Wall clock time and date at job start Tue Mar 31 2020 06:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46500 * 120.00134 * 2 1 4 4 C 1.50697 * 109.46909 * 270.00080 * 3 2 1 5 5 H 1.07997 * 120.00410 * 359.97438 * 4 3 2 6 6 C 1.37883 * 120.00095 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99537 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00084 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47049 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47070 * 119.99412 * 8 6 4 11 11 H 1.48493 * 109.46793 * 239.99450 * 8 6 4 12 12 C 1.34785 * 120.00040 * 179.97438 * 2 1 3 13 13 O 1.21357 * 119.99781 * 180.70716 * 12 2 1 14 14 C 1.49343 * 119.99706 * 0.71291 * 12 2 1 15 15 O 1.21382 * 120.00139 * 355.57606 * 14 12 2 16 16 N 1.34770 * 119.99561 * 175.58189 * 14 12 2 17 17 C 1.39743 * 119.99696 * 185.32921 * 16 14 12 18 18 C 1.38824 * 120.10733 * 34.26569 * 17 16 14 19 19 C 1.38137 * 119.98763 * 179.97438 * 18 17 16 20 20 C 1.38339 * 120.20621 * 0.02562 * 19 18 17 21 21 C 1.38175 * 120.21374 * 359.97438 * 20 19 18 22 22 C 1.38699 * 120.01142 * 0.02562 * 21 20 19 23 23 N 1.40219 * 120.10181 * 179.97438 * 22 21 20 24 24 C 1.34701 * 126.84306 * 354.83367 * 23 22 21 25 25 N 1.30868 * 108.03325 * 179.83499 * 24 23 22 26 26 C 1.33238 * 109.84765 * 0.44168 * 25 24 23 27 27 N 1.30771 * 108.99635 * 359.72566 * 26 25 24 28 28 H 1.09008 * 109.47083 * 263.65823 * 1 2 3 29 29 H 1.09003 * 109.47068 * 23.65826 * 1 2 3 30 30 H 1.08997 * 109.47089 * 143.66519 * 1 2 3 31 31 H 1.08999 * 109.47199 * 30.00185 * 3 2 1 32 32 H 1.09005 * 109.47290 * 150.00189 * 3 2 1 33 33 H 0.97001 * 119.99640 * 180.02562 * 7 6 4 34 34 H 0.96997 * 120.00345 * 5.32115 * 16 14 12 35 35 H 1.07999 * 120.00469 * 0.02562 * 18 17 16 36 36 H 1.08007 * 119.89720 * 180.27851 * 19 18 17 37 37 H 1.08003 * 119.89225 * 180.02562 * 20 19 18 38 38 H 1.08007 * 119.99458 * 179.97438 * 21 20 19 39 39 H 1.07997 * 125.98077 * 359.97438 * 24 23 22 40 40 H 1.08002 * 125.51027 * 179.72542 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1269 2.8774 -1.6728 7 7 3.5542 3.6175 -0.6732 8 14 3.4388 3.4162 -3.4340 9 1 2.8617 2.4157 -4.3674 10 1 2.8017 4.7371 -3.6678 11 1 4.9014 3.5240 -3.6669 12 6 2.1389 -1.1673 0.0005 13 8 3.3524 -1.1672 0.0135 14 6 1.3922 -2.4605 -0.0150 15 8 0.1803 -2.4625 0.0530 16 7 2.0641 -3.6254 -0.1044 17 6 1.3636 -4.8280 -0.2312 18 6 0.1728 -4.8685 -0.9435 19 6 -0.5173 -6.0587 -1.0677 20 6 -0.0259 -7.2124 -0.4836 21 6 1.1586 -7.1817 0.2272 22 6 1.8588 -5.9915 0.3576 23 7 3.0607 -5.9581 1.0790 24 6 3.6108 -6.9687 1.7793 25 7 4.7301 -6.5371 2.3023 26 6 4.9230 -5.2617 1.9688 27 7 3.9278 -4.8622 1.2203 28 1 -0.3634 -0.1135 1.0215 29 1 -0.3633 0.9413 -0.4124 30 1 -0.3633 -0.8278 -0.6089 31 1 1.6084 2.0284 0.5139 32 1 3.1500 1.1384 0.5138 33 1 4.0311 4.4434 -0.8505 34 1 3.0337 -3.6291 -0.0809 35 1 -0.2137 -3.9698 -1.4011 36 1 -1.4414 -6.0895 -1.6260 37 1 -0.5693 -8.1403 -0.5843 38 1 1.5389 -8.0844 0.6822 39 1 3.2011 -7.9620 1.8881 40 1 5.7652 -4.6554 2.2681 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619832840.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:50 Heat of formation + Delta-G solvation = 86.467883 kcal Electronic energy + Delta-G solvation = -27529.793017 eV Core-core repulsion = 23541.315998 eV Total energy + Delta-G solvation = -3988.477019 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.63962 -40.86531 -39.36774 -37.83054 -35.66144 -34.63803 -34.21657 -32.59049 -31.66304 -30.38835 -29.47665 -28.05603 -26.24962 -24.80618 -24.44767 -23.49512 -22.09491 -21.77414 -21.12654 -19.49892 -18.66039 -17.62944 -17.17606 -16.65429 -16.24839 -16.06063 -15.81668 -15.49326 -15.17041 -15.11347 -14.81329 -14.35767 -14.33492 -14.10064 -13.75810 -13.20573 -13.12060 -12.53694 -12.41105 -12.35208 -12.12404 -12.02723 -11.80393 -11.31638 -11.16890 -10.98980 -10.75382 -10.64304 -10.48257 -10.39740 -10.22335 -10.18067 -9.67552 -9.01698 -8.81432 -8.50065 -8.25171 -7.79849 -6.11091 -4.16554 0.35843 0.84666 1.68968 1.86097 1.89339 2.63491 2.65960 3.27038 3.34310 3.35821 3.39014 3.73138 3.91823 3.97353 4.04519 4.39608 4.47564 4.54142 4.65900 4.76241 4.95218 5.03784 5.11036 5.23778 5.35983 5.69655 5.83044 5.92223 5.97851 6.01425 6.09644 6.11760 6.19654 6.37149 6.51225 6.69388 6.82078 7.22441 7.27838 7.37307 7.69768 7.81855 7.90603 8.11916 8.18482 8.62459 8.88585 9.48518 10.97175 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.015243 B = 0.003265 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.434640 B = 8575.010555 C = 9612.616023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.562 5.562 3 C 0.242 3.758 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.495 3.505 13 O -0.517 6.517 14 C 0.509 3.491 15 O -0.506 6.506 16 N -0.642 5.642 17 C 0.167 3.833 18 C -0.104 4.104 19 C -0.096 4.096 20 C -0.114 4.114 21 C -0.113 4.113 22 C 0.113 3.887 23 N -0.326 5.326 24 C 0.259 3.741 25 N -0.536 5.536 26 C 0.217 3.783 27 N -0.319 5.319 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.041 0.959 32 H 0.048 0.952 33 H 0.264 0.736 34 H 0.434 0.566 35 H 0.147 0.853 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.223 0.777 40 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.923 -23.784 2.455 24.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.293 5.293 3 C 0.123 3.877 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.728 3.272 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.208 1.208 12 C 0.275 3.725 13 O -0.394 6.394 14 C 0.293 3.707 15 O -0.380 6.380 16 N -0.294 5.294 17 C 0.068 3.932 18 C -0.125 4.125 19 C -0.116 4.116 20 C -0.134 4.134 21 C -0.134 4.134 22 C 0.018 3.982 23 N -0.109 5.109 24 C -0.036 4.036 25 N -0.262 5.262 26 C -0.085 4.085 27 N -0.145 5.145 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.280 0.720 35 H 0.165 0.835 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.239 0.761 40 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -6.797 -22.911 2.469 24.025 hybrid contribution 0.500 0.276 -0.861 1.033 sum -6.297 -22.635 1.608 23.549 Atomic orbital electron populations 1.22139 0.79595 1.03593 1.01660 1.48118 1.07574 1.06689 1.66962 1.19531 0.92779 0.77275 0.98107 1.21419 1.36921 1.06623 0.91924 0.92206 1.24937 0.95160 0.96239 0.97668 1.69941 1.38106 1.14305 1.30753 0.86394 0.78114 0.78378 0.84274 1.19752 1.20846 1.20782 1.19438 0.87617 0.84265 0.81178 1.90753 1.12834 1.86513 1.49330 1.21086 0.87769 0.85875 0.75962 1.90651 1.13778 1.87124 1.46493 1.43764 1.12951 1.03056 1.69627 1.17486 0.94375 0.84506 0.96806 1.21226 0.93856 0.99836 0.97547 1.21184 0.99870 0.91678 0.98837 1.20955 0.95260 0.99028 0.98144 1.20624 0.96076 0.94993 1.01705 1.17449 0.86507 0.95321 0.98958 1.47732 1.16866 1.09408 1.36940 1.26164 0.90465 0.95952 0.91010 1.70653 1.16658 1.11780 1.27120 1.26235 0.97451 0.91085 0.93698 1.77762 1.04294 1.07826 1.24584 0.93288 0.91060 0.89500 0.94129 0.93357 0.92615 0.72030 0.83524 0.84669 0.84574 0.84655 0.76114 0.75750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.34 9.43 59.84 0.56 1.90 16 2 N -0.56 -12.57 2.86 -183.51 -0.52 -13.10 16 3 C 0.24 6.34 5.14 -5.20 -0.03 6.31 16 4 C -0.53 -14.98 9.39 -34.44 -0.32 -15.30 16 5 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 8 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.49 10.88 7.74 -11.63 -0.09 10.79 16 13 O -0.52 -12.76 16.06 5.49 0.09 -12.68 16 14 C 0.51 9.36 7.49 -11.64 -0.09 9.27 16 15 O -0.51 -8.99 10.93 5.47 0.06 -8.93 16 16 N -0.64 -10.52 4.77 -10.19 -0.05 -10.57 16 17 C 0.17 2.27 6.27 -83.57 -0.52 1.74 16 18 C -0.10 -1.23 8.65 -39.40 -0.34 -1.57 16 19 C -0.10 -0.80 10.03 -39.58 -0.40 -1.20 16 20 C -0.11 -0.77 10.04 -39.57 -0.40 -1.16 16 21 C -0.11 -0.84 9.47 -39.43 -0.37 -1.22 16 22 C 0.11 1.28 6.71 -83.38 -0.56 0.72 16 23 N -0.33 -3.87 3.82 -11.68 -0.04 -3.92 16 24 C 0.26 2.43 11.98 -90.38 -1.08 1.34 16 25 N -0.54 -6.14 11.19 -15.75 -0.18 -6.31 16 26 C 0.22 2.61 13.03 -91.77 -1.20 1.42 16 27 N -0.32 -4.50 9.46 29.30 0.28 -4.23 16 28 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 29 H 0.07 1.27 8.02 -51.93 -0.42 0.85 16 30 H 0.09 1.51 5.54 -51.93 -0.29 1.22 16 31 H 0.04 1.07 8.07 -51.93 -0.42 0.65 16 32 H 0.05 1.40 7.41 -51.93 -0.38 1.01 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.43 7.44 5.63 -40.82 -0.23 7.21 16 35 H 0.15 1.89 6.49 -52.49 -0.34 1.55 16 36 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 37 H 0.14 0.49 8.06 -52.48 -0.42 0.07 16 38 H 0.14 0.54 6.83 -52.48 -0.36 0.18 16 39 H 0.22 0.92 7.13 -52.49 -0.37 0.55 16 40 H 0.23 2.01 8.06 -52.49 -0.42 1.58 16 LS Contribution 347.61 15.07 5.24 5.24 Total: -1.00 -34.99 347.61 -8.39 -43.38 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -4.05 Total: 5.20 kcal Atomic # 6 Polarization: 19.65 SS G_CDS: -4.93 Total: 14.72 kcal Atomic # 7 Polarization: -63.82 SS G_CDS: 0.22 Total: -63.60 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: 0.15 Total: -21.61 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.99 -8.39 -43.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619832840.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.846 kcal (2) G-P(sol) polarization free energy of solvation -34.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds