Wall clock time and date at job start Tue Mar 31 2020 05:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46504 * 109.47563 * 2 1 4 4 C 1.46500 * 119.99768 * 84.99831 * 3 2 1 5 5 C 1.50706 * 109.46949 * 275.00438 * 4 3 2 6 6 H 1.07995 * 120.00167 * 359.72205 * 5 4 3 7 7 C 1.37879 * 119.99394 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47405 * 60.00219 * 9 7 5 11 11 H 1.48503 * 109.46845 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47399 * 299.99813 * 9 7 5 13 13 S 1.65594 * 120.00146 * 265.00606 * 3 2 1 14 14 O 1.42102 * 106.40753 * 23.53418 * 13 3 2 15 15 O 1.42099 * 106.40296 * 156.45801 * 13 3 2 16 16 N 1.65606 * 107.21631 * 269.99304 * 13 3 2 17 17 C 1.47021 * 125.64423 * 90.02402 * 16 13 3 18 18 C 1.54327 * 107.26917 * 181.02131 * 17 16 13 19 19 C 1.55160 * 102.94042 * 22.19754 * 18 17 16 20 20 H 1.09001 * 111.00643 * 82.60903 * 19 18 17 21 21 N 1.46500 * 111.00335 * 206.42249 * 19 18 17 22 22 C 1.34432 * 126.82499 * 33.54098 * 21 19 18 23 23 N 1.30826 * 108.07976 * 179.97438 * 22 21 19 24 24 C 1.33248 * 109.82725 * 359.97438 * 23 22 21 25 25 N 1.30709 * 108.94737 * 359.75584 * 24 23 22 26 26 C 1.47422 * 125.64838 * 269.72026 * 16 13 3 27 27 H 1.09009 * 109.46990 * 59.99879 * 1 2 3 28 28 H 1.08994 * 109.47299 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47474 * 299.99960 * 1 2 3 30 30 H 1.09010 * 109.47107 * 240.00094 * 2 1 3 31 31 H 1.08995 * 109.47150 * 120.00268 * 2 1 3 32 32 H 1.09000 * 109.47175 * 155.00464 * 4 3 2 33 33 H 1.09001 * 109.47297 * 34.99971 * 4 3 2 34 34 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 35 35 H 1.08993 * 109.88547 * 300.43834 * 17 16 13 36 36 H 1.09005 * 109.88311 * 61.61007 * 17 16 13 37 37 H 1.09001 * 110.71860 * 140.55361 * 18 17 16 38 38 H 1.08997 * 110.72734 * 263.83084 * 18 17 16 39 39 H 1.08000 * 125.95652 * 359.93387 * 22 21 19 40 40 H 1.08001 * 125.52706 * 180.02562 * 24 23 22 41 41 H 1.08998 * 110.36679 * 274.74142 * 26 16 13 42 42 H 1.08994 * 110.36790 * 37.06746 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 1.2639 5 6 0.8360 2.7288 1.6356 6 1 -0.0215 2.5982 0.9922 7 6 0.7224 3.4671 2.7945 8 7 1.7681 3.6307 3.5752 9 14 -0.9167 4.2352 3.2556 10 1 -1.9378 3.1681 3.4087 11 1 -0.7748 4.9727 4.5367 12 1 -1.3404 5.1762 2.1877 13 16 2.4121 2.1202 -1.4286 14 8 1.6868 1.4416 -2.4448 15 8 2.3057 3.5186 -1.1997 16 7 4.0144 1.8137 -1.7137 17 6 4.5475 0.6626 -2.4567 18 6 6.0861 0.7818 -2.4441 19 6 6.3543 1.6871 -1.2128 20 1 6.3517 1.1046 -0.2915 21 7 7.6141 2.4195 -1.3640 22 6 8.1459 2.8799 -2.5096 23 7 9.2738 3.4773 -2.2224 24 6 9.4944 3.4194 -0.9095 25 7 8.5028 2.7861 -0.3401 26 6 5.1420 2.6533 -1.2699 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8901 31 1 1.8932 -0.5138 0.8899 32 1 2.9080 2.8918 1.1514 33 1 2.4689 1.4182 2.0481 34 1 1.6882 4.1504 4.3902 35 1 4.2436 -0.2649 -1.9715 36 1 4.1826 0.6830 -3.4837 37 1 6.5477 -0.1967 -2.3111 38 1 6.4438 1.2571 -3.3574 39 1 7.7172 2.7744 -3.4953 40 1 10.3511 3.8329 -0.3983 41 1 5.3249 3.4531 -1.9874 42 1 4.9407 3.0675 -0.2820 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619713633.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:55 Heat of formation + Delta-G solvation = 29.057408 kcal Electronic energy + Delta-G solvation = -27173.983534 eV Core-core repulsion = 23318.460962 eV Total energy + Delta-G solvation = -3855.522572 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.27094 -38.79173 -36.78501 -36.13425 -35.29243 -33.71950 -32.64074 -31.45801 -30.18997 -29.87162 -28.69855 -26.81064 -23.82237 -22.84810 -22.79177 -22.04509 -21.81733 -20.76854 -18.87843 -17.75136 -17.30326 -16.87727 -16.45493 -16.17275 -15.56448 -15.45732 -14.83589 -14.56778 -14.22971 -14.07298 -13.85593 -13.69845 -13.55491 -13.10452 -12.99496 -12.38709 -12.27123 -12.21059 -12.01069 -11.89673 -11.67350 -11.55397 -11.42382 -11.35668 -11.22117 -11.03584 -11.02306 -10.51043 -10.49234 -10.18850 -9.98995 -9.96534 -9.85790 -9.69227 -9.11494 -8.46795 -8.18304 -6.09716 -4.13432 0.94264 1.44716 2.02178 2.81044 3.30894 3.33562 3.35323 3.39700 3.86567 3.89467 4.11166 4.20955 4.40371 4.42645 4.60170 4.66914 4.86457 4.93183 5.08670 5.19950 5.26979 5.28511 5.38610 5.52139 5.54941 5.60304 5.77335 5.81519 5.98488 6.07746 6.10856 6.23428 6.27881 6.34331 6.59991 6.65158 6.92885 7.14645 7.33125 7.54093 7.87449 7.90801 8.15951 8.88232 9.51702 10.98955 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.014284 B = 0.004037 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.726616 B = 6934.430459 C = 8163.535777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.135 3.865 3 N -0.990 5.990 4 C 0.258 3.742 5 C -0.528 4.528 6 H 0.062 0.938 7 C 0.063 3.937 8 N -0.895 5.895 9 Si 0.895 3.105 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.275 1.275 13 S 2.789 3.211 14 O -0.986 6.986 15 O -0.955 6.955 16 N -1.022 6.022 17 C 0.124 3.876 18 C -0.136 4.136 19 C 0.145 3.855 20 H 0.127 0.873 21 N -0.367 5.367 22 C 0.254 3.746 23 N -0.547 5.547 24 C 0.195 3.805 25 N -0.312 5.312 26 C 0.118 3.882 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.034 0.966 33 H 0.035 0.965 34 H 0.264 0.736 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.217 0.783 40 H 0.217 0.783 41 H 0.074 0.926 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.147 -8.384 -11.413 18.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.009 3.991 3 N -0.832 5.832 4 C 0.137 3.863 5 C -0.567 4.567 6 H 0.081 0.919 7 C -0.139 4.139 8 N -0.534 5.534 9 Si 0.722 3.278 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.200 1.200 13 S 2.799 3.201 14 O -0.970 6.970 15 O -0.938 6.938 16 N -0.860 5.860 17 C -0.002 4.002 18 C -0.175 4.175 19 C 0.040 3.960 20 H 0.145 0.855 21 N -0.158 5.158 22 C -0.043 4.043 23 N -0.275 5.275 24 C -0.107 4.107 25 N -0.138 5.138 26 C -0.010 4.010 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.114 0.886 38 H 0.104 0.896 39 H 0.233 0.767 40 H 0.234 0.766 41 H 0.092 0.908 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.644 -7.782 -11.216 17.311 hybrid contribution -0.799 0.248 0.522 0.986 sum 9.846 -7.534 -10.694 16.373 Atomic orbital electron populations 1.22258 0.96221 1.00940 1.03746 1.20974 0.94984 0.82139 1.01024 1.57862 1.77727 1.23199 1.24461 1.19065 0.97575 0.90848 0.78860 1.21460 0.96308 1.32184 1.06786 0.91934 1.24923 0.96860 0.95921 0.96209 1.69901 1.29318 1.40518 1.13681 0.86609 0.83832 0.79574 0.77771 1.20135 1.21172 1.20017 1.01877 0.71535 0.73700 0.73017 1.93544 1.69161 1.76531 1.57770 1.93644 1.84600 1.29994 1.85589 1.59565 1.23835 1.34115 1.68523 1.21617 0.92091 0.89100 0.97438 1.23071 0.96477 1.00839 0.97149 1.22690 0.78866 0.92590 1.01885 0.85536 1.50414 1.18032 1.42127 1.05239 1.25968 0.90976 0.93358 0.93963 1.70577 1.16735 1.24413 1.15741 1.26047 0.98222 0.97437 0.89035 1.78156 1.02876 1.20629 1.12169 1.22248 0.84306 0.92429 1.01979 0.92833 0.92988 0.90188 0.92260 0.91008 0.94767 0.94664 0.92609 0.90887 0.90272 0.88621 0.89558 0.76703 0.76643 0.90786 0.88791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 9.84 37.15 0.37 -2.56 16 2 C 0.14 2.20 6.09 -4.04 -0.02 2.18 16 3 N -0.99 -19.37 2.86 -115.66 -0.33 -19.70 16 4 C 0.26 6.18 5.12 -5.19 -0.03 6.15 16 5 C -0.53 -14.29 8.41 -34.44 -0.29 -14.58 16 6 H 0.06 1.69 6.90 -52.49 -0.36 1.33 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -25.68 13.29 55.43 0.74 -24.95 16 9 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 13 S 2.79 52.61 6.26 -107.50 -0.67 51.94 16 14 O -0.99 -19.22 16.69 -57.17 -0.95 -20.17 16 15 O -0.95 -22.18 16.69 -57.17 -0.95 -23.14 16 16 N -1.02 -13.96 3.75 -111.29 -0.42 -14.38 16 17 C 0.12 1.16 6.99 -3.06 -0.02 1.14 16 18 C -0.14 -0.93 6.39 -24.89 -0.16 -1.09 16 19 C 0.14 1.44 4.21 -65.66 -0.28 1.17 16 20 H 0.13 1.29 8.14 -51.93 -0.42 0.87 16 21 N -0.37 -4.06 3.66 -53.91 -0.20 -4.25 16 22 C 0.25 2.47 11.76 -90.66 -1.07 1.40 16 23 N -0.55 -6.38 11.19 -15.83 -0.18 -6.56 16 24 C 0.20 2.20 13.03 -91.81 -1.20 1.00 16 25 N -0.31 -4.06 12.70 29.29 0.37 -3.68 16 26 C 0.12 1.51 6.68 -2.41 -0.02 1.50 16 27 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 1.54 6.59 -51.93 -0.34 1.20 16 30 H 0.06 0.81 7.61 -51.92 -0.40 0.41 16 31 H 0.07 1.08 8.00 -51.93 -0.42 0.67 16 32 H 0.03 0.88 7.61 -51.93 -0.40 0.48 16 33 H 0.04 0.86 8.00 -51.93 -0.42 0.44 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.09 0.44 6.45 -51.93 -0.33 0.10 16 39 H 0.22 1.20 7.03 -52.49 -0.37 0.83 16 40 H 0.22 1.64 8.06 -52.49 -0.42 1.22 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 LS Contribution 361.61 15.07 5.45 5.45 Total: -1.00 -35.45 361.61 -10.94 -46.40 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -5.97 Total: -1.44 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -2.81 Total: -2.02 kcal Atomic # 7 Polarization: -73.51 SS G_CDS: -0.01 Total: -73.52 kcal Atomic # 8 Polarization: -41.40 SS G_CDS: -1.91 Total: -43.31 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 52.61 SS G_CDS: -0.67 Total: 51.94 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.45 -10.94 -46.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619713633.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.453 kcal (2) G-P(sol) polarization free energy of solvation -35.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds