Wall clock time and date at job start Tue Mar 31 2020 06:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13612 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47306 * 26.72196 * 3 2 1 5 5 N 1.46500 * 109.47473 * 179.97438 * 4 3 2 6 6 C 1.36527 * 125.84061 * 85.02263 * 5 4 3 7 7 C 1.34887 * 108.98121 * 180.02562 * 6 5 4 8 8 C 1.41332 * 108.24715 * 0.02562 * 7 6 5 9 9 N 1.32708 * 126.39331 * 180.02562 * 8 7 6 10 10 C 1.34430 * 119.99921 * 0.02562 * 9 8 7 11 11 O 1.22087 * 120.00280 * 0.02562 * 10 9 8 12 12 N 1.34428 * 119.99909 * 180.02562 * 10 9 8 13 13 C 1.32711 * 120.00009 * 180.02562 * 12 10 9 14 14 C 1.41328 * 126.39128 * 0.02582 * 13 12 10 15 15 C 1.34890 * 108.24221 * 179.97438 * 14 13 12 16 16 N 1.36525 * 108.98259 * 0.02562 * 15 14 13 17 17 C 1.46501 * 125.84016 * 180.02562 * 16 15 14 18 18 C 1.50703 * 109.47018 * 84.97444 * 17 16 15 19 19 H 1.08002 * 120.00317 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00007 * 179.97438 * 18 17 16 21 21 N 1.31509 * 119.99934 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99953 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47071 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47150 * 120.00178 * 22 20 18 25 25 H 1.48498 * 109.46910 * 239.99910 * 22 20 18 26 26 N 1.37557 * 126.38987 * 179.71228 * 13 12 10 27 27 H 0.97000 * 126.37912 * 0.02562 * 26 13 12 28 28 N 1.37558 * 107.21336 * 359.73132 * 8 7 6 29 29 H 0.97003 * 126.37931 * 180.28070 * 28 8 7 30 30 H 1.09002 * 109.47132 * 146.72353 * 3 2 1 31 31 H 1.09001 * 109.47213 * 266.72382 * 3 2 1 32 32 H 1.09002 * 109.47153 * 300.00144 * 4 3 2 33 33 H 1.08998 * 109.47533 * 59.99773 * 4 3 2 34 34 H 1.07993 * 125.51332 * 0.02562 * 6 5 4 35 35 H 1.08001 * 125.87721 * 180.02562 * 7 6 5 36 36 H 1.07991 * 125.87496 * 359.94362 * 14 13 12 37 37 H 1.07997 * 125.50331 * 179.97438 * 15 14 13 38 38 H 1.08999 * 109.47551 * 204.97627 * 17 16 15 39 39 H 1.09002 * 109.47172 * 324.97881 * 17 16 15 40 40 H 0.97004 * 120.00152 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1187 -1.2875 -0.6486 5 7 4.5837 -1.2866 -0.6492 6 6 5.3837 -1.6960 0.3786 7 6 6.6744 -1.5498 0.0149 8 6 6.7078 -1.0256 -1.2972 9 7 7.7944 -0.7428 -2.0047 10 6 9.0131 -0.9535 -1.4780 11 8 9.1204 -1.4055 -0.3489 12 7 10.1137 -0.6664 -2.1944 13 6 11.3169 -0.8749 -1.6746 14 6 11.5970 -1.3908 -0.3890 15 6 12.9363 -1.4508 -0.2407 16 7 13.5304 -0.9928 -1.3814 17 6 14.9730 -0.8985 -1.6189 18 6 15.4883 -2.2251 -2.1145 19 1 14.8091 -3.0554 -2.2404 20 6 16.8267 -2.3787 -2.4082 21 7 17.6536 -1.3676 -2.2554 22 14 17.4653 -4.0229 -3.0232 23 1 16.3417 -4.9902 -3.1072 24 1 18.0698 -3.8475 -4.3681 25 1 18.4921 -4.5383 -2.0823 26 7 12.5240 -0.6349 -2.2889 27 1 12.6545 -0.2813 -3.1827 28 7 5.4038 -0.8697 -1.7066 29 1 5.1071 -0.5322 -2.5662 30 1 2.9710 0.8600 -0.5639 31 1 2.9714 0.0596 1.0260 32 1 2.7557 -2.1468 -0.0848 33 1 2.7554 -1.3465 -1.6746 34 1 5.0391 -2.0755 1.3290 35 1 7.5343 -1.7917 0.6219 36 1 10.8647 -1.6856 0.3479 37 1 13.4548 -1.8034 0.6386 38 1 15.1686 -0.1303 -2.3671 39 1 15.4780 -0.6370 -0.6890 40 1 18.5953 -1.4757 -2.4617 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614289232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:59 Heat of formation + Delta-G solvation = 223.860206 kcal Electronic energy + Delta-G solvation = -25448.364258 eV Core-core repulsion = 21498.137769 eV Total energy + Delta-G solvation = -3950.226489 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.35908 -40.54155 -38.41603 -37.56762 -35.17990 -34.12468 -32.99633 -32.51172 -31.53779 -30.82384 -30.50253 -29.25908 -26.59988 -24.73302 -23.31996 -22.34341 -21.86064 -21.12595 -20.89379 -19.21632 -18.51223 -17.49751 -16.96084 -16.56952 -16.24053 -15.64471 -15.53670 -15.42374 -15.05537 -14.77408 -14.63733 -14.25663 -14.02668 -13.87557 -13.60433 -13.47593 -13.29362 -13.01113 -12.94093 -12.62950 -12.50146 -12.36823 -11.95067 -11.82311 -11.26754 -11.02081 -10.60708 -10.46387 -10.22613 -10.05538 -9.60086 -9.41105 -8.85534 -8.83005 -8.42139 -7.99158 -7.45394 -6.65640 -6.35062 -4.57133 1.11583 1.17627 1.99389 2.09544 2.10177 2.29366 2.86655 3.09810 3.14277 3.19125 3.24834 3.57217 3.61069 3.99002 4.00178 4.12971 4.41920 4.44692 4.51401 4.73142 4.88737 4.93555 5.08060 5.24723 5.41284 5.48544 5.54734 6.01298 6.16231 6.21852 6.55223 6.67585 6.69773 6.78667 6.85077 6.94517 7.13949 7.34985 7.47807 7.60682 7.72914 7.89054 8.10364 8.30707 8.53894 8.82960 9.13134 9.97844 10.60268 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.043981 B = 0.001680 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.479819 B =16659.475348 C =16732.304494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C 0.205 3.795 3 C -0.051 4.051 4 C 0.149 3.851 5 N -0.406 5.406 6 C 0.124 3.876 7 C -0.278 4.278 8 C 0.476 3.524 9 N -0.630 5.630 10 C 0.667 3.333 11 O -0.644 6.644 12 N -0.671 5.671 13 C 0.476 3.524 14 C -0.334 4.334 15 C 0.157 3.843 16 N -0.349 5.349 17 C 0.255 3.745 18 C -0.555 4.555 19 H 0.070 0.930 20 C 0.069 3.931 21 N -0.888 5.888 22 Si 0.908 3.092 23 H -0.270 1.270 24 H -0.280 1.280 25 H -0.279 1.279 26 N -0.474 5.474 27 H 0.443 0.557 28 N -0.496 5.496 29 H 0.444 0.556 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.188 0.812 35 H 0.192 0.808 36 H 0.183 0.817 37 H 0.184 0.816 38 H 0.050 0.950 39 H 0.067 0.933 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.893 1.066 6.605 24.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.099 5.099 2 C -0.114 4.114 3 C -0.092 4.092 4 C 0.025 3.975 5 N -0.201 5.201 6 C -0.008 4.008 7 C -0.309 4.309 8 C 0.214 3.786 9 N -0.383 5.383 10 C 0.366 3.634 11 O -0.528 6.528 12 N -0.432 5.432 13 C 0.221 3.779 14 C -0.367 4.367 15 C 0.013 3.987 16 N -0.135 5.135 17 C 0.139 3.861 18 C -0.594 4.594 19 H 0.088 0.912 20 C -0.135 4.135 21 N -0.525 5.525 22 Si 0.735 3.265 23 H -0.194 1.194 24 H -0.206 1.206 25 H -0.205 1.205 26 N -0.198 5.198 27 H 0.290 0.710 28 N -0.228 5.228 29 H 0.292 0.708 30 H 0.135 0.865 31 H 0.139 0.861 32 H 0.129 0.871 33 H 0.118 0.882 34 H 0.205 0.795 35 H 0.209 0.791 36 H 0.200 0.800 37 H 0.201 0.799 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -25.260 1.621 5.353 25.872 hybrid contribution 0.984 -0.922 -0.047 1.350 sum -24.276 0.699 5.305 24.858 Atomic orbital electron populations 1.81328 1.12833 1.07516 1.08201 1.28780 0.94780 0.94083 0.93750 1.19833 0.82054 1.01340 1.05982 1.21522 0.74417 0.97533 1.03988 1.46059 1.01992 1.63936 1.08089 1.22655 0.90736 0.95801 0.91606 1.22972 0.97516 1.12115 0.98341 1.18979 0.84152 0.86416 0.89059 1.68339 0.96182 1.36762 1.36987 1.17588 0.86452 0.77356 0.82001 1.90570 1.88992 1.49964 1.23233 1.68284 0.94029 1.42713 1.38190 1.18949 0.85479 0.85674 0.87761 1.22484 0.95030 1.18434 1.00752 1.22753 0.93991 0.92432 0.89493 1.47904 1.02567 1.55796 1.07254 1.19990 0.66992 0.99201 0.99923 1.21499 0.94126 0.96795 1.46937 0.91173 1.24952 0.96275 0.97740 0.94581 1.69910 1.04718 1.30845 1.47010 0.86260 0.78998 0.82661 0.78598 1.19394 1.20579 1.20472 1.44449 0.99052 1.62396 1.13891 0.70967 1.44064 1.00559 1.66886 1.11262 0.70850 0.86501 0.86133 0.87104 0.88250 0.79498 0.79120 0.80006 0.79894 0.93184 0.91543 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -3.27 18.54 42.16 0.78 -2.49 16 2 C 0.20 0.77 15.43 -20.76 -0.32 0.45 16 3 C -0.05 -0.01 6.03 -29.52 -0.18 -0.19 16 4 C 0.15 0.09 6.40 -4.04 -0.03 0.07 16 5 N -0.41 -1.99 3.65 -61.07 -0.22 -2.21 16 6 C 0.12 0.77 11.45 -16.65 -0.19 0.58 16 7 C -0.28 -3.40 9.52 -39.60 -0.38 -3.78 16 8 C 0.48 6.84 8.08 -155.30 -1.25 5.59 16 9 N -0.63 -12.26 10.62 -15.66 -0.17 -12.43 16 10 C 0.67 14.85 8.42 -87.54 -0.74 14.11 16 11 O -0.64 -14.05 10.21 4.84 0.05 -14.00 16 12 N -0.67 -15.35 10.62 -15.66 -0.17 -15.52 16 13 C 0.48 10.13 8.08 -155.30 -1.25 8.88 16 14 C -0.33 -6.59 9.52 -39.60 -0.38 -6.97 16 15 C 0.16 2.81 11.45 -16.65 -0.19 2.62 16 16 N -0.35 -6.87 3.64 -62.24 -0.23 -7.09 16 17 C 0.26 5.54 6.19 -5.19 -0.03 5.51 16 18 C -0.56 -13.63 9.39 -34.44 -0.32 -13.95 16 19 H 0.07 1.78 7.81 -52.49 -0.41 1.37 16 20 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -23.03 13.29 55.43 0.74 -22.29 16 22 Si 0.91 19.70 29.54 -169.99 -5.02 14.68 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 26 N -0.47 -9.26 7.39 31.34 0.23 -9.03 16 27 H 0.44 7.78 8.96 -182.55 -1.64 6.14 16 28 N -0.50 -4.25 7.39 31.34 0.23 -4.02 16 29 H 0.44 2.84 8.96 -182.55 -1.64 1.20 16 30 H 0.12 0.01 8.14 -51.93 -0.42 -0.42 16 31 H 0.12 -0.12 8.14 -51.93 -0.42 -0.54 16 32 H 0.11 -0.12 8.14 -51.93 -0.42 -0.54 16 33 H 0.10 -0.01 8.14 -51.93 -0.42 -0.43 16 34 H 0.19 0.31 8.06 -52.49 -0.42 -0.12 16 35 H 0.19 2.86 5.76 -52.49 -0.30 2.56 16 36 H 0.18 3.66 5.76 -52.49 -0.30 3.36 16 37 H 0.18 2.58 8.06 -52.49 -0.42 2.15 16 38 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 LS Contribution 362.15 15.07 5.46 5.46 Total: -1.00 -37.89 362.15 -10.48 -48.37 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -6.80 Total: 6.02 kcal Atomic # 6 Polarization: 19.91 SS G_CDS: -5.36 Total: 14.55 kcal Atomic # 7 Polarization: -76.27 SS G_CDS: 1.20 Total: -75.07 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.05 Total: -14.00 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.89 -10.48 -48.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614289232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 272.229 kcal (2) G-P(sol) polarization free energy of solvation -37.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 234.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 223.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds