Wall clock time and date at job start Tue Mar 31 2020 05:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46507 * 119.99894 * 2 1 4 4 C 1.50707 * 109.46795 * 275.00123 * 3 2 1 5 5 H 1.07996 * 120.00130 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99712 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00034 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99834 * 179.97438 * 6 4 3 9 9 H 1.48509 * 109.47241 * 89.99336 * 8 6 4 10 10 H 1.48502 * 109.47239 * 209.99283 * 8 6 4 11 11 H 1.48498 * 109.47057 * 329.99740 * 8 6 4 12 12 S 1.65596 * 120.00258 * 179.97438 * 2 1 3 13 13 O 1.42106 * 106.40069 * 336.45647 * 12 2 1 14 14 O 1.42101 * 106.40310 * 203.54381 * 12 2 1 15 15 N 1.65592 * 107.22112 * 89.99865 * 12 2 1 16 16 C 1.46931 * 120.63004 * 89.99741 * 15 12 2 17 17 C 1.53200 * 108.77279 * 126.41574 * 16 15 12 18 18 C 1.53039 * 109.31160 * 54.63574 * 17 16 15 19 19 C 1.50701 * 109.45760 * 178.62975 * 18 17 16 20 20 N 1.30261 * 125.61452 * 240.02628 * 19 18 17 21 21 C 1.34477 * 108.69628 * 179.97438 * 20 19 18 22 22 C 1.34329 * 107.67020 * 0.02562 * 21 20 19 23 23 O 1.33968 * 125.62174 * 59.71984 * 19 18 17 24 24 C 1.53046 * 109.52798 * 298.64112 * 18 17 16 25 25 C 1.46928 * 120.63204 * 270.02291 * 15 12 2 26 26 H 1.09002 * 109.47473 * 270.00541 * 1 2 3 27 27 H 1.09002 * 109.47277 * 30.00217 * 1 2 3 28 28 H 1.09003 * 109.47286 * 150.00391 * 1 2 3 29 29 H 1.08998 * 109.47077 * 34.99545 * 3 2 1 30 30 H 1.08992 * 109.47126 * 154.99684 * 3 2 1 31 31 H 0.97002 * 119.99631 * 180.02562 * 7 6 4 32 32 H 1.08998 * 109.58425 * 6.63524 * 16 15 12 33 33 H 1.08995 * 109.70793 * 246.27142 * 16 15 12 34 34 H 1.08997 * 109.49280 * 294.68615 * 17 16 15 35 35 H 1.08996 * 109.52417 * 174.60413 * 17 16 15 36 36 H 1.09002 * 109.46050 * 58.65698 * 18 17 16 37 37 H 1.07999 * 126.16394 * 180.02562 * 21 20 19 38 38 H 1.08005 * 126.44372 * 180.02562 * 22 21 20 39 39 H 1.08996 * 109.49379 * 181.30938 * 24 18 17 40 40 H 1.08994 * 109.49581 * 301.40708 * 24 18 17 41 41 H 1.08999 * 109.58766 * 353.37594 * 25 15 12 42 42 H 1.09002 * 109.58364 * 113.65690 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3413 1.7657 -1.4155 5 1 1.9288 1.1935 -2.2332 6 6 3.0005 2.9504 -1.6665 7 7 3.5033 3.6470 -0.6707 8 14 3.1795 3.5660 -3.4211 9 1 2.0190 4.4268 -3.7645 10 1 4.4329 4.3527 -3.5443 11 1 3.2285 2.4080 -4.3494 12 16 2.2930 -1.4341 0.0006 13 8 1.4113 -2.4062 0.5456 14 8 3.5759 -1.1564 0.5450 15 7 2.5381 -1.8593 -1.5808 16 6 3.7438 -1.4194 -2.2961 17 6 4.4357 -2.6468 -2.8977 18 6 3.4366 -3.4170 -3.7642 19 6 4.1229 -4.6066 -4.3846 20 7 4.2502 -4.8279 -5.6619 21 6 4.9172 -5.9828 -5.8349 22 6 5.2017 -6.4755 -4.6181 23 8 4.7076 -5.6078 -3.7134 24 6 2.2702 -3.8962 -2.8969 25 6 1.5538 -2.6834 -2.2957 26 1 -0.3634 0.0001 1.0277 27 1 -0.3634 0.8900 -0.5139 28 1 -0.3634 -0.8900 -0.5138 29 1 1.6500 2.0044 0.5894 30 1 3.1856 1.1178 0.4343 31 1 3.9667 4.4806 -0.8474 32 1 4.4204 -0.9228 -1.6007 33 1 3.4671 -0.7289 -3.0928 34 1 4.7944 -3.2916 -2.0955 35 1 5.2778 -2.3262 -3.5109 36 1 3.0596 -2.7639 -4.5513 37 1 5.1772 -6.4329 -6.7816 38 1 5.7315 -7.3922 -4.4050 39 1 1.5707 -4.4645 -3.5099 40 1 2.6494 -4.5294 -2.0949 41 1 0.7855 -3.0206 -1.6000 42 1 1.0945 -2.0963 -3.0909 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601496446.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:56 Heat of formation + Delta-G solvation = -52.115591 kcal Electronic energy + Delta-G solvation = -27371.291401 eV Core-core repulsion = 23479.956152 eV Total energy + Delta-G solvation = -3891.335249 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.46791 -38.49919 -36.73776 -35.48409 -35.23254 -34.86541 -33.31124 -32.50021 -31.05811 -29.54597 -27.80120 -25.19022 -24.95047 -23.33332 -22.77693 -22.28558 -21.60630 -20.28667 -18.44263 -17.72185 -17.19799 -16.75647 -16.67824 -16.38836 -15.70281 -15.19206 -14.89964 -14.85110 -14.43069 -14.26803 -13.77186 -13.59139 -13.34321 -13.27742 -13.15412 -12.42351 -12.36660 -12.18189 -11.97320 -11.72494 -11.57446 -11.46026 -11.28054 -11.19726 -11.14137 -11.13323 -10.80085 -10.73122 -10.72606 -10.58104 -10.47880 -10.07697 -9.79581 -9.02718 -8.78122 -8.51345 -8.04650 -6.12920 -4.19945 1.22158 1.31549 2.54011 2.61923 3.23658 3.31420 3.32231 3.42492 3.82502 4.08555 4.34638 4.57217 4.67219 4.78326 4.86826 4.92318 5.07820 5.21087 5.22757 5.23139 5.42446 5.48652 5.57506 5.62515 5.69185 5.74876 5.78815 5.88646 5.99034 6.06327 6.08781 6.12640 6.23369 6.36864 6.41435 6.54814 6.86824 7.32292 7.42060 7.60035 7.61765 7.83923 8.13163 8.85287 9.46420 10.95030 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.013254 B = 0.004360 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.060504 B = 6420.728794 C = 7777.989151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.997 5.997 3 C 0.244 3.756 4 C -0.539 4.539 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.272 1.272 12 S 2.786 3.214 13 O -0.999 6.999 14 O -0.976 6.976 15 N -1.005 6.005 16 C 0.128 3.872 17 C -0.128 4.128 18 C 0.009 3.991 19 C 0.208 3.792 20 N -0.489 5.489 21 C -0.046 4.046 22 C -0.084 4.084 23 O -0.198 6.198 24 C -0.125 4.125 25 C 0.123 3.877 26 H 0.043 0.957 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.037 0.963 30 H 0.051 0.949 31 H 0.264 0.736 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.117 0.883 37 H 0.182 0.818 38 H 0.213 0.787 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.832 -16.248 -6.914 17.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.839 5.839 3 C 0.122 3.878 4 C -0.579 4.579 5 H 0.082 0.918 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.197 1.197 12 S 2.796 3.204 13 O -0.983 6.983 14 O -0.960 6.960 15 N -0.843 5.843 16 C 0.003 3.997 17 C -0.168 4.168 18 C -0.010 4.010 19 C 0.001 3.999 20 N -0.217 5.217 21 C -0.184 4.184 22 C -0.154 4.154 23 O -0.084 6.084 24 C -0.165 4.165 25 C -0.003 4.003 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.122 0.878 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.135 0.865 37 H 0.199 0.801 38 H 0.230 0.770 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.112 0.888 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.681 -16.137 -6.499 17.409 hybrid contribution 0.414 0.046 -1.110 1.186 sum -0.267 -16.091 -7.609 17.801 Atomic orbital electron populations 1.21211 0.80147 1.02035 1.00596 1.57670 1.14198 1.23502 1.88519 1.19227 0.92160 0.78881 0.97576 1.21547 1.36556 1.06867 0.92902 0.91843 1.24955 0.95200 0.96525 0.97169 1.69936 1.36737 1.15131 1.30943 0.86588 0.77608 0.79038 0.84701 1.20686 1.21149 1.19678 1.01743 0.73126 0.72650 0.72913 1.93523 1.67436 1.60427 1.76883 1.93566 1.40771 1.85263 1.76363 1.58215 1.29310 1.64718 1.32078 1.21348 0.85594 0.94651 0.98123 1.22025 0.97555 0.97964 0.99226 1.19838 0.94597 0.88371 0.98202 1.26508 0.96220 0.91317 0.85821 1.70510 1.18221 1.16545 1.16449 1.23362 1.01992 0.93795 0.99262 1.25032 1.04879 0.97548 0.87963 1.84470 1.55807 1.29029 1.39136 1.21950 0.96645 0.98563 0.99318 1.21313 0.90737 0.90776 0.97469 0.93798 0.90804 0.92982 0.94502 0.93134 0.92574 0.87790 0.90391 0.90782 0.90182 0.86520 0.80098 0.77029 0.90357 0.90652 0.88788 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.78 10.31 59.84 0.62 2.40 16 2 N -1.00 -20.11 3.23 -123.05 -0.40 -20.51 16 3 C 0.24 5.90 5.41 -5.19 -0.03 5.88 16 4 C -0.54 -13.56 9.38 -34.44 -0.32 -13.89 16 5 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 6 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 7 N -0.89 -24.87 13.29 55.43 0.74 -24.13 16 8 Si 0.89 20.11 29.54 -169.99 -5.02 15.09 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 12 S 2.79 53.95 6.10 -107.50 -0.66 53.29 16 13 O -1.00 -19.75 15.80 -57.17 -0.90 -20.65 16 14 O -0.98 -21.98 15.28 -57.17 -0.87 -22.86 16 15 N -1.00 -15.98 3.35 -113.53 -0.38 -16.36 16 16 C 0.13 1.99 6.48 -3.70 -0.02 1.96 16 17 C -0.13 -1.65 5.34 -26.61 -0.14 -1.79 16 18 C 0.01 0.11 2.62 -91.73 -0.24 -0.13 16 19 C 0.21 2.65 6.85 -12.94 -0.09 2.56 16 20 N -0.49 -6.50 11.29 -11.10 -0.13 -6.62 16 21 C -0.05 -0.47 11.89 -17.77 -0.21 -0.68 16 22 C -0.08 -0.77 12.18 29.35 0.36 -0.41 16 23 O -0.20 -2.41 10.78 5.37 0.06 -2.36 16 24 C -0.12 -1.41 5.34 -26.63 -0.14 -1.55 16 25 C 0.12 1.55 6.47 -3.73 -0.02 1.53 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 28 H 0.05 0.74 7.79 -51.93 -0.40 0.34 16 29 H 0.04 0.94 8.11 -51.93 -0.42 0.52 16 30 H 0.05 1.35 6.91 -51.93 -0.36 0.99 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.10 1.82 6.92 -51.93 -0.36 1.46 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.12 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.18 1.28 8.06 -52.49 -0.42 0.85 16 38 H 0.21 1.02 8.06 -52.48 -0.42 0.60 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.09 1.17 6.92 -51.93 -0.36 0.81 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 359.79 15.07 5.42 5.42 Total: -1.00 -32.74 359.79 -8.58 -41.33 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -6.09 Total: 0.87 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -0.35 Total: -2.52 kcal Atomic # 7 Polarization: -67.46 SS G_CDS: -0.17 Total: -67.62 kcal Atomic # 8 Polarization: -44.14 SS G_CDS: -1.72 Total: -45.86 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: 53.95 SS G_CDS: -0.66 Total: 53.29 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.74 -8.58 -41.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601496446.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.790 kcal (2) G-P(sol) polarization free energy of solvation -32.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds