Wall clock time and date at job start Tue Mar 31 2020 05:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47825 * 2 1 4 4 C 1.50708 * 109.47104 * 120.00444 * 2 1 3 5 5 H 1.07997 * 120.00016 * 94.89216 * 4 2 1 6 6 C 1.37874 * 119.99483 * 274.89297 * 4 2 1 7 7 N 1.31517 * 119.99582 * 174.94886 * 6 4 2 8 8 Si 1.86801 * 120.00434 * 354.94577 * 6 4 2 9 9 H 1.48496 * 109.47021 * 275.03025 * 8 6 4 10 10 H 1.48503 * 109.46884 * 35.03116 * 8 6 4 11 11 H 1.48494 * 109.46856 * 155.02975 * 8 6 4 12 12 N 1.46508 * 109.46943 * 239.99857 * 2 1 3 13 13 C 1.34770 * 119.99478 * 85.00224 * 12 2 1 14 14 O 1.21363 * 120.00609 * 0.02562 * 13 12 2 15 15 C 1.49343 * 120.00000 * 179.97438 * 13 12 2 16 16 O 1.21387 * 119.99482 * 0.02562 * 15 13 12 17 17 N 1.34776 * 120.00324 * 179.97438 * 15 13 12 18 18 C 1.39746 * 119.99954 * 185.43883 * 17 15 13 19 19 C 1.38818 * 120.10855 * 34.66731 * 18 17 15 20 20 C 1.38134 * 119.98797 * 179.72200 * 19 18 17 21 21 C 1.38348 * 120.20615 * 0.56010 * 20 19 18 22 22 C 1.38183 * 120.20841 * 359.72086 * 21 20 19 23 23 C 1.38696 * 120.00958 * 359.97438 * 22 21 20 24 24 N 1.40223 * 120.10039 * 180.02562 * 23 22 21 25 25 C 1.34713 * 126.84021 * 4.92960 * 24 23 22 26 26 N 1.30865 * 108.03570 * 179.88933 * 25 24 23 27 27 C 1.33247 * 109.84278 * 0.39183 * 26 25 24 28 28 N 1.30768 * 108.99590 * 359.75478 * 27 26 25 29 29 H 1.09003 * 109.46610 * 54.98787 * 1 2 3 30 30 H 1.08997 * 109.47118 * 174.98771 * 1 2 3 31 31 H 1.08996 * 109.46538 * 294.98900 * 1 2 3 32 32 H 0.97003 * 120.00270 * 179.97438 * 7 6 4 33 33 H 0.96994 * 119.99814 * 265.00453 * 12 2 1 34 34 H 0.96994 * 119.99651 * 5.43462 * 17 15 13 35 35 H 1.08006 * 120.00652 * 0.02562 * 19 18 17 36 36 H 1.08001 * 119.90199 * 180.26171 * 20 19 18 37 37 H 1.07995 * 119.89704 * 179.74271 * 21 20 19 38 38 H 1.08002 * 119.98744 * 180.02562 * 22 21 20 39 39 H 1.07996 * 125.98014 * 0.03891 * 25 24 23 40 40 H 1.08008 * 125.50106 * 179.79774 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.2876 -1.7588 1.1823 6 6 2.1661 -0.0222 2.4176 7 7 2.5089 -0.6626 3.5140 8 14 1.8606 1.8200 2.4687 9 1 3.0998 2.5383 2.0766 10 1 0.7677 2.1668 1.5251 11 1 1.4716 2.2191 3.8451 12 7 2.0184 -0.6907 -1.1962 13 6 2.1471 -0.0183 -2.3571 14 8 1.8589 1.1594 -2.4115 15 6 2.6454 -0.7221 -3.5764 16 8 2.9340 -1.8999 -3.5219 17 7 2.7736 -0.0498 -4.7375 18 6 3.1304 -0.7317 -5.9039 19 6 2.6853 -2.0295 -6.1157 20 6 3.0347 -2.6991 -7.2723 21 6 3.8374 -2.0847 -8.2168 22 6 4.2899 -0.7953 -8.0119 23 6 3.9393 -0.1125 -6.8567 24 7 4.3970 1.1963 -6.6470 25 6 5.1024 1.9532 -7.5097 26 7 5.3319 3.1091 -6.9406 27 6 4.7998 3.1253 -5.7190 28 7 4.2167 1.9768 -5.4934 29 1 -0.3632 0.5897 -0.8417 30 1 -0.3633 -1.0237 -0.0898 31 1 -0.3632 0.4341 0.9315 32 1 2.6033 -0.1783 4.3491 33 1 2.2490 -1.6318 -1.1526 34 1 2.6182 0.9072 -4.7634 35 1 2.0618 -2.5137 -5.3786 36 1 2.6841 -3.7072 -7.4375 37 1 4.1109 -2.6144 -9.1173 38 1 4.9161 -0.3189 -8.7518 39 1 5.4206 1.6586 -8.4988 40 1 4.8426 3.9537 -5.0272 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615165672.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:54 Heat of formation + Delta-G solvation = 70.113552 kcal Electronic energy + Delta-G solvation = -27312.526646 eV Core-core repulsion = 23323.340451 eV Total energy + Delta-G solvation = -3989.186196 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.68548 -40.88865 -39.41677 -38.05821 -35.54838 -34.82719 -34.36906 -32.41596 -31.70998 -30.46917 -29.97729 -29.48578 -25.46577 -25.12640 -24.49879 -23.27580 -21.82524 -21.61845 -20.68295 -19.75516 -18.89047 -18.52350 -17.49054 -16.83368 -16.27384 -16.13962 -15.79559 -15.60162 -15.38841 -15.11735 -14.91520 -14.35481 -14.29992 -14.04549 -13.76350 -13.31900 -13.21487 -12.64914 -12.57583 -12.39984 -12.31592 -12.01823 -11.65265 -11.32666 -11.22676 -11.17636 -10.89913 -10.66571 -10.52338 -10.43867 -10.22593 -9.92232 -9.31532 -9.25732 -9.01064 -8.76495 -8.38115 -8.29954 -6.26940 -4.31219 0.30884 0.78835 1.62741 1.76625 1.82012 2.52573 2.60148 3.22918 3.29381 3.31005 3.36303 3.60600 3.87205 3.92557 3.99371 4.28096 4.43084 4.49369 4.62848 4.84900 4.91339 5.00299 5.05400 5.13421 5.31531 5.64596 5.77904 5.93359 5.97258 6.06866 6.15472 6.21900 6.34268 6.41767 6.55462 6.63211 6.77274 6.94195 7.13527 7.21518 7.36888 7.64828 7.73353 8.01997 8.38522 8.53978 8.74899 9.32496 10.84685 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.015811 B = 0.003252 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.447954 B = 8608.801371 C = 9887.760316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.233 3.767 3 H 0.052 0.948 4 C -0.536 4.536 5 H 0.082 0.918 6 C 0.083 3.917 7 N -0.886 5.886 8 Si 0.871 3.129 9 H -0.272 1.272 10 H -0.257 1.257 11 H -0.284 1.284 12 N -0.663 5.663 13 C 0.497 3.503 14 O -0.532 6.532 15 C 0.510 3.490 16 O -0.505 6.505 17 N -0.640 5.640 18 C 0.164 3.836 19 C -0.103 4.103 20 C -0.097 4.097 21 C -0.112 4.112 22 C -0.113 4.113 23 C 0.115 3.885 24 N -0.326 5.326 25 C 0.260 3.740 26 N -0.536 5.536 27 C 0.215 3.785 28 N -0.317 5.317 29 H 0.030 0.970 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.269 0.731 33 H 0.407 0.593 34 H 0.431 0.569 35 H 0.147 0.853 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.223 0.777 40 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.552 0.039 -26.166 26.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.131 3.869 3 H 0.070 0.930 4 C -0.574 4.574 5 H 0.100 0.900 6 C -0.122 4.122 7 N -0.522 5.522 8 Si 0.697 3.303 9 H -0.198 1.198 10 H -0.181 1.181 11 H -0.210 1.210 12 N -0.312 5.312 13 C 0.275 3.725 14 O -0.411 6.411 15 C 0.293 3.707 16 O -0.379 6.379 17 N -0.290 5.290 18 C 0.066 3.934 19 C -0.123 4.123 20 C -0.116 4.116 21 C -0.132 4.132 22 C -0.134 4.134 23 C 0.020 3.980 24 N -0.110 5.110 25 C -0.035 4.035 26 N -0.262 5.262 27 C -0.087 4.087 28 N -0.143 5.143 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.243 0.757 34 H 0.275 0.725 35 H 0.164 0.836 36 H 0.154 0.846 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.239 0.761 40 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 2.341 0.218 -25.265 25.374 hybrid contribution 0.108 0.847 0.065 0.857 sum 2.450 1.065 -25.200 25.341 Atomic orbital electron populations 1.22314 0.98053 1.00500 1.00190 1.19274 0.91231 0.94352 0.82043 0.93033 1.20968 1.46088 0.98570 0.91755 0.90003 1.24866 0.93669 0.98474 0.95206 1.69876 1.46160 1.36457 0.99702 0.86970 0.79969 0.85615 0.77727 1.19771 1.18127 1.21001 1.46413 1.61475 1.14784 1.08554 1.19670 0.81011 0.87305 0.84498 1.90730 1.50601 1.15102 1.84643 1.20923 0.77895 0.87144 0.84771 1.90745 1.46534 1.15643 1.84947 1.43546 1.65926 1.14175 1.05389 1.17459 0.95827 0.93420 0.86696 1.21211 1.00079 0.92803 0.98248 1.21192 0.97266 1.00323 0.92806 1.20976 0.98391 0.93784 1.00025 1.20635 1.01981 0.95487 0.95327 1.17441 1.00049 0.82489 0.98064 1.47745 1.40061 1.11322 1.11914 1.26184 0.92639 0.86796 0.97930 1.70658 1.26428 1.20457 1.08618 1.26253 0.93344 0.95619 0.93450 1.77939 1.26493 1.05552 1.04337 0.95062 0.93202 0.92123 0.92120 0.75749 0.72467 0.83553 0.84597 0.84503 0.84606 0.76086 0.75821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 9.10 37.16 0.34 -2.94 16 2 C 0.23 5.51 2.12 -69.07 -0.15 5.37 16 3 H 0.05 1.30 5.34 -51.93 -0.28 1.03 16 4 C -0.54 -14.41 9.06 -34.44 -0.31 -14.73 16 5 H 0.08 2.34 8.02 -52.49 -0.42 1.91 16 6 C 0.08 2.29 5.47 -17.82 -0.10 2.20 16 7 N -0.89 -25.98 13.96 55.43 0.77 -25.21 16 8 Si 0.87 21.03 26.19 -169.99 -4.45 16.58 16 9 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.26 -5.98 6.15 56.52 0.35 -5.64 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 N -0.66 -13.89 5.06 -55.39 -0.28 -14.17 16 13 C 0.50 9.91 7.85 -11.64 -0.09 9.82 16 14 O -0.53 -11.58 16.15 5.49 0.09 -11.49 16 15 C 0.51 8.89 7.61 -11.64 -0.09 8.80 16 16 O -0.51 -9.09 14.26 5.46 0.08 -9.01 16 17 N -0.64 -9.78 4.61 -10.19 -0.05 -9.83 16 18 C 0.16 2.13 6.26 -83.57 -0.52 1.60 16 19 C -0.10 -1.17 8.65 -39.41 -0.34 -1.51 16 20 C -0.10 -0.77 10.04 -39.58 -0.40 -1.17 16 21 C -0.11 -0.71 10.04 -39.56 -0.40 -1.11 16 22 C -0.11 -0.80 9.47 -39.43 -0.37 -1.18 16 23 C 0.11 1.24 6.71 -83.38 -0.56 0.68 16 24 N -0.33 -3.71 3.82 -11.68 -0.04 -3.76 16 25 C 0.26 2.32 11.98 -90.37 -1.08 1.24 16 26 N -0.54 -5.93 11.19 -15.74 -0.18 -6.11 16 27 C 0.22 2.49 13.03 -91.76 -1.20 1.30 16 28 N -0.32 -4.31 9.56 29.30 0.28 -4.03 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 1.32 6.73 -51.93 -0.35 0.97 16 32 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.41 8.06 8.03 -40.82 -0.33 7.73 16 34 H 0.43 6.77 5.94 -40.82 -0.24 6.53 16 35 H 0.15 1.81 6.52 -52.48 -0.34 1.46 16 36 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 38 H 0.14 0.50 6.83 -52.49 -0.36 0.14 16 39 H 0.22 0.84 7.13 -52.49 -0.37 0.46 16 40 H 0.23 1.91 8.06 -52.48 -0.42 1.48 16 LS Contribution 345.83 15.07 5.21 5.21 Total: -1.00 -33.87 345.83 -7.83 -41.70 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -4.00 Total: 11.74 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: -5.27 Total: 8.37 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: 0.51 Total: -63.10 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: 0.17 Total: -20.50 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.45 Total: 16.58 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.87 -7.83 -41.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615165672.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.816 kcal (2) G-P(sol) polarization free energy of solvation -33.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds