Wall clock time and date at job start Tue Mar 31 2020 05:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47282 * 2 1 4 4 C 1.50702 * 109.46771 * 240.00205 * 2 1 3 5 5 H 1.08001 * 120.00071 * 245.29891 * 4 2 1 6 6 C 1.37878 * 119.99974 * 65.31071 * 4 2 1 7 7 N 1.31518 * 120.00093 * 184.85771 * 6 4 2 8 8 Si 1.86798 * 119.99911 * 5.12844 * 6 4 2 9 9 H 1.48492 * 109.47432 * 269.72977 * 8 6 4 10 10 H 1.48504 * 109.47137 * 29.73134 * 8 6 4 11 11 H 1.48507 * 109.46972 * 149.72874 * 8 6 4 12 12 N 1.46502 * 109.47006 * 120.00782 * 2 1 3 13 13 C 1.34780 * 119.99859 * 274.99461 * 12 2 1 14 14 O 1.21366 * 119.99466 * 0.02562 * 13 12 2 15 15 C 1.49337 * 120.00110 * 180.02562 * 13 12 2 16 16 O 1.21378 * 119.99735 * 0.02562 * 15 13 12 17 17 N 1.34778 * 119.99691 * 180.02562 * 15 13 12 18 18 C 1.39746 * 119.99349 * 185.44945 * 17 15 13 19 19 C 1.38818 * 120.10984 * 34.66776 * 18 17 15 20 20 C 1.38137 * 119.99036 * 179.69761 * 19 18 17 21 21 C 1.38345 * 120.20172 * 0.59814 * 20 19 18 22 22 C 1.38180 * 120.21388 * 359.67237 * 21 20 19 23 23 C 1.38700 * 120.00664 * 0.02881 * 22 21 20 24 24 N 1.40225 * 120.09624 * 180.02562 * 23 22 21 25 25 C 1.34699 * 126.84499 * 4.93462 * 24 23 22 26 26 N 1.30873 * 108.03565 * 179.87514 * 25 24 23 27 27 C 1.33242 * 109.84198 * 0.40477 * 26 25 24 28 28 N 1.30764 * 108.99815 * 359.74710 * 27 26 25 29 29 H 1.09009 * 109.47328 * 174.97618 * 1 2 3 30 30 H 1.09003 * 109.47173 * 294.97824 * 1 2 3 31 31 H 1.09005 * 109.47344 * 54.97772 * 1 2 3 32 32 H 0.96998 * 119.99724 * 355.27038 * 7 6 4 33 33 H 0.96995 * 120.00193 * 95.00079 * 12 2 1 34 34 H 0.96996 * 120.00290 * 5.45229 * 17 15 13 35 35 H 1.08006 * 120.00602 * 359.97438 * 19 18 17 36 36 H 1.07997 * 119.90354 * 180.29367 * 20 19 18 37 37 H 1.08004 * 119.89159 * 179.70391 * 21 20 19 38 38 H 1.08002 * 119.99588 * 180.02562 * 22 21 20 39 39 H 1.08007 * 125.98388 * 359.97438 * 25 24 23 40 40 H 1.08005 * 125.49948 * 179.77711 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.5807 -1.6357 -1.1338 6 6 1.7917 -0.1789 -2.4798 7 7 2.1454 -0.8452 -3.5571 8 14 0.9704 1.4910 -2.6420 9 1 -0.5022 1.3135 -2.7136 10 1 1.3115 2.3271 -1.4631 11 1 1.4490 2.1600 -3.8785 12 7 2.0183 -0.6908 1.1961 13 6 2.1471 -0.0185 2.3571 14 8 1.8581 1.1590 2.4118 15 6 2.6454 -0.7225 3.5763 16 8 2.9348 -1.9000 3.5214 17 7 2.7737 -0.0503 4.7374 18 6 3.3461 -0.6767 5.8477 19 6 4.3734 -1.5945 5.6767 20 6 4.9417 -2.2076 6.7764 21 6 4.4819 -1.9193 8.0490 22 6 3.4560 -1.0112 8.2285 23 6 2.8832 -0.3859 7.1309 24 7 1.8423 0.5363 7.3110 25 6 1.3553 0.9859 8.4836 26 7 0.3934 1.8346 8.2242 27 6 0.2318 1.9460 6.9064 28 7 1.0957 1.1706 6.3045 29 1 -0.3634 -1.0238 -0.0900 30 1 -0.3634 0.4340 0.9316 31 1 -0.3634 0.5898 -0.8416 32 1 2.6364 -1.6775 -3.4732 33 1 2.2490 -1.6319 1.1524 34 1 2.4686 0.8682 4.8024 35 1 4.7314 -1.8259 4.6843 36 1 5.7441 -2.9178 6.6421 37 1 4.9267 -2.4051 8.9049 38 1 3.1000 -0.7885 9.2236 39 1 1.6994 0.6977 9.4660 40 1 -0.4951 2.5756 6.4146 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615165673.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:58 Heat of formation + Delta-G solvation = 69.406079 kcal Electronic energy + Delta-G solvation = -27308.960672 eV Core-core repulsion = 23319.743798 eV Total energy + Delta-G solvation = -3989.216874 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.71701 -40.92218 -39.44693 -38.09369 -35.59601 -34.88184 -34.40462 -32.48778 -31.74080 -30.48978 -29.94395 -29.50788 -25.41678 -24.78645 -24.52515 -23.27522 -21.85242 -21.62870 -20.66220 -19.75195 -18.93036 -18.58323 -17.61434 -17.20823 -16.34534 -16.27631 -15.94337 -15.60972 -15.23690 -15.12104 -14.98668 -14.40054 -14.20809 -14.03177 -13.71873 -13.26428 -13.22116 -12.80949 -12.60669 -12.34184 -12.27373 -12.04318 -11.85056 -11.54075 -11.29650 -11.21111 -10.69520 -10.61558 -10.47168 -10.25788 -10.14833 -9.83840 -9.31329 -9.03812 -8.95035 -8.63818 -8.41954 -8.33265 -6.61641 -4.30389 0.28216 0.76459 1.59853 1.73278 1.78784 2.49632 2.57044 3.26727 3.31920 3.41083 3.54292 3.56990 3.84347 3.89679 3.96510 4.36286 4.40450 4.46740 4.60869 4.83567 4.89274 4.98869 5.03173 5.15735 5.29089 5.62288 5.75894 5.90429 5.94569 6.04666 6.12738 6.25239 6.31579 6.32764 6.49178 6.60403 6.74071 6.93561 7.14019 7.16885 7.47654 7.62005 7.75168 8.14455 8.23573 8.46377 8.73238 9.40764 10.79589 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.017245 B = 0.003135 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.252068 B = 8930.011591 C =10310.765867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.233 3.767 3 H 0.054 0.946 4 C -0.613 4.613 5 H 0.065 0.935 6 C 0.037 3.963 7 N -0.902 5.902 8 Si 1.051 2.949 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.662 5.662 13 C 0.497 3.503 14 O -0.530 6.530 15 C 0.510 3.490 16 O -0.506 6.506 17 N -0.639 5.639 18 C 0.164 3.836 19 C -0.103 4.103 20 C -0.096 4.096 21 C -0.112 4.112 22 C -0.113 4.113 23 C 0.115 3.885 24 N -0.326 5.326 25 C 0.260 3.740 26 N -0.536 5.536 27 C 0.215 3.785 28 N -0.318 5.318 29 H 0.053 0.947 30 H 0.035 0.965 31 H 0.054 0.946 32 H 0.270 0.730 33 H 0.406 0.594 34 H 0.431 0.569 35 H 0.147 0.853 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.223 0.777 40 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.164 0.262 26.906 27.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.131 3.869 3 H 0.071 0.929 4 C -0.651 4.651 5 H 0.083 0.917 6 C -0.169 4.169 7 N -0.535 5.535 8 Si 0.879 3.121 9 H -0.207 1.207 10 H -0.199 1.199 11 H -0.213 1.213 12 N -0.311 5.311 13 C 0.275 3.725 14 O -0.408 6.408 15 C 0.293 3.707 16 O -0.380 6.380 17 N -0.290 5.290 18 C 0.066 3.934 19 C -0.123 4.123 20 C -0.116 4.116 21 C -0.131 4.131 22 C -0.134 4.134 23 C 0.019 3.981 24 N -0.110 5.110 25 C -0.035 4.035 26 N -0.262 5.262 27 C -0.087 4.087 28 N -0.144 5.144 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.241 0.759 34 H 0.276 0.724 35 H 0.165 0.835 36 H 0.154 0.846 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.239 0.761 40 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 2.392 1.518 25.089 25.248 hybrid contribution 0.571 -1.362 1.284 1.956 sum 2.963 0.157 26.373 26.539 Atomic orbital electron populations 1.22415 0.98574 1.01304 0.99553 1.19429 0.90775 0.94879 0.81833 0.92853 1.22150 1.41096 1.11017 0.90808 0.91670 1.25720 0.96183 1.03538 0.91467 1.70824 1.35753 1.16803 1.30113 0.83924 0.76502 0.75438 0.76211 1.20677 1.19947 1.21269 1.46208 1.61576 1.14630 1.08712 1.19646 0.81085 0.87312 0.84435 1.90735 1.50277 1.15136 1.84640 1.20899 0.78144 0.86875 0.84785 1.90741 1.47361 1.15095 1.84795 1.43536 1.58827 1.18346 1.08264 1.17454 0.94055 0.97077 0.84845 1.21225 0.93689 0.96258 1.01163 1.21198 0.99597 0.99059 0.91700 1.20981 0.96612 0.97691 0.97859 1.20636 0.98233 0.98012 0.96546 1.17437 0.90827 0.95687 0.94108 1.47741 1.25665 1.32005 1.05604 1.26189 0.91935 0.92471 0.92924 1.70661 1.18858 1.20407 1.16236 1.26247 0.97400 0.96702 0.88332 1.77935 1.10164 1.14308 1.11989 0.92765 0.94611 0.92696 0.92001 0.75903 0.72437 0.83548 0.84575 0.84476 0.84584 0.76076 0.75818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 9.07 37.16 0.34 -3.21 16 2 C 0.23 5.60 2.14 -69.08 -0.15 5.45 16 3 H 0.05 1.37 6.08 -51.93 -0.32 1.05 16 4 C -0.61 -16.61 9.10 -34.44 -0.31 -16.92 16 5 H 0.07 1.86 7.95 -52.49 -0.42 1.44 16 6 C 0.04 1.04 5.43 -17.82 -0.10 0.94 16 7 N -0.90 -26.90 13.70 55.43 0.76 -26.14 16 8 Si 1.05 25.01 25.28 -169.99 -4.30 20.71 16 9 H -0.28 -6.30 6.82 56.52 0.39 -5.91 16 10 H -0.27 -6.25 6.35 56.52 0.36 -5.89 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 N -0.66 -14.04 5.06 -55.40 -0.28 -14.32 16 13 C 0.50 9.94 7.85 -11.64 -0.09 9.85 16 14 O -0.53 -11.51 16.15 5.48 0.09 -11.42 16 15 C 0.51 8.90 7.61 -11.64 -0.09 8.81 16 16 O -0.51 -9.14 14.26 5.47 0.08 -9.06 16 17 N -0.64 -9.74 4.61 -10.19 -0.05 -9.79 16 18 C 0.16 2.12 6.26 -83.57 -0.52 1.59 16 19 C -0.10 -1.18 8.65 -39.40 -0.34 -1.52 16 20 C -0.10 -0.78 10.04 -39.58 -0.40 -1.17 16 21 C -0.11 -0.71 10.04 -39.56 -0.40 -1.10 16 22 C -0.11 -0.79 9.47 -39.43 -0.37 -1.16 16 23 C 0.11 1.22 6.71 -83.38 -0.56 0.66 16 24 N -0.33 -3.62 3.82 -11.67 -0.04 -3.66 16 25 C 0.26 2.24 11.98 -90.38 -1.08 1.16 16 26 N -0.54 -5.72 11.19 -15.74 -0.18 -5.90 16 27 C 0.22 2.39 13.03 -91.77 -1.20 1.19 16 28 N -0.32 -4.18 9.56 29.30 0.28 -3.90 16 29 H 0.05 1.16 8.14 -51.92 -0.42 0.74 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 1.21 4.40 -51.93 -0.23 0.98 16 32 H 0.27 7.98 8.72 -40.82 -0.36 7.62 16 33 H 0.41 8.19 7.99 -40.82 -0.33 7.86 16 34 H 0.43 6.73 5.94 -40.82 -0.24 6.49 16 35 H 0.15 1.86 6.52 -52.48 -0.34 1.52 16 36 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.14 0.45 8.06 -52.48 -0.42 0.03 16 38 H 0.14 0.47 6.83 -52.49 -0.36 0.11 16 39 H 0.22 0.78 7.13 -52.48 -0.37 0.41 16 40 H 0.23 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 343.27 15.07 5.17 5.17 Total: -1.00 -33.99 343.27 -7.66 -41.65 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -3.93 Total: 12.08 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: -5.27 Total: 4.58 kcal Atomic # 7 Polarization: -64.19 SS G_CDS: 0.49 Total: -63.70 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: 0.17 Total: -20.48 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -4.30 Total: 20.71 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.99 -7.66 -41.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615165673.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.056 kcal (2) G-P(sol) polarization free energy of solvation -33.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds