Wall clock time and date at job start Tue Mar 31 2020 06:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00179 * 2 1 4 4 H 1.48501 * 109.47308 * 265.92835 * 3 2 1 5 5 H 1.48495 * 109.46916 * 25.93017 * 3 2 1 6 6 H 1.48504 * 109.46678 * 145.93003 * 3 2 1 7 7 C 1.38809 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99789 * 334.75326 * 7 2 1 9 9 N 1.36936 * 120.00484 * 154.75862 * 7 2 1 10 10 C 1.46967 * 120.59264 * 328.72555 * 9 7 2 11 11 C 1.53366 * 108.63772 * 235.20715 * 10 9 7 12 12 N 1.46965 * 108.63381 * 310.57297 * 11 10 9 13 13 C 1.34774 * 120.59589 * 235.20555 * 12 11 10 14 14 O 1.21529 * 120.00138 * 7.27083 * 13 12 11 15 15 C 1.48018 * 119.99941 * 187.27681 * 13 12 11 16 16 C 1.39430 * 119.64768 * 195.84250 * 15 13 12 17 17 C 1.38378 * 119.12939 * 180.02562 * 16 15 13 18 18 C 1.39260 * 118.43691 * 359.97438 * 17 16 15 19 19 N 1.39984 * 120.38750 * 179.97438 * 18 17 16 20 20 C 1.35133 * 127.39388 * 180.02562 * 19 18 17 21 21 N 1.30721 * 107.26417 * 180.02562 * 20 19 18 22 22 N 1.28421 * 110.65310 * 359.97438 * 21 20 19 23 23 N 1.28939 * 110.21663 * 0.02562 * 22 21 20 24 24 C 1.39235 * 119.22399 * 0.25450 * 18 17 16 25 25 N 1.31402 * 120.80419 * 359.46748 * 24 18 17 26 26 C 1.46963 * 118.81116 * 55.47938 * 12 11 10 27 27 C 1.46965 * 120.59861 * 148.70447 * 9 7 2 28 28 H 0.97011 * 119.99363 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.61198 * 115.45795 * 10 9 7 30 30 H 1.09004 * 109.74809 * 355.03847 * 10 9 7 31 31 H 1.08997 * 109.60876 * 190.83041 * 11 10 9 32 32 H 1.08993 * 109.61033 * 70.31752 * 11 10 9 33 33 H 1.07993 * 120.43589 * 359.97438 * 16 15 13 34 34 H 1.07997 * 120.77712 * 179.97438 * 17 16 15 35 35 H 1.08003 * 126.36882 * 359.75487 * 20 19 18 36 36 H 1.08005 * 119.60282 * 179.73087 * 24 18 17 37 37 H 1.09000 * 109.61255 * 64.26057 * 26 12 11 38 38 H 1.09004 * 109.61340 * 184.77784 * 26 12 11 39 39 H 1.08999 * 109.60924 * 244.54347 * 27 9 7 40 40 H 1.08997 * 109.60941 * 5.05260 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5839 1.9967 -1.3965 5 1 1.4073 2.6759 0.6122 6 1 3.5021 1.4664 0.7844 7 6 2.0102 -1.2021 -0.0005 8 1 1.5475 -2.0930 0.3980 9 7 3.2815 -1.2587 -0.5062 10 6 3.6888 -0.3738 -1.6067 11 6 4.2319 -1.2355 -2.7532 12 7 5.2137 -2.1818 -2.2050 13 6 6.4649 -2.2374 -2.7028 14 8 6.8311 -1.4152 -3.5194 15 6 7.3930 -3.3000 -2.2550 16 6 8.7592 -3.1718 -2.5024 17 6 9.6171 -4.1718 -2.0795 18 6 9.0778 -5.2728 -1.4191 19 7 9.9081 -6.3083 -0.9742 20 6 9.5394 -7.4339 -0.3237 21 7 10.6259 -8.1242 -0.0964 22 7 11.6561 -7.5127 -0.5590 23 7 11.3047 -6.4003 -1.1081 24 6 7.7023 -5.3345 -1.2116 25 7 6.9159 -4.3648 -1.6214 26 6 4.8048 -3.0707 -1.1084 27 6 4.2633 -2.2050 0.0420 28 1 -0.4850 0.8402 0.0004 29 1 4.4666 0.3067 -1.2602 30 1 2.8298 0.1998 -1.9553 31 1 4.7132 -0.5973 -3.4942 32 1 3.4132 -1.7855 -3.2170 33 1 9.1426 -2.3038 -3.0180 34 1 10.6799 -4.1000 -2.2575 35 1 8.5344 -7.7096 -0.0399 36 1 7.2770 -6.1876 -0.7040 37 1 4.0258 -3.7483 -1.4578 38 1 5.6646 -3.6447 -0.7628 39 1 5.0820 -1.6550 0.5058 40 1 3.7819 -2.8432 0.7829 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594294445.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:33 Heat of formation + Delta-G solvation = 191.272638 kcal Electronic energy + Delta-G solvation = -27318.805674 eV Core-core repulsion = 23367.166082 eV Total energy + Delta-G solvation = -3951.639592 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.78662 -41.36962 -39.45042 -37.19956 -36.16733 -34.20463 -33.23932 -32.67136 -31.67184 -31.36563 -30.47197 -27.57436 -26.15470 -25.26173 -23.92173 -23.61063 -22.83425 -22.78150 -21.20626 -19.71434 -19.31238 -17.77899 -17.30622 -17.22457 -16.77087 -16.57176 -15.76708 -15.64949 -15.23795 -14.91852 -14.51980 -14.34278 -14.32209 -14.21423 -13.92457 -13.51663 -13.29183 -12.98836 -12.89006 -12.70102 -12.48147 -12.18368 -11.94842 -11.61791 -11.23234 -11.09049 -10.90442 -10.62734 -10.59084 -10.42834 -10.34978 -10.20031 -9.71377 -9.56478 -9.40898 -8.83747 -8.38054 -7.00606 -6.09261 -3.44780 -0.57378 0.42155 0.75643 1.07299 1.70019 2.40591 2.90606 3.23981 3.26179 3.36287 3.42678 3.46849 3.47207 3.66370 3.84977 4.17650 4.20631 4.38172 4.44805 4.68721 4.75005 4.83987 4.92163 5.08410 5.21306 5.24619 5.50698 5.55721 5.62060 5.75533 5.81572 5.92485 6.00655 6.06770 6.32464 6.40447 6.48781 6.64031 6.77194 6.95608 7.53695 7.80478 7.85596 8.08954 8.22316 8.81419 9.59505 9.98289 11.06162 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.024377 B = 0.002714 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.363303 B =10315.302969 C =10981.059609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.033 3.967 3 Si 0.871 3.129 4 H -0.283 1.283 5 H -0.299 1.299 6 H -0.275 1.275 7 C -0.269 4.269 8 H 0.085 0.915 9 N -0.604 5.604 10 C 0.119 3.881 11 C 0.093 3.907 12 N -0.571 5.571 13 C 0.558 3.442 14 O -0.541 6.541 15 C 0.101 3.899 16 C -0.089 4.089 17 C -0.061 4.061 18 C 0.091 3.909 19 N -0.327 5.327 20 C 0.233 3.767 21 N -0.327 5.327 22 N -0.030 5.030 23 N -0.074 5.074 24 C 0.103 3.897 25 N -0.416 5.416 26 C 0.066 3.934 27 C 0.129 3.871 28 H 0.264 0.736 29 H 0.027 0.973 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.164 0.836 34 H 0.160 0.840 35 H 0.245 0.755 36 H 0.175 0.825 37 H 0.071 0.929 38 H 0.124 0.876 39 H 0.023 0.977 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.318 -12.332 -3.130 21.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.168 4.168 3 Si 0.700 3.300 4 H -0.210 1.210 5 H -0.227 1.227 6 H -0.200 1.200 7 C -0.397 4.397 8 H 0.102 0.898 9 N -0.327 5.327 10 C -0.007 4.007 11 C -0.031 4.031 12 N -0.301 5.301 13 C 0.344 3.656 14 O -0.419 6.419 15 C -0.037 4.037 16 C -0.111 4.111 17 C -0.088 4.088 18 C -0.005 4.005 19 N -0.118 5.118 20 C -0.064 4.064 21 N -0.175 5.175 22 N -0.025 5.025 23 N -0.059 5.059 24 C -0.059 4.059 25 N -0.127 5.127 26 C -0.058 4.058 27 C 0.003 3.997 28 H 0.074 0.926 29 H 0.045 0.955 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.182 0.818 34 H 0.178 0.822 35 H 0.261 0.739 36 H 0.192 0.808 37 H 0.090 0.910 38 H 0.141 0.859 39 H 0.041 0.959 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 17.820 -12.124 -3.413 21.822 hybrid contribution 0.241 1.337 -0.025 1.359 sum 18.061 -10.787 -3.439 21.316 Atomic orbital electron populations 1.69899 1.05878 1.26881 1.51067 1.25367 0.95113 0.97582 0.98706 0.87110 0.80086 0.84936 0.77888 1.20978 1.22679 1.19981 1.18840 0.87487 0.95065 1.38277 0.89788 1.44331 1.10140 1.42574 1.35704 1.21709 0.98565 0.92447 0.87983 1.22396 0.90699 0.92334 0.97647 1.47950 1.10035 1.37408 1.34681 1.17727 0.81924 0.83725 0.82247 1.90787 1.75869 1.40185 1.35060 1.21616 0.93063 0.93495 0.95510 1.22132 0.92044 0.99613 0.97268 1.21465 1.02230 0.90740 0.94402 1.18894 0.90305 0.89089 1.02191 1.48976 1.07166 1.15908 1.39702 1.27624 1.02691 0.83347 0.92696 1.74539 0.94747 1.26258 1.21935 1.78123 1.20059 0.98968 1.05367 1.82711 0.86855 1.15791 1.20573 1.22889 0.86552 0.98183 0.98320 1.68062 1.36161 1.00475 1.08012 1.23427 1.02215 0.92632 0.87496 1.21509 0.92193 0.92280 0.93736 0.92575 0.95538 0.89567 0.89564 0.90584 0.81797 0.82221 0.73928 0.80798 0.91025 0.85928 0.95908 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.28 13.97 55.49 0.78 -25.51 16 2 C 0.03 0.91 5.09 -17.43 -0.09 0.82 16 3 Si 0.87 21.47 24.95 -169.99 -4.24 17.23 16 4 H -0.28 -6.67 6.43 56.52 0.36 -6.30 16 5 H -0.30 -7.52 7.11 56.52 0.40 -7.11 16 6 H -0.27 -6.83 7.11 56.52 0.40 -6.42 16 7 C -0.27 -7.08 9.94 -15.06 -0.15 -7.23 16 8 H 0.08 2.35 8.06 -52.48 -0.42 1.93 16 9 N -0.60 -13.50 2.65 -171.76 -0.46 -13.96 16 10 C 0.12 2.50 4.42 -3.60 -0.02 2.49 16 11 C 0.09 1.64 6.60 -3.60 -0.02 1.61 16 12 N -0.57 -9.18 2.94 -173.27 -0.51 -9.69 16 13 C 0.56 8.39 7.62 -12.25 -0.09 8.30 16 14 O -0.54 -9.36 15.85 5.34 0.08 -9.27 16 15 C 0.10 1.13 6.48 -83.01 -0.54 0.59 16 16 C -0.09 -0.78 9.62 -39.09 -0.38 -1.16 16 17 C -0.06 -0.44 9.81 -39.15 -0.38 -0.82 16 18 C 0.09 0.62 6.73 -83.38 -0.56 0.06 16 19 N -0.33 -2.39 3.85 -11.59 -0.04 -2.44 16 20 C 0.23 1.30 12.17 -90.11 -1.10 0.20 16 21 N -0.33 -3.01 12.15 29.65 0.36 -2.65 16 22 N -0.03 -0.33 13.39 60.35 0.81 0.48 16 23 N -0.07 -0.74 13.40 60.35 0.81 0.07 16 24 C 0.10 0.64 10.65 -17.36 -0.18 0.45 16 25 N -0.42 -3.93 6.31 -9.66 -0.06 -4.00 16 26 C 0.07 0.97 6.07 -3.37 -0.02 0.95 16 27 C 0.13 2.32 6.69 -3.36 -0.02 2.30 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.03 0.57 7.50 -51.93 -0.39 0.18 16 30 H 0.09 1.95 5.06 -51.93 -0.26 1.69 16 31 H 0.09 1.47 6.99 -51.93 -0.36 1.11 16 32 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.16 1.33 7.72 -52.49 -0.41 0.93 16 34 H 0.16 0.95 7.84 -52.49 -0.41 0.53 16 35 H 0.24 -0.03 7.20 -52.48 -0.38 -0.41 16 36 H 0.18 0.36 6.89 -52.48 -0.36 -0.01 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.12 1.50 4.13 -75.43 -0.31 1.18 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 1.31 7.93 -51.93 -0.41 0.89 16 LS Contribution 334.05 15.07 5.03 5.03 Total: -1.00 -34.19 334.05 -5.16 -39.35 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -4.16 Total: -3.21 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: -3.55 Total: 8.56 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: 1.68 Total: -57.69 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.08 Total: -9.27 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.24 Total: 17.23 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.19 -5.16 -39.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594294445.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 230.622 kcal (2) G-P(sol) polarization free energy of solvation -34.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 196.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 191.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds