Wall clock time and date at job start Tue Mar 31 2020 05:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86806 * 120.00188 * 2 1 4 4 H 1.48500 * 109.47231 * 274.34004 * 3 2 1 5 5 H 1.48499 * 109.47100 * 34.34333 * 3 2 1 6 6 H 1.48506 * 109.46974 * 154.33880 * 3 2 1 7 7 C 1.39934 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00491 * 163.62821 * 7 2 1 9 9 C 1.41444 * 119.99759 * 343.62315 * 7 2 1 10 10 C 1.40781 * 120.17584 * 336.49300 * 9 7 2 11 11 C 1.37709 * 120.04240 * 179.97438 * 10 9 7 12 12 C 1.38376 * 120.41019 * 359.97438 * 11 10 9 13 13 C 1.39877 * 120.35639 * 359.97438 * 12 11 10 14 14 C 1.47891 * 120.02529 * 180.02562 * 13 12 11 15 15 O 1.21551 * 119.99493 * 36.14914 * 14 13 12 16 16 N 1.34779 * 120.00193 * 216.14859 * 14 13 12 17 17 C 1.47149 * 120.97786 * 6.04815 * 16 14 13 18 18 C 1.53721 * 108.15827 * 129.43251 * 17 16 14 19 19 O 1.42962 * 109.14427 * 52.53981 * 18 17 16 20 20 C 1.42965 * 114.16362 * 297.28257 * 19 18 17 21 21 H 1.08998 * 109.55989 * 302.63701 * 20 19 18 22 22 C 1.50705 * 109.50949 * 182.50647 * 20 19 18 23 23 N 1.33311 * 126.55154 * 315.27962 * 22 20 19 24 24 N 1.29003 * 107.35603 * 180.02562 * 23 22 20 25 25 N 1.28783 * 108.72314 * 0.02562 * 24 23 22 26 26 H 0.97002 * 125.44923 * 180.02562 * 25 24 23 27 27 N 1.28879 * 109.10289 * 359.73362 * 25 24 23 28 28 C 1.47149 * 120.98131 * 186.33217 * 16 14 13 29 29 C 1.39031 * 119.95406 * 0.02777 * 13 12 11 30 30 H 0.97002 * 119.99602 * 0.02562 * 1 2 3 31 31 H 1.08000 * 119.98122 * 359.97438 * 10 9 7 32 32 H 1.08004 * 119.79653 * 179.97438 * 11 10 9 33 33 H 1.08002 * 119.82275 * 180.02562 * 12 11 10 34 34 H 1.08997 * 109.68255 * 249.21156 * 17 16 14 35 35 H 1.09004 * 109.68742 * 9.77094 * 17 16 14 36 36 H 1.08995 * 109.65997 * 292.57295 * 18 17 16 37 37 H 1.08998 * 109.44281 * 172.36777 * 18 17 16 38 38 H 1.09003 * 109.68240 * 350.23387 * 28 16 14 39 39 H 1.08996 * 109.68263 * 110.78666 * 28 16 14 40 40 H 1.07997 * 120.20453 * 180.25248 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3981 2.0994 -1.3961 5 1 1.4887 2.6245 0.7898 6 1 3.5828 1.4154 0.6063 7 6 2.0080 -1.2118 -0.0005 8 1 3.0551 -1.2308 -0.2642 9 6 1.3437 -2.4121 0.3443 10 6 0.1831 -2.3750 1.1402 11 6 -0.4617 -3.5452 1.4738 12 6 0.0235 -4.7631 1.0310 13 6 1.1747 -4.8195 0.2385 14 6 1.6865 -6.1251 -0.2313 15 8 0.9092 -7.0088 -0.5352 16 7 3.0147 -6.3351 -0.3224 17 6 3.9752 -5.3314 0.1629 18 6 4.9838 -6.0388 1.0823 19 8 5.5354 -7.1645 0.3949 20 6 4.5766 -8.1677 0.0514 21 1 4.0714 -8.5137 0.9531 22 6 5.2763 -9.3271 -0.6100 23 7 6.2131 -9.2543 -1.5557 24 7 6.5533 -10.4624 -1.8542 25 7 5.8645 -11.2763 -1.1319 26 1 5.9271 -12.2439 -1.1594 27 7 5.0830 -10.5994 -0.3624 28 6 3.5471 -7.5719 -0.9157 29 6 1.8376 -3.6473 -0.1073 30 1 -0.4850 0.8401 -0.0004 31 1 -0.2019 -1.4283 1.4893 32 1 -1.3516 -3.5122 2.0850 33 1 -0.4900 -5.6750 1.2980 34 1 4.4966 -4.8833 -0.6829 35 1 3.4476 -4.5580 0.7211 36 1 4.4803 -6.3762 1.9881 37 1 5.7828 -5.3458 1.3455 38 1 2.7358 -8.2829 -1.0720 39 1 4.0262 -7.3456 -1.8682 40 1 2.7244 -3.6859 -0.7224 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732090713.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:55 Heat of formation + Delta-G solvation = 83.150390 kcal Electronic energy + Delta-G solvation = -27399.224124 eV Core-core repulsion = 23410.603249 eV Total energy + Delta-G solvation = -3988.620876 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.75794 -40.26756 -38.42786 -37.08291 -34.76403 -34.49078 -33.91532 -33.73086 -31.31754 -30.01608 -29.74152 -27.82079 -25.47351 -25.17220 -24.81715 -23.34938 -22.37069 -21.15669 -20.88361 -19.41501 -19.25198 -17.57063 -17.40904 -16.56023 -16.33885 -15.91871 -15.68103 -15.48152 -15.12408 -14.79842 -14.52489 -14.26813 -13.88535 -13.37902 -13.23721 -12.83478 -12.82358 -12.59064 -12.24552 -12.06396 -11.69757 -11.61659 -11.53914 -11.32483 -11.23442 -11.17433 -11.01842 -10.74797 -10.67637 -10.55768 -10.31278 -10.19148 -9.62025 -9.29797 -9.20218 -8.43082 -7.67433 -7.57601 -6.87725 -4.51073 0.83979 1.72422 1.97107 2.17525 2.66164 3.01472 3.03300 3.05939 3.08751 3.19670 3.57541 3.83879 3.86459 4.26632 4.50516 4.57786 4.81436 4.91620 5.08826 5.20626 5.21765 5.32496 5.41989 5.51405 5.60143 5.76382 5.79548 6.03003 6.12105 6.12504 6.33394 6.56234 6.70695 6.85009 6.87909 6.95818 7.10310 7.26869 7.52960 7.67771 7.82459 7.87497 7.95232 8.03318 8.43794 8.60518 8.72283 8.75571 10.06192 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.020557 B = 0.002851 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.712442 B = 9818.813231 C =10725.614534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.460 4.460 8 H 0.080 0.920 9 C 0.101 3.899 10 C -0.139 4.139 11 C -0.113 4.113 12 C -0.180 4.180 13 C -0.113 4.113 14 C 0.573 3.427 15 O -0.549 6.549 16 N -0.615 5.615 17 C 0.061 3.939 18 C 0.049 3.951 19 O -0.367 6.367 20 C 0.180 3.820 21 H 0.095 0.905 22 C 0.186 3.814 23 N -0.249 5.249 24 N -0.054 5.054 25 N -0.229 5.229 26 H 0.475 0.525 27 N -0.287 5.287 28 C 0.093 3.907 29 C -0.199 4.199 30 H 0.282 0.718 31 H 0.126 0.874 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.128 0.872 36 H 0.061 0.939 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.882 -13.115 1.843 16.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.489 4.489 8 H 0.098 0.902 9 C 0.099 3.901 10 C -0.159 4.159 11 C -0.131 4.131 12 C -0.200 4.200 13 C -0.116 4.116 14 C 0.366 3.634 15 O -0.428 6.428 16 N -0.350 5.350 17 C -0.062 4.062 18 C -0.028 4.028 19 O -0.285 6.285 20 C 0.118 3.882 21 H 0.113 0.887 22 C -0.098 4.098 23 N -0.122 5.122 24 N -0.049 5.049 25 N -0.075 5.075 26 H 0.329 0.671 27 N -0.140 5.140 28 C -0.031 4.031 29 C -0.219 4.219 30 H 0.093 0.907 31 H 0.144 0.856 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.098 0.902 35 H 0.145 0.855 36 H 0.079 0.921 37 H 0.133 0.867 38 H 0.122 0.878 39 H 0.099 0.901 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.857 -13.645 1.228 16.877 hybrid contribution -0.178 0.372 0.190 0.453 sum 9.680 -13.273 1.418 16.489 Atomic orbital electron populations 1.69790 1.07623 1.29425 1.35012 1.25920 0.94760 1.01489 0.92148 0.86276 0.80689 0.80514 0.79164 1.19529 1.20031 1.18303 1.19563 0.97692 0.90835 1.40810 0.90160 1.17538 0.91621 0.91780 0.89201 1.21651 0.97950 0.97186 0.99087 1.20687 0.99017 0.92847 1.00597 1.20383 0.97569 0.96917 1.05164 1.19196 0.98313 0.90717 1.03338 1.19034 0.80431 0.88170 0.75782 1.90678 1.55839 1.45763 1.50482 1.47974 1.06061 1.18556 1.62418 1.23088 0.91235 0.92322 0.99522 1.23279 0.97953 0.87367 0.94162 1.87977 1.32787 1.30192 1.77521 1.20217 0.87435 0.83586 0.96993 0.88726 1.24951 0.97087 0.91417 0.96360 1.75965 1.11897 1.11491 1.12853 1.79022 1.15777 0.94968 1.15135 1.47812 1.23537 1.12874 1.23311 0.67063 1.74683 1.16876 1.05501 1.16904 1.22035 0.96915 0.88358 0.95832 1.21230 1.02652 0.91806 1.06195 0.90675 0.85606 0.88597 0.88486 0.90222 0.85463 0.92082 0.86736 0.87825 0.90100 0.87657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.28 10.80 55.55 0.60 -18.68 16 2 C 0.07 1.74 5.18 -17.35 -0.09 1.65 16 3 Si 0.91 17.42 29.59 -169.99 -5.03 12.39 16 4 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 5 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 6 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 7 C -0.46 -11.08 9.06 -37.73 -0.34 -11.42 16 8 H 0.08 1.82 7.90 -52.49 -0.41 1.41 16 9 C 0.10 2.44 5.59 -106.87 -0.60 1.85 16 10 C -0.14 -3.34 8.70 -38.81 -0.34 -3.68 16 11 C -0.11 -2.50 10.01 -39.72 -0.40 -2.89 16 12 C -0.18 -3.96 9.62 -38.92 -0.37 -4.34 16 13 C -0.11 -2.44 5.25 -105.04 -0.55 -2.99 16 14 C 0.57 11.57 7.38 -12.31 -0.09 11.48 16 15 O -0.55 -12.40 16.31 5.32 0.09 -12.32 16 16 N -0.62 -10.07 3.01 -173.11 -0.52 -10.59 16 17 C 0.06 0.86 4.97 -3.31 -0.02 0.84 16 18 C 0.05 0.58 7.00 37.53 0.26 0.84 16 19 O -0.37 -4.87 10.37 -35.23 -0.37 -5.23 16 20 C 0.18 2.32 3.33 -27.73 -0.09 2.23 16 21 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 22 C 0.19 2.36 7.26 -156.62 -1.14 1.22 16 23 N -0.25 -3.35 12.50 32.45 0.41 -2.95 16 24 N -0.05 -0.59 13.48 60.35 0.81 0.23 16 25 N -0.23 -1.85 7.91 60.34 0.48 -1.37 16 26 H 0.48 1.38 8.96 -340.52 -3.05 -1.67 16 27 N -0.29 -3.11 12.36 32.47 0.40 -2.71 16 28 C 0.09 1.35 5.92 -3.53 -0.02 1.32 16 29 C -0.20 -4.36 7.13 -38.44 -0.27 -4.63 16 30 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 31 H 0.13 3.12 6.01 -52.49 -0.32 2.80 16 32 H 0.10 1.88 8.06 -52.48 -0.42 1.46 16 33 H 0.10 2.05 8.01 -52.49 -0.42 1.63 16 34 H 0.08 1.08 7.97 -51.93 -0.41 0.66 16 35 H 0.13 1.98 4.81 -51.93 -0.25 1.73 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.10 1.57 7.06 -51.93 -0.37 1.21 16 39 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.11 2.12 6.12 -52.49 -0.32 1.80 16 LS Contribution 339.81 15.07 5.12 5.12 Total: -1.00 -30.52 339.81 -8.87 -39.39 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -6.80 Total: 5.24 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -4.06 Total: -8.52 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 2.18 Total: -36.07 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.28 Total: -17.55 kcal Atomic # 14 Polarization: 17.42 SS G_CDS: -5.03 Total: 12.39 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.52 -8.87 -39.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732090713.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.537 kcal (2) G-P(sol) polarization free energy of solvation -30.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds