Wall clock time and date at job start Tue Mar 31 2020 05:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 N 1.46505 * 109.46878 * 179.97438 * 3 2 1 5 5 N 1.40077 * 126.03682 * 269.68838 * 4 3 2 6 6 C 1.30837 * 108.20212 * 179.85441 * 5 4 3 7 7 C 1.39866 * 108.20639 * 0.40623 * 6 5 4 8 8 C 1.34949 * 126.03350 * 89.99797 * 4 3 2 9 9 S 1.76195 * 126.12848 * 359.95995 * 8 4 3 10 10 O 1.42109 * 106.40265 * 203.53710 * 9 8 4 11 11 O 1.42097 * 106.40391 * 336.45854 * 9 8 4 12 12 N 1.65605 * 107.22016 * 89.99947 * 9 8 4 13 13 C 1.46928 * 120.62807 * 269.71889 * 12 9 8 14 14 C 1.52762 * 109.00699 * 233.58467 * 13 12 9 15 15 C 1.53044 * 109.38206 * 305.58800 * 14 13 12 16 16 C 1.53038 * 109.53859 * 61.24153 * 15 14 13 17 17 H 1.09005 * 109.52513 * 58.60111 * 16 15 14 18 18 C 1.50694 * 109.49844 * 178.68136 * 16 15 14 19 19 H 1.08008 * 120.00130 * 119.83668 * 18 16 15 20 20 C 1.37873 * 120.00549 * 299.83889 * 18 16 15 21 21 N 1.31521 * 119.99217 * 0.02562 * 20 18 16 22 22 Si 1.86795 * 120.00614 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47033 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47346 * 120.00128 * 22 20 18 25 25 H 1.48501 * 109.47271 * 240.00520 * 22 20 18 26 26 C 1.46916 * 120.63058 * 89.99680 * 12 9 8 27 27 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 28 28 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 30 30 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 31 31 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 32 32 H 1.08010 * 125.89698 * 180.14612 * 6 5 4 33 33 H 1.08001 * 126.04407 * 179.74166 * 7 6 5 34 34 H 1.09008 * 109.58460 * 353.41909 * 13 12 9 35 35 H 1.08997 * 109.58376 * 113.84319 * 13 12 9 36 36 H 1.08996 * 109.56412 * 185.55552 * 14 13 12 37 37 H 1.08999 * 109.36034 * 65.49604 * 14 13 12 38 38 H 1.08998 * 109.45962 * 301.22427 * 15 14 13 39 39 H 1.08997 * 109.44811 * 181.25673 * 15 14 13 40 40 H 0.97001 * 119.99313 * 180.02562 * 21 20 18 41 41 H 1.09000 * 109.58846 * 246.15605 * 26 12 9 42 42 H 1.09002 * 109.59000 * 6.58633 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 7 3.4706 1.1899 0.0006 5 7 4.2921 1.1312 1.1337 6 6 5.5335 1.0275 0.7335 7 6 5.5431 1.0262 -0.6651 8 6 4.2624 1.1270 -1.0903 9 16 3.7250 1.1682 -2.7678 10 8 4.7461 0.5414 -3.5319 11 8 2.3738 0.7283 -2.7672 12 7 3.6994 2.7567 -3.2355 13 6 2.4859 3.5675 -3.0658 14 6 2.1187 4.2002 -4.4068 15 6 3.3219 4.9748 -4.9494 16 6 4.4918 4.0134 -5.1712 17 1 4.1935 3.2316 -5.8698 18 6 5.6656 4.7713 -5.7359 19 1 6.6006 4.7994 -5.1960 20 6 5.5460 5.4291 -6.9417 21 7 4.4072 5.3954 -7.5989 22 14 7.0007 6.3691 -7.6413 23 1 8.1558 6.2543 -6.7152 24 1 7.3673 5.8014 -8.9635 25 1 6.6352 7.7996 -7.8009 26 6 4.8877 3.3801 -3.8336 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6885 1.8465 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 6.4014 0.9592 1.3728 33 1 6.4180 0.9569 -1.2946 34 1 1.6671 2.9331 -2.7261 35 1 2.6708 4.3528 -2.3328 36 1 1.2787 4.8813 -4.2712 37 1 1.8422 3.4167 -5.1124 38 1 3.6134 5.7420 -4.2321 39 1 3.0541 5.4452 -5.8955 40 1 4.3232 5.8578 -8.4474 41 1 5.2724 4.1498 -3.1645 42 1 5.6531 2.6222 -4.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594807559.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:43 Heat of formation + Delta-G solvation = -27.998054 kcal Electronic energy + Delta-G solvation = -27526.830423 eV Core-core repulsion = 23636.540989 eV Total energy + Delta-G solvation = -3890.289434 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.36801 -38.12904 -37.85760 -37.16218 -35.75526 -33.39952 -32.76525 -31.25712 -30.58762 -30.19972 -27.43238 -25.56133 -25.18591 -23.78210 -22.26489 -21.82116 -21.46884 -19.64535 -18.88647 -17.79939 -17.59424 -16.96564 -16.26256 -16.06795 -15.80570 -15.56113 -14.74721 -14.71240 -14.51322 -14.15613 -13.86088 -13.57630 -13.47627 -13.30065 -12.92971 -12.79618 -12.68330 -12.25503 -11.98302 -11.88634 -11.79606 -11.62690 -11.48984 -11.02319 -10.95279 -10.92259 -10.73301 -10.31242 -10.07562 -10.02555 -9.97925 -9.89474 -9.46068 -9.10830 -8.89012 -8.54847 -8.28181 -6.04942 -4.12299 0.33837 1.05430 1.97571 2.45241 3.11756 3.27258 3.35986 3.39303 3.70544 3.77268 4.12949 4.37967 4.42888 4.63400 4.84112 5.02774 5.05633 5.15642 5.20664 5.24517 5.25733 5.45488 5.54022 5.58410 5.64004 5.88614 6.12121 6.24045 6.29027 6.36822 6.38292 6.50451 6.54629 6.74883 6.80261 6.89067 7.13483 7.25911 7.36158 7.66721 7.89738 8.03900 8.33870 8.91064 9.52886 11.00713 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.019671 B = 0.003871 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.054552 B = 7231.236339 C = 7943.794001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.395 6.395 3 C 0.300 3.700 4 N -0.314 5.314 5 N -0.254 5.254 6 C 0.036 3.964 7 C -0.149 4.149 8 C -0.478 4.478 9 S 2.696 3.304 10 O -0.933 6.933 11 O -0.950 6.950 12 N -0.983 5.983 13 C 0.121 3.879 14 C -0.130 4.130 15 C -0.111 4.111 16 C 0.042 3.958 17 H 0.034 0.966 18 C -0.515 4.515 19 H 0.059 0.941 20 C 0.064 3.936 21 N -0.887 5.887 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.285 1.285 26 C 0.121 3.879 27 H 0.055 0.945 28 H 0.093 0.907 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.196 0.804 33 H 0.168 0.832 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.036 0.964 39 H 0.096 0.904 40 H 0.260 0.740 41 H 0.060 0.940 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.778 -5.538 15.072 17.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.312 6.312 3 C 0.140 3.860 4 N -0.102 5.102 5 N -0.077 5.077 6 C -0.150 4.150 7 C -0.181 4.181 8 C -0.683 4.683 9 S 2.780 3.220 10 O -0.922 6.922 11 O -0.940 6.940 12 N -0.824 5.824 13 C -0.005 4.005 14 C -0.169 4.169 15 C -0.149 4.149 16 C 0.022 3.978 17 H 0.052 0.948 18 C -0.554 4.554 19 H 0.077 0.923 20 C -0.138 4.138 21 N -0.526 5.526 22 Si 0.721 3.279 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.211 1.211 26 C -0.002 4.002 27 H 0.074 0.926 28 H 0.112 0.888 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.213 0.787 33 H 0.185 0.815 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.115 0.885 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.905 -6.313 15.478 18.085 hybrid contribution 1.438 0.938 -0.350 1.752 sum -5.466 -5.375 15.127 16.959 Atomic orbital electron populations 1.22750 0.78443 1.03765 1.00611 1.87851 1.21265 1.26659 1.95448 1.22521 0.73650 0.86586 1.03278 1.48115 1.05462 1.54637 1.02026 1.77222 1.02292 1.19264 1.08940 1.24179 0.95379 1.00515 0.94977 1.21714 0.95762 1.05043 0.95574 1.34241 1.00527 1.16039 1.17505 1.02294 0.73887 0.73426 0.72439 1.93626 1.59560 1.73480 1.65577 1.93567 1.34209 1.79814 1.86376 1.57674 1.21252 1.29742 1.73775 1.21440 0.84876 0.94523 0.99614 1.21877 0.99858 0.99933 0.95274 1.21608 0.93643 0.97927 1.01717 1.18963 0.94481 0.94616 0.89740 0.94815 1.21108 0.97426 1.31802 1.05078 0.92270 1.24938 0.95824 0.96347 0.96698 1.69885 1.24201 1.43296 1.15221 0.86520 0.82794 0.79502 0.79067 1.19714 1.21008 1.21110 1.21982 0.83965 0.97180 0.97059 0.92624 0.88812 0.93727 0.89061 0.88734 0.78707 0.81456 0.90701 0.91950 0.92252 0.92031 0.94490 0.88539 0.92972 0.92145 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 11.01 101.05 1.11 1.48 16 2 O -0.39 -5.35 10.87 -35.23 -0.38 -5.73 16 3 C 0.30 3.76 6.33 59.85 0.38 4.13 16 4 N -0.31 -4.67 3.88 -65.25 -0.25 -4.92 16 5 N -0.25 -3.67 12.58 30.63 0.39 -3.29 16 6 C 0.04 0.44 12.02 -17.37 -0.21 0.23 16 7 C -0.15 -2.04 10.55 -40.01 -0.42 -2.46 16 8 C -0.48 -7.33 7.00 -17.22 -0.12 -7.45 16 9 S 2.70 45.39 5.68 -107.50 -0.61 44.78 16 10 O -0.93 -18.20 16.44 -57.17 -0.94 -19.14 16 11 O -0.95 -16.49 14.32 -57.18 -0.82 -17.31 16 12 N -0.98 -16.60 3.30 -113.76 -0.37 -16.98 16 13 C 0.12 1.80 6.45 -3.93 -0.03 1.78 16 14 C -0.13 -2.24 6.07 -26.83 -0.16 -2.41 16 15 C -0.11 -2.37 4.96 -26.69 -0.13 -2.51 16 16 C 0.04 0.98 2.25 -91.65 -0.21 0.78 16 17 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 18 C -0.52 -13.28 8.56 -34.44 -0.29 -13.58 16 19 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 20 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 21 N -0.89 -24.20 11.32 55.43 0.63 -23.58 16 22 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C 0.12 2.35 5.70 -3.71 -0.02 2.32 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.10 1.09 5.69 -51.93 -0.30 0.79 16 32 H 0.20 1.54 8.06 -52.48 -0.42 1.11 16 33 H 0.17 1.96 8.06 -52.49 -0.42 1.53 16 34 H 0.07 0.96 5.91 -51.92 -0.31 0.65 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.10 2.36 6.05 -51.93 -0.31 2.05 16 40 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.08 1.59 6.92 -51.93 -0.36 1.23 16 LS Contribution 353.60 15.07 5.33 5.33 Total: -1.00 -32.74 353.60 -8.15 -40.88 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -5.89 Total: 0.64 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -0.20 Total: -16.10 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.38 Total: -48.77 kcal Atomic # 8 Polarization: -40.05 SS G_CDS: -2.14 Total: -42.19 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 45.39 SS G_CDS: -0.61 Total: 44.78 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.74 -8.15 -40.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594807559.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.886 kcal (2) G-P(sol) polarization free energy of solvation -32.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds