Wall clock time and date at job start Tue Mar 31 2020 06:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 119.99686 * 2 1 4 4 H 1.48498 * 109.47101 * 275.31307 * 3 2 1 5 5 H 1.48508 * 109.46866 * 35.31140 * 3 2 1 6 6 H 1.48500 * 109.47197 * 155.31281 * 3 2 1 7 7 C 1.38812 * 120.00605 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99810 * 344.87022 * 7 2 1 9 9 N 1.36934 * 120.00153 * 164.60149 * 7 2 1 10 10 C 1.46971 * 120.59337 * 152.72857 * 9 7 2 11 11 C 1.53810 * 108.39252 * 124.75831 * 10 9 7 12 12 N 1.46957 * 108.58273 * 49.64306 * 11 10 9 13 13 C 1.34775 * 120.59905 * 124.66610 * 12 11 10 14 14 O 1.21282 * 119.99939 * 183.22198 * 13 12 11 15 15 C 1.50698 * 120.00168 * 3.21950 * 13 12 11 16 16 H 1.09003 * 109.35715 * 309.66248 * 15 13 12 17 17 C 1.52651 * 109.36298 * 69.39164 * 15 13 12 18 18 N 1.45840 * 111.14481 * 69.57466 * 17 15 13 19 19 C 1.34677 * 120.99157 * 40.23727 * 18 17 15 20 20 O 1.21546 * 120.33132 * 172.03741 * 19 18 17 21 21 C 1.47824 * 119.32624 * 352.06304 * 19 18 17 22 22 C 1.39321 * 120.93197 * 166.30582 * 21 19 18 23 23 C 1.38064 * 119.60167 * 181.67679 * 22 21 19 24 24 C 1.38376 * 120.17530 * 359.97438 * 23 22 21 25 25 C 1.38420 * 120.41369 * 359.65422 * 24 23 22 26 26 C 1.37836 * 119.96686 * 0.06779 * 25 24 23 27 27 C 1.46969 * 118.80807 * 304.64082 * 12 11 10 28 28 C 1.46964 * 120.59551 * 333.01330 * 9 7 2 29 29 H 0.96995 * 120.00378 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.60806 * 244.54202 * 10 9 7 31 31 H 1.08994 * 109.60853 * 5.05108 * 10 9 7 32 32 H 1.08997 * 109.74335 * 289.84615 * 11 10 9 33 33 H 1.09003 * 109.66948 * 169.38969 * 11 10 9 34 34 H 1.08997 * 109.17789 * 190.07149 * 17 15 13 35 35 H 1.09000 * 109.17543 * 309.29890 * 17 15 13 36 36 H 0.96998 * 119.53858 * 220.22034 * 18 17 15 37 37 H 1.07999 * 120.19473 * 1.66278 * 22 21 19 38 38 H 1.08000 * 119.90724 * 179.97438 * 23 22 21 39 39 H 1.08001 * 119.79647 * 179.67607 * 24 23 22 40 40 H 1.07998 * 120.01828 * 180.02562 * 25 24 23 41 41 H 1.09002 * 109.61423 * 295.48296 * 27 12 11 42 42 H 1.09006 * 109.60938 * 174.97441 * 27 12 11 43 43 H 1.09005 * 109.60734 * 354.94717 * 28 9 7 44 44 H 1.08994 * 109.61443 * 115.28655 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3853 2.1113 -1.3940 5 1 1.5081 2.6177 0.8093 6 1 3.5993 1.4106 0.5848 7 6 2.0104 -1.2021 0.0005 8 1 1.4985 -2.1211 0.2451 9 7 3.3429 -1.2234 -0.3143 10 6 4.2216 -2.2722 0.2223 11 6 4.9217 -2.9689 -0.9567 12 7 5.5000 -1.9400 -1.8323 13 6 6.8115 -1.9610 -2.1422 14 8 7.2892 -1.0742 -2.8178 15 6 7.6843 -3.0862 -1.6493 16 1 7.5372 -3.2144 -0.5769 17 6 7.3023 -4.3763 -2.3704 18 7 7.6874 -4.3271 -3.7761 19 6 8.8611 -3.7863 -4.1551 20 8 9.2363 -3.8794 -5.3075 21 6 9.6888 -3.0790 -3.1552 22 6 11.0171 -2.7560 -3.4243 23 6 11.7751 -2.1261 -2.4576 24 6 11.2183 -1.8170 -1.2291 25 6 9.8969 -2.1291 -0.9602 26 6 9.1279 -2.7529 -1.9191 27 6 4.6224 -0.8880 -2.3644 28 6 3.9211 -0.1944 -1.1899 29 1 -0.4850 0.8400 -0.0004 30 1 4.9660 -1.8242 0.8805 31 1 3.6278 -2.9979 0.7779 32 1 4.1982 -3.5613 -1.5166 33 1 5.7136 -3.6174 -0.5818 34 1 7.8041 -5.2167 -1.8907 35 1 6.2237 -4.5184 -2.3026 36 1 7.0897 -4.6895 -4.4487 37 1 11.4511 -2.9973 -4.3834 38 1 12.8054 -1.8738 -2.6608 39 1 11.8184 -1.3288 -0.4754 40 1 9.4687 -1.8845 0.0007 41 1 3.8775 -1.3322 -3.0246 42 1 5.2170 -0.1604 -2.9168 43 1 3.1288 0.4523 -1.5672 44 1 4.6424 0.3999 -0.6292 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599538465.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:37 Heat of formation + Delta-G solvation = 4.054857 kcal Electronic energy + Delta-G solvation = -28900.575315 eV Core-core repulsion = 25012.064943 eV Total energy + Delta-G solvation = -3888.510372 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.36040 -39.58656 -38.33347 -37.23675 -36.17140 -34.16427 -32.53212 -31.56790 -31.25947 -31.01742 -29.43563 -27.28400 -24.90194 -24.20009 -23.81007 -23.40263 -22.06067 -21.08963 -19.99210 -18.66628 -17.93658 -17.50136 -17.09874 -16.49366 -16.11842 -15.90689 -15.39131 -15.14351 -14.88766 -14.71857 -14.60348 -14.38188 -14.06138 -13.86892 -13.70302 -13.51501 -12.98530 -12.86463 -12.69730 -12.48982 -12.39472 -12.20241 -12.03472 -11.69754 -11.32914 -11.25597 -11.04984 -10.56142 -10.25072 -10.13716 -10.08129 -9.79554 -9.55414 -9.39361 -9.15482 -9.02985 -8.92813 -8.44954 -7.10327 -6.05431 -3.47182 0.63903 1.10082 2.61538 2.67690 2.95947 3.09103 3.23230 3.39417 3.41583 3.66742 4.07081 4.27224 4.32962 4.39866 4.48485 4.60477 4.71344 4.78320 4.95230 4.96834 5.11881 5.18013 5.18825 5.27862 5.34546 5.40753 5.55092 5.57753 5.70099 5.74268 5.87356 5.98290 6.04847 6.08069 6.13159 6.20112 6.25939 6.36228 6.54969 6.56321 6.67755 6.72890 6.93456 7.55601 7.78093 7.99521 8.19289 8.24320 8.76224 9.56878 9.91189 11.10003 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.020998 B = 0.003440 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.125596 B = 8136.807343 C = 8571.959475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.024 3.976 3 Si 0.887 3.113 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.268 1.268 7 C -0.266 4.266 8 H 0.090 0.910 9 N -0.606 5.606 10 C 0.136 3.864 11 C 0.082 3.918 12 N -0.597 5.597 13 C 0.517 3.483 14 O -0.535 6.535 15 C -0.093 4.093 16 H 0.126 0.874 17 C 0.120 3.880 18 N -0.724 5.724 19 C 0.571 3.429 20 O -0.536 6.536 21 C -0.121 4.121 22 C -0.059 4.059 23 C -0.129 4.129 24 C -0.091 4.091 25 C -0.115 4.115 26 C -0.025 4.025 27 C 0.096 3.904 28 C 0.112 3.888 29 H 0.264 0.736 30 H 0.029 0.971 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.408 0.592 37 H 0.135 0.865 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.769 -9.820 -0.662 22.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.175 4.175 3 Si 0.719 3.281 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.193 1.193 7 C -0.394 4.394 8 H 0.107 0.893 9 N -0.330 5.330 10 C 0.009 3.991 11 C -0.043 4.043 12 N -0.330 5.330 13 C 0.303 3.697 14 O -0.412 6.412 15 C -0.115 4.115 16 H 0.144 0.856 17 C -0.005 4.005 18 N -0.377 5.377 19 C 0.360 3.640 20 O -0.414 6.414 21 C -0.124 4.124 22 C -0.078 4.078 23 C -0.147 4.147 24 C -0.109 4.109 25 C -0.133 4.133 26 C -0.026 4.026 27 C -0.027 4.027 28 C -0.014 4.014 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.117 0.883 36 H 0.245 0.755 37 H 0.153 0.847 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 20.132 -9.229 -1.454 22.194 hybrid contribution -0.114 0.975 -0.057 0.983 sum 20.019 -8.254 -1.511 21.706 Atomic orbital electron populations 1.69763 1.05631 1.26698 1.53118 1.25275 0.95304 0.97717 0.99241 0.86946 0.79915 0.84337 0.76944 1.21634 1.23117 1.19277 1.18933 0.82181 0.94557 1.43728 0.89292 1.44279 1.06259 1.29348 1.53080 1.21374 0.93307 0.91982 0.92470 1.22632 0.97877 0.90259 0.93516 1.47987 1.07440 1.29015 1.48533 1.20127 0.82159 0.86603 0.80795 1.90714 1.73050 1.38259 1.39145 1.20686 0.92174 0.95385 1.03276 0.85638 1.21337 1.02239 0.95517 0.81428 1.45506 1.20551 1.62722 1.08922 1.18202 0.80837 0.77439 0.87548 1.90787 1.71353 1.59434 1.19831 1.19603 0.95331 1.03358 0.94091 1.21169 0.92174 0.95149 0.99306 1.21160 1.00299 0.99677 0.93596 1.21322 0.94960 0.97652 0.97003 1.20936 0.94207 0.98852 0.99348 1.19361 0.93168 0.96950 0.93098 1.22258 0.92660 0.90384 0.97419 1.21808 0.96639 0.92087 0.90850 0.92576 0.95286 0.90309 0.90748 0.90492 0.89982 0.88290 0.75544 0.84701 0.85268 0.85390 0.85270 0.91078 0.89702 0.90220 0.94638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.91 13.97 55.49 0.78 -26.14 16 2 C 0.02 0.66 5.34 -17.43 -0.09 0.57 16 3 Si 0.89 21.73 24.29 -169.99 -4.13 17.60 16 4 H -0.29 -6.89 6.75 56.52 0.38 -6.51 16 5 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 6 H -0.27 -6.40 5.95 56.52 0.34 -6.06 16 7 C -0.27 -6.92 10.09 -15.06 -0.15 -7.08 16 8 H 0.09 2.45 8.06 -52.49 -0.42 2.03 16 9 N -0.61 -13.14 2.77 -171.77 -0.48 -13.62 16 10 C 0.14 2.22 6.70 -3.36 -0.02 2.20 16 11 C 0.08 1.03 5.20 -3.37 -0.02 1.01 16 12 N -0.60 -9.07 2.95 -172.22 -0.51 -9.58 16 13 C 0.52 7.76 6.82 -10.99 -0.07 7.68 16 14 O -0.54 -10.23 15.45 5.56 0.09 -10.15 16 15 C -0.09 -0.99 1.89 -93.16 -0.18 -1.17 16 16 H 0.13 0.97 6.97 -51.93 -0.36 0.61 16 17 C 0.12 1.02 5.94 -4.58 -0.03 0.99 16 18 N -0.72 -8.03 5.43 -61.92 -0.34 -8.37 16 19 C 0.57 8.18 7.81 -12.38 -0.10 8.09 16 20 O -0.54 -9.27 17.37 5.33 0.09 -9.18 16 21 C -0.12 -1.60 5.77 -105.06 -0.61 -2.21 16 22 C -0.06 -0.69 9.64 -39.24 -0.38 -1.07 16 23 C -0.13 -1.22 10.04 -39.59 -0.40 -1.62 16 24 C -0.09 -0.83 10.04 -39.46 -0.40 -1.23 16 25 C -0.12 -1.19 9.72 -39.66 -0.39 -1.57 16 26 C -0.02 -0.29 4.20 -104.31 -0.44 -0.73 16 27 C 0.10 1.73 6.60 -3.59 -0.02 1.70 16 28 C 0.11 2.35 4.29 -3.60 -0.02 2.33 16 29 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 1.23 7.93 -51.93 -0.41 0.81 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 0.65 5.01 -51.93 -0.26 0.39 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.10 0.70 6.18 -51.93 -0.32 0.38 16 36 H 0.41 4.00 8.92 -40.82 -0.36 3.63 16 37 H 0.14 1.51 7.78 -52.49 -0.41 1.10 16 38 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 39 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.08 1.55 6.99 -51.93 -0.36 1.19 16 43 H 0.08 1.83 4.00 -51.93 -0.21 1.62 16 44 H 0.04 0.77 6.83 -51.93 -0.35 0.41 16 LS Contribution 345.85 15.07 5.21 5.21 Total: -1.00 -35.58 345.85 -8.24 -43.82 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -5.66 Total: 2.50 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: -3.30 Total: 7.89 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: -0.55 Total: -57.70 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: 0.18 Total: -19.32 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.13 Total: 17.60 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.58 -8.24 -43.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599538465.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.874 kcal (2) G-P(sol) polarization free energy of solvation -35.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds