Wall clock time and date at job start Tue Mar 31 2020 04:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46504 * 109.47130 * 2 1 4 4 C 1.46496 * 119.99458 * 274.99810 * 3 2 1 5 5 C 1.52999 * 109.47285 * 275.00005 * 4 3 2 6 6 S 1.65599 * 120.00230 * 95.00046 * 3 2 1 7 7 O 1.42104 * 106.40174 * 336.45905 * 6 3 2 8 8 O 1.42097 * 106.40309 * 203.53800 * 6 3 2 9 9 C 1.76196 * 107.21887 * 89.99831 * 6 3 2 10 10 C 1.39812 * 126.06098 * 269.97447 * 9 6 3 11 11 C 1.37999 * 107.08384 * 179.79429 * 10 9 6 12 12 C 1.46542 * 126.24138 * 180.21962 * 11 10 9 13 13 O 1.21741 * 119.99863 * 185.66825 * 12 11 10 14 14 N 1.34774 * 119.99941 * 5.65848 * 12 11 10 15 15 C 1.36881 * 120.00194 * 185.19167 * 14 12 11 16 16 H 1.08008 * 119.99389 * 0.02562 * 15 14 12 17 17 C 1.39009 * 120.00131 * 180.02562 * 15 14 12 18 18 N 1.31394 * 120.00017 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99969 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47233 * 90.00021 * 19 17 15 21 21 H 1.48500 * 109.47112 * 210.00323 * 19 17 15 22 22 H 1.48504 * 109.46918 * 330.00160 * 19 17 15 23 23 N 1.37677 * 107.51889 * 0.36243 * 11 10 9 24 24 C 1.46496 * 125.68318 * 179.89632 * 23 11 10 25 25 C 1.35485 * 126.06332 * 89.99900 * 9 6 3 26 26 H 1.09002 * 109.47402 * 300.00206 * 1 2 3 27 27 H 1.08995 * 109.47206 * 59.99960 * 1 2 3 28 28 H 1.08998 * 109.47445 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47388 * 239.99257 * 2 1 3 30 30 H 1.09007 * 109.47035 * 119.99671 * 2 1 3 31 31 H 1.09001 * 109.47643 * 35.00392 * 4 3 2 32 32 H 1.09004 * 109.46692 * 155.00436 * 4 3 2 33 33 H 1.09000 * 109.47375 * 60.00010 * 5 4 3 34 34 H 1.09006 * 109.47196 * 180.02562 * 5 4 3 35 35 H 1.09007 * 109.46970 * 300.00030 * 5 4 3 36 36 H 1.07992 * 126.45709 * 0.02562 * 10 9 6 37 37 H 0.97002 * 120.00279 * 5.19698 * 14 12 11 38 38 H 0.96993 * 119.99793 * 179.97438 * 18 17 15 39 39 H 1.09005 * 109.47189 * 265.68792 * 24 23 11 40 40 H 1.09000 * 109.46981 * 145.68894 * 24 23 11 41 41 H 1.09003 * 109.47325 * 25.68871 * 24 23 11 42 42 H 1.07998 * 125.55477 * 359.96086 * 25 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1086 -1.2639 5 6 3.5151 1.7838 -1.8918 6 16 2.4122 2.1203 1.4286 7 8 1.6868 1.4416 2.4448 8 8 2.3057 3.5187 1.1997 9 6 4.1169 1.7941 1.7319 10 6 4.6333 0.7029 2.4370 11 6 6.0073 0.8316 2.4339 12 6 6.9651 -0.0889 3.0525 13 8 8.1505 0.1877 3.0706 14 7 6.5336 -1.2416 3.6017 15 6 7.4106 -2.0506 4.2724 16 1 8.4484 -1.7650 4.3619 17 6 6.9656 -3.2398 4.8384 18 7 5.7033 -3.5875 4.7290 19 14 8.1624 -4.3435 5.7543 20 1 8.1903 -3.9606 7.1888 21 1 7.7276 -5.7578 5.6278 22 1 9.5208 -4.1895 5.1744 23 7 6.3139 1.9844 1.7465 24 6 7.6628 2.5029 1.5064 25 6 5.1598 2.5566 1.3237 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.3617 1.8097 -1.9453 32 1 2.0922 3.1802 -1.0756 33 1 3.5812 0.7122 -2.0800 34 1 3.6194 2.3253 -2.8320 35 1 4.3117 2.0828 -1.2104 36 1 4.0644 -0.0930 2.8944 37 1 5.6015 -1.4980 3.5215 38 1 5.3929 -4.4174 5.1236 39 1 7.9177 3.2256 2.2817 40 1 7.6970 2.9889 0.5313 41 1 8.3775 1.6802 1.5276 42 1 5.0840 3.4710 0.7540 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701306905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:05 Heat of formation + Delta-G solvation = -66.964623 kcal Electronic energy + Delta-G solvation = -26861.381073 eV Core-core repulsion = 22969.401922 eV Total energy + Delta-G solvation = -3891.979151 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.03767 -37.80814 -37.17417 -37.03399 -35.59384 -34.23871 -32.79970 -32.02497 -31.38344 -29.15392 -28.83827 -26.53568 -25.17411 -23.79616 -22.30761 -21.93296 -21.09885 -19.19194 -18.52321 -18.20126 -17.42031 -17.13717 -16.36003 -15.51271 -15.34723 -15.28603 -14.67555 -14.54484 -14.18179 -14.09940 -13.91051 -13.52065 -13.48426 -13.22292 -12.96920 -12.72285 -12.43025 -12.24893 -12.15006 -12.10780 -11.89412 -11.85774 -11.82862 -11.73901 -11.69097 -11.19815 -11.06490 -10.98614 -10.73496 -10.49857 -10.37727 -9.70993 -9.21198 -8.91120 -8.67324 -8.20080 -8.00529 -6.60795 -3.97053 0.65962 1.90381 2.33019 2.95042 3.13162 3.18547 3.23916 3.27613 4.00661 4.05252 4.18837 4.47839 4.66182 4.77175 4.98115 5.01629 5.04881 5.05565 5.19177 5.26094 5.27683 5.31903 5.40503 5.48514 5.49966 5.64118 5.78260 5.80210 5.81896 5.86112 6.05103 6.06973 6.15452 6.19974 6.29541 6.61892 6.86276 7.10804 7.35292 7.38220 7.86922 8.40885 8.97042 9.32275 9.83753 10.55647 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.014344 B = 0.003815 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.527715 B = 7338.163186 C = 8445.431468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.120 3.880 3 N -0.998 5.998 4 C 0.113 3.887 5 C -0.177 4.177 6 S 2.719 3.281 7 O -0.957 6.957 8 O -0.972 6.972 9 C -0.746 4.746 10 C -0.090 4.090 11 C 0.000 4.000 12 C 0.489 3.511 13 O -0.606 6.606 14 N -0.529 5.529 15 C -0.300 4.300 16 H 0.108 0.892 17 C 0.027 3.973 18 N -0.884 5.884 19 Si 0.936 3.064 20 H -0.275 1.275 21 H -0.281 1.281 22 H -0.268 1.268 23 N -0.402 5.402 24 C 0.062 3.938 25 C 0.106 3.894 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.155 0.845 37 H 0.398 0.602 38 H 0.277 0.723 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.114 0.886 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.697 9.042 -13.317 17.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.005 4.005 3 N -0.836 5.836 4 C -0.013 4.013 5 C -0.236 4.236 6 S 2.810 3.190 7 O -0.947 6.947 8 O -0.963 6.963 9 C -0.842 4.842 10 C -0.115 4.115 11 C -0.113 4.113 12 C 0.277 3.723 13 O -0.495 6.495 14 N -0.162 5.162 15 C -0.430 4.430 16 H 0.126 0.874 17 C -0.177 4.177 18 N -0.523 5.523 19 Si 0.762 3.238 20 H -0.201 1.201 21 H -0.206 1.206 22 H -0.192 1.192 23 N -0.073 5.073 24 C -0.079 4.079 25 C -0.036 4.036 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.172 0.828 37 H 0.232 0.768 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.132 0.868 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -7.189 9.578 -12.725 17.474 hybrid contribution 0.704 -0.986 0.226 1.232 sum -6.485 8.592 -12.500 16.496 Atomic orbital electron populations 1.22213 0.96003 1.02463 1.02458 1.21229 0.94378 0.81220 1.03680 1.57643 1.79863 1.23934 1.22129 1.21311 0.97804 0.97043 0.85097 1.22270 0.97696 1.02565 1.01029 1.00970 0.73236 0.72749 0.72052 1.93565 1.70332 1.75390 1.55434 1.93510 1.87076 1.30259 1.85414 1.30698 1.22552 1.09127 1.21808 1.20901 0.92066 0.97901 1.00628 1.20880 0.94384 0.91430 1.04610 1.16435 0.86801 0.83286 0.85784 1.90595 1.16606 1.77101 1.65192 1.41613 1.12438 1.16712 1.45478 1.19780 0.93944 1.00261 1.28978 0.87396 1.25398 0.96840 0.97780 0.97698 1.69607 1.14380 1.24599 1.43755 0.85762 0.79979 0.78521 0.79501 1.20085 1.20633 1.19206 1.44174 1.06908 1.17869 1.38300 1.22380 0.81509 1.02400 1.01578 1.21543 0.83514 0.98325 1.00228 0.91796 0.92583 0.91415 0.90469 0.89514 0.90236 0.89091 0.92029 0.91658 0.92304 0.82768 0.76793 0.91253 0.90480 0.90370 0.86766 0.80603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 10.24 37.15 0.38 -1.25 16 2 C 0.12 1.25 6.07 -4.04 -0.02 1.22 16 3 N -1.00 -11.25 2.78 -114.38 -0.32 -11.57 16 4 C 0.11 1.00 6.40 -4.04 -0.03 0.97 16 5 C -0.18 -1.48 10.24 37.16 0.38 -1.10 16 6 S 2.72 39.90 5.79 -107.50 -0.62 39.27 16 7 O -0.96 -16.80 16.84 -57.17 -0.96 -17.77 16 8 O -0.97 -15.36 16.40 -57.17 -0.94 -16.30 16 9 C -0.75 -11.92 6.17 -39.98 -0.25 -12.17 16 10 C -0.09 -1.67 10.14 -39.08 -0.40 -2.06 16 11 C 0.00 0.01 6.88 -81.98 -0.56 -0.56 16 12 C 0.49 11.89 7.71 -12.91 -0.10 11.79 16 13 O -0.61 -15.94 14.23 5.15 0.07 -15.87 16 14 N -0.53 -13.48 5.25 -12.21 -0.06 -13.54 16 15 C -0.30 -8.13 9.67 -15.01 -0.15 -8.27 16 16 H 0.11 3.03 7.16 -52.48 -0.38 2.65 16 17 C 0.03 0.70 5.50 -17.45 -0.10 0.60 16 18 N -0.88 -23.26 13.05 55.50 0.72 -22.53 16 19 Si 0.94 20.19 29.55 -169.99 -5.02 15.17 16 20 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 21 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 23 N -0.40 -6.74 3.16 -120.22 -0.38 -7.12 16 24 C 0.06 0.86 10.65 59.84 0.64 1.50 16 25 C 0.11 1.55 10.32 -16.88 -0.17 1.38 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.65 8.11 -51.93 -0.42 0.23 16 30 H 0.09 0.99 7.61 -51.93 -0.40 0.60 16 31 H 0.08 0.55 8.11 -51.93 -0.42 0.13 16 32 H 0.09 0.81 6.91 -51.93 -0.36 0.46 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.55 7.31 -51.93 -0.38 0.17 16 36 H 0.15 2.81 7.49 -52.49 -0.39 2.41 16 37 H 0.40 9.74 6.85 -40.82 -0.28 9.46 16 38 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.11 1.88 6.20 -51.93 -0.32 1.55 16 42 H 0.18 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 367.50 15.07 5.54 5.54 Total: -1.00 -33.70 367.50 -8.21 -41.92 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -5.86 Total: 10.74 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -0.38 Total: -7.94 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -0.04 Total: -54.76 kcal Atomic # 8 Polarization: -48.10 SS G_CDS: -1.83 Total: -49.93 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: 39.90 SS G_CDS: -0.62 Total: 39.27 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.70 -8.21 -41.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701306905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.047 kcal (2) G-P(sol) polarization free energy of solvation -33.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds