1.69954 1.06772 1.27788 1.47502 1.25113 0.94906 1.00238 0.92765 0.85978 0.78392 0.80450 0.78194 1.21651 1.25186 1.18831 1.21223 0.88048 0.95491 1.54363 0.90044 1.20069 0.93823 0.81775 0.86396 1.86162 1.69094 1.54246 1.28009 1.23154 0.93016 1.01137 0.98790 1.22482 0.99611 0.87707 0.92746 1.48413 1.27296 1.16718 1.40918 1.17456 0.81809 0.81436 0.84406 1.90833 1.69066 1.43095 1.35409 1.19879 0.98221 0.94162 0.98328 1.21340 0.92208 0.97694 0.97419 1.21294 0.98327 0.97940 0.95760 1.21140 0.97620 0.92932 0.98391 1.20813 0.93135 1.01674 0.99286 1.17431 0.87787 0.88291 0.98909 1.49165 1.18833 1.16722 1.28191 1.27406 0.97978 0.84780 0.97947 1.74441 1.06085 1.26137 1.11190 1.78181 1.19443 0.99041 1.07278 1.83429 0.91607 1.16083 1.08918 1.22853 0.84670 1.00010 0.94837 0.92307 0.77744 0.89787 0.89648 0.91990 0.91478 0.83968 0.84275 0.84074 0.84243 0.74717 0.92022 0.90586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 13.96 55.43 0.77 -25.24 16 2 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.94 22.08 24.74 -169.99 -4.21 17.87 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.32 -7.84 7.11 56.52 0.40 -7.44 16 6 H -0.26 -5.90 4.92 56.52 0.28 -5.62 16 7 C -0.55 -14.60 8.75 -34.44 -0.30 -14.90 16 8 H 0.08 2.40 7.79 -52.49 -0.41 1.99 16 9 C 0.22 4.78 0.70 -89.93 -0.06 4.71 16 10 O -0.57 -11.81 9.07 -35.23 -0.32 -12.13 16 11 C -0.12 -2.37 5.82 -24.58 -0.14 -2.51 16 12 C 0.10 1.54 5.70 -2.53 -0.01 1.53 16 13 N -0.60 -10.95 3.33 -171.70 -0.57 -11.52 16 14 C 0.56 10.12 6.05 -12.42 -0.08 10.05 16 15 O -0.51 -10.94 14.80 5.30 0.08 -10.86 16 16 C -0.10 -1.35 4.98 -104.83 -0.52 -1.87 16 17 C -0.07 -0.66 8.41 -39.20 -0.33 -0.99 16 18 C -0.11 -0.73 10.03 -39.62 -0.40 -1.13 16 19 C -0.08 -0.44 10.03 -39.53 -0.40 -0.84 16 20 C -0.13 -0.89 9.48 -39.46 -0.37 -1.26 16 21 C 0.17 2.01 6.71 -83.31 -0.56 1.45 16 22 N -0.34 -4.75 3.83 -11.53 -0.04 -4.79 16 23 C 0.22 2.36 12.15 -90.10 -1.10 1.27 16 24 N -0.33 -5.02 12.15 29.66 0.36 -4.66 16 25 N -0.04 -0.83 13.39 60.35 0.81 -0.02 16 26 N -0.02 -0.29 9.62 60.35 0.58 0.29 16 27 C 0.10 2.04 6.24 -3.05 -0.02 2.03 16 28 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.37 7.15 8.62 45.56 0.39 7.54 16 30 H 0.08 1.67 8.04 -51.93 -0.42 1.25 16 31 H 0.09 1.65 6.05 -51.93 -0.31 1.34 16 32 H 0.06 0.84 7.29 -51.93 -0.38 0.46 16 33 H 0.07 0.97 7.92 -51.93 -0.41 0.56 16 34 H 0.14 1.29 7.54 -52.49 -0.40 0.89 16 35 H 0.14 0.51 8.06 -52.49 -0.42 0.08 16 36 H 0.14 0.30 8.06 -52.49 -0.42 -0.12 16 37 H 0.14 0.46 6.88 -52.49 -0.36 0.10 16 38 H 0.24 0.96 7.19 -52.48 -0.38 0.59 16 39 H 0.06 1.27 8.07 -51.93 -0.42 0.85 16 40 H 0.08 1.75 7.64 -51.93 -0.40 1.36 16 LS Contribution 332.00 15.07 5.00 5.00 Total: -1.00 -36.50 332.00 -5.52 -42.02 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -3.59 Total: 4.58 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -4.39 Total: -0.54 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: 1.91 Total: -45.94 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.24 Total: -22.99 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.21 Total: 17.87 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -36.50 -5.52 -42.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840186.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.359 kcal (2) G-P(sol) polarization free energy of solvation -36.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds