Wall clock time and date at job start Tue Mar 31 2020 05:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 N 1.46495 * 109.47194 * 120.00052 * 2 1 3 13 13 C 1.34776 * 120.00388 * 275.00617 * 12 2 1 14 14 O 1.21367 * 119.99805 * 359.97438 * 13 12 2 15 15 C 1.49299 * 120.00068 * 180.02562 * 13 12 2 16 16 O 1.21389 * 120.00225 * 359.97438 * 15 13 12 17 17 N 1.34779 * 119.99975 * 179.97438 * 15 13 12 18 18 C 1.39131 * 120.00336 * 179.97438 * 17 15 13 19 19 C 1.36197 * 126.29049 * 359.69024 * 18 17 15 20 20 C 1.39756 * 107.87541 * 179.84577 * 19 18 17 21 21 N 1.30872 * 108.51964 * 0.42532 * 20 19 18 22 22 N 1.36220 * 126.29679 * 179.97438 * 18 17 15 23 23 C 1.39853 * 126.12571 * 359.96943 * 22 18 17 24 24 C 1.39347 * 120.85491 * 324.71696 * 23 22 18 25 25 C 1.37989 * 119.08354 * 179.77381 * 24 23 22 26 26 N 1.31946 * 120.82791 * 0.51412 * 25 24 23 27 27 C 1.31949 * 121.89031 * 359.73560 * 26 25 24 28 28 C 1.37989 * 120.83048 * 0.02562 * 27 26 25 29 29 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 30 30 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 31 31 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 32 32 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 33 33 H 0.97008 * 120.00075 * 94.99858 * 12 2 1 34 34 H 0.97005 * 120.00073 * 0.02562 * 17 15 13 35 35 H 1.07994 * 126.06273 * 359.97438 * 19 18 17 36 36 H 1.07997 * 125.74120 * 180.16970 * 20 19 18 37 37 H 1.08004 * 120.45505 * 0.02562 * 24 23 22 38 38 H 1.07996 * 119.58597 * 180.22631 * 25 24 23 39 39 H 1.07998 * 119.58603 * 180.02562 * 27 26 25 40 40 H 1.08003 * 120.45403 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8588 1.1593 2.4116 15 6 2.6453 -0.7221 3.5760 16 8 2.9341 -1.8999 3.5214 17 7 2.7744 -0.0497 4.7369 18 6 3.2382 -0.7056 5.8729 19 6 3.5912 -2.0182 5.9582 20 6 4.0027 -2.2674 7.2704 21 7 3.8963 -1.1584 7.9570 22 7 3.4176 -0.1543 7.1056 23 6 3.1688 1.1761 7.4579 24 6 3.4048 2.2107 6.5548 25 6 3.1420 3.5096 6.9393 26 7 2.6832 3.7776 8.1471 27 6 2.4519 2.8264 9.0318 28 6 2.6845 1.5018 8.7232 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.9111 -0.5221 -4.4375 33 1 2.2491 -1.6318 1.1526 34 1 2.5433 0.8914 4.7806 35 1 3.5607 -2.7383 5.1540 36 1 4.3463 -3.2165 7.6543 37 1 3.7842 1.9985 5.5662 38 1 3.3185 4.3174 6.2446 39 1 2.0759 3.0879 10.0099 40 1 2.4927 0.7281 9.4519 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615166172.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:30 Heat of formation + Delta-G solvation = 75.306115 kcal Electronic energy + Delta-G solvation = -27003.635396 eV Core-core repulsion = 23014.674366 eV Total energy + Delta-G solvation = -3988.961029 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.26188 -40.60698 -40.15569 -38.49964 -35.90934 -35.12150 -34.48973 -32.54753 -31.78621 -30.41164 -30.27211 -29.51488 -25.61126 -25.19241 -24.35923 -24.21006 -22.12753 -21.52230 -20.59308 -19.91946 -19.46162 -18.20099 -17.05515 -16.91620 -16.61428 -16.30625 -16.13493 -15.82015 -15.55947 -15.23847 -14.98890 -14.54694 -14.23886 -14.14213 -14.03831 -13.79252 -13.54810 -13.35116 -13.07180 -12.35949 -12.30279 -12.04769 -11.67185 -11.50305 -11.46154 -11.16232 -10.95936 -10.89101 -10.33478 -10.07178 -9.84328 -9.73454 -9.44722 -9.41843 -9.09340 -8.93323 -8.56833 -8.50343 -6.31748 -4.36722 0.29385 0.58999 1.14597 1.48386 1.85228 2.38009 2.53554 3.14314 3.27068 3.27170 3.28270 3.31556 3.58675 3.97917 4.05633 4.20092 4.29895 4.49867 4.61263 4.65519 4.81834 4.95021 5.01657 5.11019 5.25256 5.29860 5.45125 5.59582 5.75591 6.04724 6.11320 6.15305 6.33676 6.35313 6.50450 6.60092 6.67032 6.84605 6.99057 7.25467 7.27566 7.39442 7.47138 7.82732 8.25345 8.30992 8.67328 9.25895 10.80062 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.017154 B = 0.002899 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.910440 B = 9654.762947 C =10978.393884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.235 3.765 3 H 0.056 0.944 4 C -0.542 4.542 5 H 0.084 0.916 6 C 0.081 3.919 7 N -0.886 5.886 8 Si 0.885 3.115 9 H -0.275 1.275 10 H -0.261 1.261 11 H -0.292 1.292 12 N -0.655 5.655 13 C 0.503 3.497 14 O -0.532 6.532 15 C 0.516 3.484 16 O -0.479 6.479 17 N -0.631 5.631 18 C 0.314 3.686 19 C -0.265 4.265 20 C 0.079 3.921 21 N -0.282 5.282 22 N -0.349 5.349 23 C 0.205 3.795 24 C -0.203 4.203 25 C 0.134 3.866 26 N -0.488 5.488 27 C 0.124 3.876 28 C -0.168 4.168 29 H 0.038 0.962 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.269 0.731 33 H 0.410 0.590 34 H 0.423 0.577 35 H 0.184 0.816 36 H 0.197 0.803 37 H 0.141 0.859 38 H 0.170 0.830 39 H 0.167 0.833 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.294 2.740 22.850 23.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.133 3.867 3 H 0.073 0.927 4 C -0.580 4.580 5 H 0.102 0.898 6 C -0.123 4.123 7 N -0.523 5.523 8 Si 0.714 3.286 9 H -0.201 1.201 10 H -0.186 1.186 11 H -0.219 1.219 12 N -0.304 5.304 13 C 0.281 3.719 14 O -0.411 6.411 15 C 0.298 3.702 16 O -0.350 6.350 17 N -0.282 5.282 18 C 0.098 3.902 19 C -0.296 4.296 20 C -0.109 4.109 21 N -0.101 5.101 22 N -0.131 5.131 23 C 0.105 3.895 24 C -0.226 4.226 25 C -0.023 4.023 26 N -0.198 5.198 27 C -0.033 4.033 28 C -0.190 4.190 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.246 0.754 34 H 0.264 0.736 35 H 0.201 0.799 36 H 0.214 0.786 37 H 0.159 0.841 38 H 0.187 0.813 39 H 0.184 0.816 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.246 4.179 23.845 24.241 hybrid contribution -0.484 -0.586 -1.257 1.469 sum 0.762 3.593 22.588 22.884 Atomic orbital electron populations 1.22482 0.98552 1.01446 0.99743 1.19369 0.90642 0.94825 0.81885 0.92652 1.20970 1.33902 1.14897 0.88200 0.89771 1.24810 0.95402 0.96703 0.95404 1.69854 1.44313 1.39952 0.98138 0.86892 0.80604 0.83433 0.77690 1.20126 1.18622 1.21916 1.46150 1.60954 1.14892 1.08382 1.19389 0.81201 0.87160 0.84200 1.90753 1.50788 1.15026 1.84531 1.20871 0.78316 0.87104 0.83903 1.90703 1.45192 1.15077 1.83989 1.42859 1.63320 1.15421 1.06581 1.18231 0.99440 0.91854 0.80693 1.21858 1.13647 0.94252 0.99863 1.24035 0.97076 0.97313 0.92476 1.77624 1.21789 0.96064 1.14617 1.45939 1.54010 1.07232 1.05950 1.17744 0.96040 0.80430 0.95315 1.22145 1.05373 0.93445 1.01625 1.22758 0.92088 0.94579 0.92883 1.67759 1.12194 1.37209 1.02635 1.22805 0.94086 0.87509 0.98892 1.22037 1.01370 0.99217 0.96347 0.94333 0.92890 0.92323 0.92047 0.75356 0.73648 0.79910 0.78610 0.84116 0.81254 0.81611 0.83499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 8.96 37.16 0.33 -3.06 16 2 C 0.24 5.22 2.15 -69.08 -0.15 5.07 16 3 H 0.06 1.32 6.63 -51.93 -0.34 0.97 16 4 C -0.54 -13.96 9.31 -34.44 -0.32 -14.29 16 5 H 0.08 2.31 7.98 -52.49 -0.42 1.89 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -25.36 13.96 55.43 0.77 -24.58 16 8 Si 0.88 20.52 24.37 -169.99 -4.14 16.38 16 9 H -0.27 -6.17 6.88 56.52 0.39 -5.78 16 10 H -0.26 -5.91 6.52 56.52 0.37 -5.55 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 N -0.65 -12.34 5.06 -55.41 -0.28 -12.62 16 13 C 0.50 8.71 7.85 -11.66 -0.09 8.62 16 14 O -0.53 -10.07 16.14 5.48 0.09 -9.98 16 15 C 0.52 7.69 7.85 -11.66 -0.09 7.59 16 16 O -0.48 -7.50 13.60 5.46 0.07 -7.43 16 17 N -0.63 -8.13 5.04 -11.74 -0.06 -8.19 16 18 C 0.31 4.05 7.43 -152.59 -1.13 2.92 16 19 C -0.27 -3.26 9.65 -39.75 -0.38 -3.64 16 20 C 0.08 0.81 12.00 -17.39 -0.21 0.60 16 21 N -0.28 -3.38 12.36 30.61 0.38 -3.00 16 22 N -0.35 -4.25 3.77 -9.59 -0.04 -4.29 16 23 C 0.21 2.23 6.43 -83.38 -0.54 1.69 16 24 C -0.20 -1.96 8.53 -39.26 -0.34 -2.30 16 25 C 0.13 1.19 11.17 -17.59 -0.20 0.99 16 26 N -0.49 -4.73 10.36 -13.33 -0.14 -4.87 16 27 C 0.12 1.01 11.17 -17.59 -0.20 0.81 16 28 C -0.17 -1.53 9.88 -39.26 -0.39 -1.91 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 1.13 3.28 -51.93 -0.17 0.96 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.41 7.25 8.01 -40.82 -0.33 6.93 16 34 H 0.42 4.98 5.62 -40.82 -0.23 4.75 16 35 H 0.18 2.34 5.83 -52.49 -0.31 2.03 16 36 H 0.20 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.14 1.29 6.44 -52.48 -0.34 0.96 16 38 H 0.17 1.08 8.06 -52.49 -0.42 0.65 16 39 H 0.17 0.83 8.06 -52.49 -0.42 0.40 16 40 H 0.15 1.20 8.06 -52.48 -0.42 0.77 16 LS Contribution 343.60 15.07 5.18 5.18 Total: -1.00 -31.10 343.60 -5.81 -36.91 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -3.85 Total: 11.31 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -3.79 Total: 5.18 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: 0.64 Total: -57.56 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: 0.16 Total: -17.41 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.14 Total: 16.38 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.10 -5.81 -36.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615166172.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.219 kcal (2) G-P(sol) polarization free energy of solvation -31.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds