Wall clock time and date at job start Tue Mar 31 2020 05:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99983 * 2 1 4 4 H 1.48509 * 109.47000 * 269.99917 * 3 2 1 5 5 H 1.48497 * 109.47270 * 29.99845 * 3 2 1 6 6 H 1.48493 * 109.47238 * 149.99975 * 3 2 1 7 7 C 1.37880 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99877 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99847 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47069 * 180.02562 * 9 7 2 11 11 S 1.81398 * 109.46956 * 180.02562 * 10 9 7 12 12 O 1.42106 * 110.54524 * 68.37467 * 11 10 9 13 13 O 1.42097 * 110.54522 * 291.62052 * 11 10 9 14 14 N 1.65607 * 104.44916 * 179.97438 * 11 10 9 15 15 C 1.47080 * 120.87795 * 89.99514 * 14 11 10 16 16 C 1.53238 * 108.52042 * 231.16405 * 15 14 11 17 17 N 1.46901 * 109.34172 * 306.17425 * 16 15 14 18 18 C 1.46902 * 110.99644 * 187.25463 * 17 16 15 19 19 C 1.50706 * 109.46577 * 169.99988 * 18 17 16 20 20 N 1.33240 * 125.52225 * 90.00341 * 19 18 17 21 21 C 1.30834 * 109.82458 * 179.97438 * 20 19 18 22 22 N 1.34433 * 108.07785 * 0.02562 * 21 20 19 23 23 H 0.97008 * 126.82069 * 180.02562 * 22 21 20 24 24 N 1.30707 * 125.52702 * 269.68784 * 19 18 17 25 25 C 1.46899 * 111.26947 * 63.10722 * 17 16 15 26 26 C 1.47079 * 120.88162 * 269.98015 * 14 11 10 27 27 H 0.96997 * 120.00166 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47189 * 59.99942 * 9 7 2 29 29 H 1.09000 * 109.47117 * 299.99775 * 9 7 2 30 30 H 1.09001 * 109.47369 * 59.99799 * 10 9 7 31 31 H 1.09000 * 109.46761 * 299.99740 * 10 9 7 32 32 H 1.09003 * 109.61961 * 111.45839 * 15 14 11 33 33 H 1.09000 * 109.79141 * 350.97475 * 15 14 11 34 34 H 1.09008 * 109.49004 * 186.21206 * 16 15 14 35 35 H 1.08999 * 109.49060 * 66.13684 * 16 15 14 36 36 H 1.09000 * 109.46894 * 50.00222 * 18 17 16 37 37 H 1.09000 * 109.47263 * 289.99788 * 18 17 16 38 38 H 1.08004 * 125.96006 * 179.97438 * 21 20 19 39 39 H 1.08997 * 109.49502 * 56.85130 * 25 17 16 40 40 H 1.08998 * 109.49418 * 176.93668 * 25 17 16 41 41 H 1.08999 * 109.62783 * 248.54671 * 26 14 11 42 42 H 1.09002 * 109.62946 * 9.12659 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0216 -2.6366 0.0010 11 16 5.8355 -2.6365 0.0025 12 8 6.3332 -2.1466 1.2401 13 8 6.3352 -2.1458 -1.2339 14 7 6.2488 -4.2402 0.0029 15 6 6.4381 -4.9713 -1.2592 16 6 5.5996 -6.2529 -1.2098 17 7 5.9381 -7.0094 0.0031 18 6 5.2840 -8.3248 0.0027 19 6 5.8404 -9.1626 1.1251 20 7 5.3590 -9.2117 2.3665 21 6 6.0740 -10.0368 3.0874 22 7 7.0450 -10.5399 2.3056 23 1 7.7281 -11.1780 2.5649 24 7 6.8698 -9.9632 1.0371 25 6 5.5981 -6.2527 1.2154 26 6 6.4366 -4.9710 1.2654 27 1 -0.4850 0.8400 -0.0004 28 1 3.8745 -0.6800 0.8911 29 1 3.8752 -0.6804 -0.8889 30 1 3.6586 -3.1503 -0.8892 31 1 3.6579 -3.1506 0.8908 32 1 7.4909 -5.2269 -1.3798 33 1 6.1132 -4.3531 -2.0961 34 1 5.8125 -6.8610 -2.0892 35 1 4.5408 -5.9944 -1.1937 36 1 5.4699 -8.8227 -0.9489 37 1 4.2106 -8.1969 0.1424 38 1 5.9129 -10.2719 4.1292 39 1 4.5393 -5.9942 1.1978 40 1 5.8100 -6.8605 2.0950 41 1 7.4892 -5.2266 1.3874 42 1 6.1083 -4.3511 2.0997 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593652976.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:55 Heat of formation + Delta-G solvation = 32.651623 kcal Electronic energy + Delta-G solvation = -26347.848223 eV Core-core repulsion = 22492.481508 eV Total energy + Delta-G solvation = -3855.366715 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.44170 -39.05775 -36.76786 -35.59187 -35.10697 -33.93244 -32.79500 -31.68150 -31.46617 -31.22737 -28.25670 -25.97088 -24.78924 -23.96706 -23.00434 -21.45418 -20.63321 -20.28512 -18.68773 -18.61492 -17.76439 -16.94923 -16.16020 -16.02295 -15.71936 -15.57542 -15.07099 -14.97178 -14.86320 -14.60112 -14.30369 -14.08062 -13.60851 -13.17472 -12.81105 -12.64605 -12.44060 -12.25199 -12.16114 -11.89350 -11.72914 -11.68199 -11.36869 -11.24566 -11.20302 -11.17771 -10.88028 -10.45816 -10.43488 -10.39027 -10.14805 -10.04791 -9.72938 -9.42736 -8.97251 -8.65421 -8.48887 -6.15762 -4.16920 0.64820 1.25959 2.30027 2.47277 2.90926 3.27377 3.34721 3.39196 3.61425 3.92304 4.21722 4.27944 4.36748 4.46837 4.55797 4.61820 4.93698 5.00789 5.08171 5.16083 5.23145 5.28496 5.33887 5.37953 5.49713 5.53343 5.57630 5.69611 5.83598 5.86233 5.99268 6.01599 6.03199 6.29861 6.59024 6.63965 6.75032 6.79927 6.82879 6.95337 7.55785 7.73788 8.37554 8.85435 9.43993 10.96650 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.019383 B = 0.002923 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.224655 B = 9576.343747 C =10172.627821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.071 3.929 3 Si 0.869 3.131 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.519 4.519 8 H 0.077 0.923 9 C -0.007 4.007 10 C -0.583 4.583 11 S 2.588 3.412 12 O -0.963 6.963 13 O -0.963 6.963 14 N -1.007 6.007 15 C 0.129 3.871 16 C 0.040 3.960 17 N -0.531 5.531 18 C 0.146 3.854 19 C 0.238 3.762 20 N -0.539 5.539 21 C 0.261 3.739 22 N -0.487 5.487 23 H 0.441 0.559 24 N -0.299 5.299 25 C 0.038 3.962 26 C 0.130 3.870 27 H 0.266 0.734 28 H 0.032 0.968 29 H 0.027 0.973 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.099 0.901 37 H 0.068 0.932 38 H 0.222 0.778 39 H 0.048 0.952 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.956 -22.535 3.550 26.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.131 4.131 3 Si 0.695 3.305 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.558 4.558 8 H 0.096 0.904 9 C -0.046 4.046 10 C -0.716 4.716 11 S 2.687 3.313 12 O -0.954 6.954 13 O -0.954 6.954 14 N -0.844 5.844 15 C 0.003 3.997 16 C -0.089 4.089 17 N -0.257 5.257 18 C 0.016 3.984 19 C -0.045 4.045 20 N -0.268 5.268 21 C -0.038 4.038 22 N -0.205 5.205 23 H 0.287 0.713 24 N -0.128 5.128 25 C -0.091 4.091 26 C 0.004 3.996 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.095 0.905 33 H 0.114 0.886 34 H 0.108 0.892 35 H 0.066 0.934 36 H 0.118 0.882 37 H 0.086 0.914 38 H 0.238 0.762 39 H 0.066 0.934 40 H 0.109 0.891 41 H 0.091 0.909 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 15.051 -21.653 2.985 26.538 hybrid contribution -0.716 -0.027 0.583 0.924 sum 14.334 -21.680 3.568 26.234 Atomic orbital electron populations 1.69883 1.06210 1.27247 1.50054 1.24988 0.94819 0.99167 0.94145 0.86925 0.80715 0.83687 0.79132 1.19664 1.20759 1.18605 1.20847 0.87827 0.94880 1.52202 0.90447 1.19405 0.99887 0.87507 0.97791 1.30355 1.21501 1.08975 1.10731 1.05761 0.79094 0.72331 0.74161 1.93542 1.78841 1.77735 1.45245 1.93539 1.78791 1.77713 1.45328 1.57994 1.85183 1.29595 1.11589 1.21433 1.00873 0.91996 0.85382 1.22549 0.98708 0.95158 0.92463 1.61789 1.58744 1.02170 1.02958 1.20271 0.96405 0.88075 0.93654 1.24046 0.91425 0.95761 0.93292 1.70464 1.30613 1.22076 1.03652 1.26120 0.86339 0.92062 0.99307 1.48186 1.27024 1.37122 1.08176 0.71349 1.78042 1.20158 1.15090 0.99539 1.22609 0.98487 0.94881 0.93169 1.21436 1.00693 0.92175 0.85261 0.92389 0.94986 0.95434 0.85805 0.85778 0.90528 0.88551 0.89237 0.93378 0.88241 0.91441 0.76158 0.93396 0.89084 0.90864 0.88752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.87 21.59 27.47 -169.99 -4.67 16.92 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.52 -14.53 9.66 -34.44 -0.33 -14.86 16 8 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 9 C -0.01 -0.16 4.05 -27.88 -0.11 -0.27 16 10 C -0.58 -10.75 6.12 37.16 0.23 -10.53 16 11 S 2.59 45.01 5.42 -107.50 -0.58 44.43 16 12 O -0.96 -19.20 16.79 -57.54 -0.97 -20.16 16 13 O -0.96 -18.92 16.80 -57.54 -0.97 -19.89 16 14 N -1.01 -13.65 3.26 -113.23 -0.37 -14.01 16 15 C 0.13 1.46 6.46 -3.60 -0.02 1.44 16 16 C 0.04 0.39 5.62 -3.70 -0.02 0.37 16 17 N -0.53 -5.52 4.62 -235.75 -1.09 -6.61 16 18 C 0.15 1.38 5.59 -4.97 -0.03 1.35 16 19 C 0.24 2.49 6.76 -156.86 -1.06 1.43 16 20 N -0.54 -5.34 10.24 -11.97 -0.12 -5.47 16 21 C 0.26 1.58 13.13 -90.65 -1.19 0.39 16 22 N -0.49 -3.02 7.45 29.53 0.22 -2.80 16 23 H 0.44 1.09 8.96 -182.33 -1.63 -0.55 16 24 N -0.30 -3.06 12.80 32.42 0.41 -2.64 16 25 C 0.04 0.42 5.47 -3.70 -0.02 0.40 16 26 C 0.13 1.60 6.46 -3.60 -0.02 1.57 16 27 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.03 0.77 7.20 -51.93 -0.37 0.39 16 29 H 0.03 0.65 7.57 -51.93 -0.39 0.25 16 30 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 31 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.10 1.07 7.20 -51.93 -0.37 0.69 16 34 H 0.09 0.66 7.99 -51.92 -0.41 0.25 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.10 0.79 7.97 -51.93 -0.41 0.38 16 37 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 38 H 0.22 0.24 8.06 -52.48 -0.42 -0.18 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.09 1.03 6.35 -51.93 -0.33 0.70 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.09 1.16 7.19 -51.93 -0.37 0.79 16 LS Contribution 356.11 15.07 5.37 5.37 Total: -1.00 -38.26 356.11 -11.95 -50.21 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -7.27 Total: -2.21 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -2.68 Total: -16.74 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: -0.17 Total: -57.92 kcal Atomic # 8 Polarization: -38.12 SS G_CDS: -1.93 Total: -40.05 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Atomic # 16 Polarization: 45.01 SS G_CDS: -0.58 Total: 44.43 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -38.26 -11.95 -50.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593652976.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.861 kcal (2) G-P(sol) polarization free energy of solvation -38.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds