Wall clock time and date at job start Tue Mar 31 2020 05:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86807 * 119.99796 * 2 1 4 4 H 1.48500 * 109.46978 * 239.99355 * 3 2 1 5 5 H 1.48492 * 109.47071 * 359.97438 * 3 2 1 6 6 H 1.48510 * 109.46749 * 119.99950 * 3 2 1 7 7 C 1.39935 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00134 * 197.16579 * 7 2 1 9 9 C 1.41434 * 119.99775 * 17.16156 * 7 2 1 10 10 C 1.40793 * 120.17523 * 204.98354 * 9 7 2 11 11 C 1.37714 * 120.03924 * 179.97438 * 10 9 7 12 12 C 1.38371 * 120.41037 * 0.04451 * 11 10 9 13 13 C 1.39878 * 120.36139 * 359.97438 * 12 11 10 14 14 C 1.47888 * 120.02856 * 180.02562 * 13 12 11 15 15 O 1.21546 * 120.00197 * 147.95845 * 14 13 12 16 16 N 1.34777 * 119.99582 * 327.95546 * 14 13 12 17 17 C 1.47153 * 120.98228 * 354.20366 * 16 14 13 18 18 C 1.53296 * 108.41438 * 230.53925 * 17 16 14 19 19 O 1.42957 * 109.22506 * 307.68117 * 18 17 16 20 20 C 1.42971 * 114.16729 * 62.57939 * 19 18 17 21 21 H 1.08996 * 109.50645 * 57.34326 * 20 19 18 22 22 C 1.50700 * 109.51150 * 177.49751 * 20 19 18 23 23 N 1.33316 * 126.55147 * 44.68481 * 22 20 19 24 24 N 1.29001 * 107.35313 * 179.83523 * 23 22 20 25 25 N 1.28784 * 108.72379 * 0.43582 * 24 23 22 26 26 H 0.97002 * 125.44768 * 179.72316 * 25 24 23 27 27 N 1.28882 * 109.10445 * 359.72542 * 25 24 23 28 28 C 1.47222 * 121.03056 * 174.22342 * 16 14 13 29 29 C 1.39037 * 119.94516 * 0.27441 * 13 12 11 30 30 H 0.97004 * 120.00330 * 0.02562 * 1 2 3 31 31 H 1.07999 * 119.97881 * 0.02562 * 10 9 7 32 32 H 1.07999 * 119.79535 * 180.02562 * 11 10 9 33 33 H 1.07999 * 119.81678 * 179.97438 * 12 11 10 34 34 H 1.09003 * 109.67945 * 110.80056 * 17 16 14 35 35 H 1.09003 * 109.68027 * 350.28557 * 17 16 14 36 36 H 1.09004 * 109.50980 * 67.60529 * 18 17 16 37 37 H 1.09003 * 109.50886 * 187.75689 * 18 17 16 38 38 H 1.09007 * 109.66683 * 9.74056 * 28 16 14 39 39 H 1.08997 * 109.67999 * 249.19558 * 28 16 14 40 40 H 1.08004 * 120.19805 * 179.70442 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6964 -1.2124 5 1 1.2772 2.7464 -0.0006 6 1 3.0959 1.6964 1.2126 7 6 2.0079 -1.2119 0.0005 8 1 3.0519 -1.2326 0.2766 9 6 1.3479 -2.4096 -0.3603 10 6 1.8205 -3.6484 0.1133 11 6 1.1755 -4.8129 -0.2394 12 6 0.0620 -4.7758 -1.0601 13 6 -0.4218 -3.5545 -1.5406 14 6 -1.6128 -3.5234 -2.4168 15 8 -2.3724 -2.5753 -2.3765 16 7 -1.8559 -4.5463 -3.2600 17 6 -0.8880 -5.6433 -3.4190 18 6 -0.6256 -5.8443 -4.9159 19 8 -1.8737 -5.9962 -5.5963 20 6 -2.7271 -4.8520 -5.5161 21 1 -2.2069 -3.9812 -5.9151 22 6 -3.9799 -5.1014 -6.3157 23 7 -4.7139 -6.2143 -6.3149 24 7 -5.6993 -6.0258 -7.1259 25 7 -5.5976 -4.8465 -7.6330 26 1 -6.2096 -4.4561 -8.2764 27 7 -4.5526 -4.2678 -7.1490 28 6 -3.0971 -4.6002 -4.0499 29 6 0.2210 -2.3702 -1.1981 30 1 -0.4851 0.8401 -0.0004 31 1 2.6889 -3.6853 0.7543 32 1 1.5411 -5.7609 0.1265 33 1 -0.4363 -5.6949 -1.3310 34 1 -1.2972 -6.5588 -2.9918 35 1 0.0435 -5.3870 -2.9141 36 1 -0.0978 -4.9771 -5.3127 37 1 -0.0199 -6.7386 -5.0624 38 1 -3.6286 -3.6525 -3.9630 39 1 -3.7287 -5.4106 -3.6863 40 1 -0.1462 -1.4253 -1.5707 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732090712.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:51 Heat of formation + Delta-G solvation = 88.326771 kcal Electronic energy + Delta-G solvation = -27484.892324 eV Core-core repulsion = 23496.495913 eV Total energy + Delta-G solvation = -3988.396411 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.74190 -40.23905 -38.38539 -37.01045 -34.79055 -34.48210 -33.89825 -33.68034 -31.34783 -30.04690 -29.54089 -27.84367 -25.76319 -24.92943 -24.79591 -23.30888 -22.33566 -21.19301 -20.91949 -19.39017 -19.00605 -17.70887 -17.40113 -16.44754 -16.36575 -15.89055 -15.74501 -15.43724 -15.02053 -14.73424 -14.52506 -14.24050 -13.85356 -13.33870 -13.18590 -12.79838 -12.69900 -12.54254 -12.46848 -11.96602 -11.75499 -11.61396 -11.53668 -11.31104 -11.17927 -11.13123 -10.91807 -10.75715 -10.67883 -10.50107 -10.15617 -10.12631 -9.72963 -9.27693 -9.03213 -8.38274 -7.67155 -7.55171 -6.83431 -4.46478 0.85700 1.73776 1.98829 2.19421 2.75583 3.04315 3.05807 3.08932 3.11790 3.21628 3.64367 3.87762 3.87933 4.27728 4.52737 4.60193 4.83346 4.93948 5.10565 5.20201 5.23691 5.35850 5.45564 5.52304 5.59969 5.78415 5.79448 5.95590 6.07629 6.14099 6.26446 6.58403 6.70262 6.87606 6.93119 6.97362 7.15212 7.32105 7.56665 7.69983 7.79707 7.91703 7.96615 8.10843 8.44119 8.72096 8.76106 8.78890 10.10585 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.018391 B = 0.002982 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.140349 B = 9388.990753 C =10369.578339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.102 3.898 10 C -0.212 4.212 11 C -0.095 4.095 12 C -0.230 4.230 13 C -0.122 4.122 14 C 0.571 3.429 15 O -0.537 6.537 16 N -0.619 5.619 17 C 0.057 3.943 18 C 0.048 3.952 19 O -0.368 6.368 20 C 0.179 3.821 21 H 0.096 0.904 22 C 0.186 3.814 23 N -0.250 5.250 24 N -0.054 5.054 25 N -0.229 5.229 26 H 0.475 0.525 27 N -0.286 5.286 28 C 0.094 3.906 29 C -0.097 4.097 30 H 0.286 0.714 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.131 0.869 36 H 0.061 0.939 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.392 -8.082 -12.764 16.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.147 4.147 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.488 4.488 8 H 0.099 0.901 9 C 0.099 3.901 10 C -0.231 4.231 11 C -0.114 4.114 12 C -0.250 4.250 13 C -0.125 4.125 14 C 0.363 3.637 15 O -0.413 6.413 16 N -0.354 5.354 17 C -0.065 4.065 18 C -0.029 4.029 19 O -0.286 6.286 20 C 0.117 3.883 21 H 0.113 0.887 22 C -0.098 4.098 23 N -0.123 5.123 24 N -0.050 5.050 25 N -0.075 5.075 26 H 0.329 0.671 27 N -0.138 5.138 28 C -0.031 4.031 29 C -0.117 4.117 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.121 0.879 34 H 0.093 0.907 35 H 0.149 0.851 36 H 0.079 0.921 37 H 0.131 0.869 38 H 0.122 0.878 39 H 0.097 0.903 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.527 -7.910 -12.974 16.538 hybrid contribution 0.267 1.373 -0.101 1.403 sum -6.260 -6.536 -13.075 15.902 Atomic orbital electron populations 1.69790 1.07503 1.29943 1.33212 1.25978 0.94785 1.01548 0.92381 0.86330 0.80109 0.80127 0.80008 1.18731 1.20219 1.18921 1.19569 0.97974 0.90958 1.40347 0.90072 1.17570 0.91115 0.92478 0.88906 1.21117 1.03516 0.92796 1.05711 1.20468 0.96075 0.96780 0.98053 1.20622 1.01233 0.95124 1.07972 1.19361 0.96053 0.95491 1.01640 1.19034 0.85832 0.80158 0.78685 1.90718 1.49144 1.33242 1.68234 1.48013 1.19770 1.24143 1.43494 1.23111 0.96254 0.90372 0.96770 1.23207 0.84720 1.03287 0.91664 1.87962 1.28956 1.36658 1.74995 1.20232 0.84767 0.90309 0.92962 0.88666 1.24948 0.99588 0.87609 0.97638 1.75952 1.00466 1.22181 1.13723 1.79009 1.17745 1.01220 1.06991 1.47813 1.18642 1.09683 1.31383 0.67053 1.74699 1.00444 1.25745 1.12951 1.22024 0.88104 1.04513 0.88452 1.21525 0.96910 0.95762 0.97547 0.90309 0.88595 0.88750 0.87916 0.90658 0.85139 0.92051 0.86918 0.87799 0.90256 0.85345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.33 10.97 55.55 0.61 -19.72 16 2 C 0.07 1.79 5.15 -17.35 -0.09 1.70 16 3 Si 0.91 18.29 29.59 -169.99 -5.03 13.26 16 4 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.46 -11.69 9.05 -37.73 -0.34 -12.03 16 8 H 0.08 1.95 7.90 -52.48 -0.41 1.54 16 9 C 0.10 2.59 5.56 -106.87 -0.59 2.00 16 10 C -0.21 -4.80 9.78 -38.81 -0.38 -5.18 16 11 C -0.10 -1.92 10.01 -39.72 -0.40 -2.32 16 12 C -0.23 -4.56 7.40 -38.92 -0.29 -4.85 16 13 C -0.12 -2.76 5.38 -105.04 -0.56 -3.32 16 14 C 0.57 12.17 7.43 -12.31 -0.09 12.08 16 15 O -0.54 -13.21 16.23 5.33 0.09 -13.12 16 16 N -0.62 -10.31 3.02 -173.31 -0.52 -10.83 16 17 C 0.06 0.77 4.88 -3.53 -0.02 0.75 16 18 C 0.05 0.55 6.98 37.31 0.26 0.81 16 19 O -0.37 -4.86 10.37 -35.23 -0.37 -5.22 16 20 C 0.18 2.38 3.33 -27.73 -0.09 2.29 16 21 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 22 C 0.19 2.42 7.26 -156.62 -1.14 1.28 16 23 N -0.25 -3.39 12.50 32.45 0.41 -2.99 16 24 N -0.05 -0.60 13.48 60.35 0.81 0.21 16 25 N -0.23 -1.92 7.91 60.34 0.48 -1.44 16 26 H 0.48 1.54 8.96 -340.52 -3.05 -1.51 16 27 N -0.29 -3.23 12.36 32.47 0.40 -2.83 16 28 C 0.09 1.39 5.93 -3.49 -0.02 1.37 16 29 C -0.10 -2.49 8.24 -38.44 -0.32 -2.80 16 30 H 0.29 6.88 8.30 -40.82 -0.34 6.54 16 31 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 32 H 0.09 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.10 1.74 5.62 -52.49 -0.30 1.44 16 34 H 0.08 0.92 7.92 -51.93 -0.41 0.51 16 35 H 0.13 1.87 4.54 -51.93 -0.24 1.63 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.10 1.67 7.07 -51.92 -0.37 1.30 16 39 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.13 3.56 6.09 -52.48 -0.32 3.24 16 LS Contribution 339.22 15.07 5.11 5.11 Total: -1.00 -31.83 339.22 -8.85 -40.69 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -6.77 Total: 5.11 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -4.07 Total: -8.22 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 2.18 Total: -37.59 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.28 Total: -18.35 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.83 -8.85 -40.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732090712.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.012 kcal (2) G-P(sol) polarization free energy of solvation -31.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds