Wall clock time and date at job start Tue Mar 31 2020 05:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00108 * 2 1 4 4 H 1.48497 * 109.47015 * 240.00596 * 3 2 1 5 5 H 1.48494 * 109.47016 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46756 * 120.00528 * 3 2 1 7 7 C 1.37882 * 119.99917 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99723 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99929 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47062 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.47239 * 180.02562 * 10 9 7 12 12 C 1.34773 * 119.99875 * 179.97438 * 11 10 9 13 13 O 1.21362 * 120.00438 * 0.02562 * 12 11 10 14 14 C 1.49310 * 119.99988 * 179.97438 * 12 11 10 15 15 O 1.21390 * 119.99615 * 359.97438 * 14 12 11 16 16 N 1.34773 * 119.99988 * 179.97438 * 14 12 11 17 17 C 1.39142 * 119.99654 * 179.97438 * 16 14 12 18 18 C 1.36192 * 126.29494 * 0.04074 * 17 16 14 19 19 C 1.39758 * 107.87542 * 179.97438 * 18 17 16 20 20 N 1.30861 * 108.51680 * 359.74055 * 19 18 17 21 21 N 1.36216 * 126.29064 * 180.02562 * 17 16 14 22 22 C 1.39857 * 126.12813 * 0.02562 * 21 17 16 23 23 C 1.39340 * 120.85620 * 144.99684 * 22 21 17 24 24 C 1.37988 * 119.08005 * 180.02562 * 23 22 21 25 25 N 1.31954 * 120.83162 * 0.02562 * 24 23 22 26 26 C 1.31944 * 121.88848 * 359.97438 * 25 24 23 27 27 C 1.37996 * 120.83251 * 359.97438 * 26 25 24 28 28 H 0.97002 * 119.99935 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47213 * 60.00071 * 9 7 2 30 30 H 1.09005 * 109.47343 * 300.00438 * 9 7 2 31 31 H 1.09002 * 109.47545 * 60.00241 * 10 9 7 32 32 H 1.08997 * 109.47112 * 299.99840 * 10 9 7 33 33 H 0.96997 * 119.99478 * 359.97438 * 11 10 9 34 34 H 0.96990 * 120.00314 * 359.97438 * 16 14 12 35 35 H 1.08006 * 126.06290 * 359.96704 * 18 17 16 36 36 H 1.07995 * 125.73775 * 179.97438 * 19 18 17 37 37 H 1.08005 * 120.46212 * 0.02562 * 23 22 21 38 38 H 1.08004 * 119.58722 * 180.02562 * 24 23 22 39 39 H 1.07997 * 119.58728 * 179.97438 * 26 25 24 40 40 H 1.07994 * 120.46132 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5126 -4.9308 -0.0012 12 6 2.1865 -6.0980 -0.0018 13 8 3.4001 -6.0980 -0.0014 14 6 1.4400 -7.3911 -0.0018 15 8 0.2261 -7.3910 -0.0008 16 7 2.1139 -8.5582 -0.0030 17 6 1.4181 -9.7632 -0.0025 18 6 0.0644 -9.9125 -0.0017 19 6 -0.2162 -11.2816 -0.0020 20 7 0.9160 -11.9379 -0.0086 21 7 1.9658 -11.0104 -0.0030 22 6 3.3317 -11.3112 -0.0037 23 6 3.8191 -12.4220 0.6820 24 6 5.1737 -12.6841 0.6573 25 7 6.0026 -11.8985 -0.0037 26 6 5.5797 -10.8378 -0.6648 27 6 4.2400 -10.5078 -0.6900 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6246 -2.5571 0.8897 31 1 2.8718 -3.6044 0.8895 32 1 2.8718 -3.6043 -0.8905 33 1 0.5427 -4.9308 -0.0011 34 1 3.0838 -8.5582 -0.0042 35 1 -0.6632 -9.1143 -0.0008 36 1 -1.2016 -11.7235 -0.0012 37 1 3.1461 -13.0688 1.2253 38 1 5.5603 -13.5431 1.1856 39 1 6.2910 -10.2201 -1.1929 40 1 3.9004 -9.6385 -1.2334 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612257941.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:52 Heat of formation + Delta-G solvation = 61.054997 kcal Electronic energy + Delta-G solvation = -26283.153093 eV Core-core repulsion = 22293.574089 eV Total energy + Delta-G solvation = -3989.579004 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.35048 -40.73804 -40.24032 -38.63512 -35.97384 -35.06576 -34.54036 -32.96662 -31.84546 -30.47460 -30.08019 -29.56603 -26.08634 -24.66442 -24.36404 -23.95479 -21.96846 -21.44865 -21.04454 -20.18356 -19.49837 -18.03540 -17.16907 -16.94937 -16.60202 -16.45266 -16.29262 -15.90310 -15.48361 -15.23333 -14.92538 -14.59300 -14.50929 -14.23681 -14.13013 -14.11772 -13.83009 -13.47425 -13.15745 -12.38872 -12.37072 -11.82215 -11.58632 -11.35859 -11.23688 -11.11960 -10.99289 -10.75009 -10.50190 -10.13530 -9.97046 -9.79156 -9.63866 -9.37037 -9.16623 -8.90802 -8.62631 -8.49412 -6.16656 -4.20923 0.22326 0.53275 1.00261 1.38178 1.74456 2.24748 2.45197 3.09357 3.22527 3.26287 3.30878 3.32220 3.39813 3.92422 3.99178 4.23505 4.29766 4.42044 4.43275 4.57925 4.74688 4.86346 5.03669 5.18605 5.20387 5.23861 5.36338 5.51687 5.67933 5.98744 6.01944 6.09980 6.27112 6.36164 6.41804 6.53972 6.62387 7.13359 7.22721 7.39784 7.41777 7.47401 7.57413 7.78967 7.97780 8.18439 8.84216 9.44454 10.94655 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.019550 B = 0.002233 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.846874 B =12537.269300 C =13858.070051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.526 4.526 8 H 0.060 0.940 9 C 0.011 3.989 10 C 0.118 3.882 11 N -0.677 5.677 12 C 0.505 3.495 13 O -0.526 6.526 14 C 0.516 3.484 15 O -0.478 6.478 16 N -0.630 5.630 17 C 0.312 3.688 18 C -0.264 4.264 19 C 0.079 3.921 20 N -0.280 5.280 21 N -0.349 5.349 22 C 0.205 3.795 23 C -0.167 4.167 24 C 0.125 3.875 25 N -0.488 5.488 26 C 0.134 3.866 27 C -0.204 4.204 28 H 0.264 0.736 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.413 0.587 34 H 0.424 0.576 35 H 0.184 0.816 36 H 0.198 0.802 37 H 0.148 0.852 38 H 0.167 0.833 39 H 0.170 0.830 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.150 -25.154 0.109 25.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.003 4.003 11 N -0.328 5.328 12 C 0.283 3.717 13 O -0.404 6.404 14 C 0.298 3.702 15 O -0.348 6.348 16 N -0.281 5.281 17 C 0.096 3.904 18 C -0.295 4.295 19 C -0.109 4.109 20 N -0.099 5.099 21 N -0.131 5.131 22 C 0.104 3.896 23 C -0.189 4.189 24 C -0.032 4.032 25 N -0.197 5.197 26 C -0.023 4.023 27 C -0.227 4.227 28 H 0.074 0.926 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.249 0.751 34 H 0.264 0.736 35 H 0.201 0.799 36 H 0.215 0.785 37 H 0.165 0.835 38 H 0.184 0.816 39 H 0.188 0.812 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.476 -26.221 0.109 26.787 hybrid contribution -0.942 1.876 -0.024 2.100 sum 4.534 -24.344 0.086 24.763 Atomic orbital electron populations 1.69940 1.06104 1.27182 1.49734 1.24999 0.94912 0.99475 0.94819 0.86545 0.79504 0.82540 0.78794 1.20067 1.21197 1.20076 1.20946 0.93186 0.90157 1.52176 0.92176 1.19363 0.94153 0.90757 0.98358 1.22042 0.96381 0.80259 1.01663 1.46248 1.11975 1.05539 1.69031 1.19412 0.87541 0.84481 0.80220 1.90776 1.12829 1.87117 1.49654 1.20720 0.87884 0.84757 0.76886 1.90722 1.13192 1.86702 1.44199 1.42816 1.11810 1.02256 1.71185 1.18202 0.91224 0.79290 1.01696 1.21864 0.92583 0.98154 1.16856 1.24045 0.97601 0.92630 0.96613 1.77633 0.93573 1.12212 1.26485 1.45947 1.03991 1.02533 1.60610 1.17744 0.79708 0.96373 0.95751 1.22047 0.97673 0.98344 1.00850 1.22820 0.88593 0.97504 0.94291 1.67766 1.39386 1.04709 1.07884 1.22762 0.92717 0.92862 0.93947 1.22128 0.95039 1.03036 1.02452 0.92635 0.95561 0.95579 0.91517 0.91508 0.75118 0.73607 0.79897 0.78546 0.83462 0.81558 0.81242 0.84185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.33 13.29 55.43 0.74 -24.60 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.53 -13.89 9.11 -34.44 -0.31 -14.21 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.01 0.26 5.09 -27.89 -0.14 0.12 16 10 C 0.12 2.26 5.61 -4.04 -0.02 2.23 16 11 N -0.68 -10.96 5.55 -60.78 -0.34 -11.29 16 12 C 0.51 7.68 7.88 -11.65 -0.09 7.58 16 13 O -0.53 -8.84 16.47 5.49 0.09 -8.75 16 14 C 0.52 6.89 7.85 -11.65 -0.09 6.80 16 15 O -0.48 -6.83 13.60 5.46 0.07 -6.75 16 16 N -0.63 -7.34 5.04 -11.73 -0.06 -7.40 16 17 C 0.31 3.73 7.43 -152.59 -1.13 2.59 16 18 C -0.26 -3.01 9.65 -39.75 -0.38 -3.40 16 19 C 0.08 0.76 12.00 -17.40 -0.21 0.55 16 20 N -0.28 -3.17 12.36 30.60 0.38 -2.79 16 21 N -0.35 -3.98 3.77 -9.59 -0.04 -4.01 16 22 C 0.20 2.06 6.43 -83.38 -0.54 1.53 16 23 C -0.17 -1.42 9.89 -39.26 -0.39 -1.80 16 24 C 0.12 0.94 11.17 -17.59 -0.20 0.75 16 25 N -0.49 -4.42 10.36 -13.32 -0.14 -4.56 16 26 C 0.13 1.09 11.17 -17.59 -0.20 0.89 16 27 C -0.20 -1.79 8.54 -39.26 -0.34 -2.12 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.41 6.24 7.94 -40.82 -0.32 5.92 16 34 H 0.42 4.45 5.59 -40.82 -0.23 4.22 16 35 H 0.18 2.17 5.83 -52.48 -0.31 1.86 16 36 H 0.20 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.15 1.11 8.06 -52.48 -0.42 0.69 16 38 H 0.17 0.74 8.06 -52.48 -0.42 0.32 16 39 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.14 1.14 6.41 -52.49 -0.34 0.80 16 LS Contribution 355.20 15.07 5.35 5.35 Total: -1.00 -31.59 355.20 -7.22 -38.81 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -4.12 Total: 7.26 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -4.14 Total: 3.04 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: 0.54 Total: -54.64 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: 0.16 Total: -15.50 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.59 -7.22 -38.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612257941.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.865 kcal (2) G-P(sol) polarization free energy of solvation -31.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds