Wall clock time and date at job start Tue Mar 31 2020 05:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86806 * 120.00188 * 2 1 4 4 H 1.48500 * 109.47231 * 274.34004 * 3 2 1 5 5 H 1.48499 * 109.47100 * 34.34333 * 3 2 1 6 6 H 1.48506 * 109.46974 * 154.33880 * 3 2 1 7 7 C 1.39934 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00491 * 163.62821 * 7 2 1 9 9 C 1.41444 * 119.99759 * 343.62315 * 7 2 1 10 10 C 1.40781 * 120.17584 * 336.49300 * 9 7 2 11 11 C 1.37709 * 120.04240 * 179.97438 * 10 9 7 12 12 C 1.38376 * 120.41019 * 359.97438 * 11 10 9 13 13 C 1.39877 * 120.35639 * 359.97438 * 12 11 10 14 14 C 1.47891 * 120.02529 * 180.02562 * 13 12 11 15 15 O 1.21551 * 119.99493 * 36.14914 * 14 13 12 16 16 N 1.34779 * 120.00193 * 216.14859 * 14 13 12 17 17 C 1.47149 * 120.97786 * 6.04815 * 16 14 13 18 18 C 1.53721 * 108.15827 * 129.43251 * 17 16 14 19 19 O 1.42962 * 109.14427 * 52.53981 * 18 17 16 20 20 C 1.42965 * 114.16362 * 297.28257 * 19 18 17 21 21 H 1.08998 * 109.55989 * 302.63701 * 20 19 18 22 22 C 1.50705 * 109.50949 * 182.50647 * 20 19 18 23 23 N 1.33311 * 126.55154 * 315.27962 * 22 20 19 24 24 N 1.29003 * 107.35603 * 180.02562 * 23 22 20 25 25 N 1.28783 * 108.72314 * 0.02562 * 24 23 22 26 26 H 0.97002 * 125.44923 * 180.02562 * 25 24 23 27 27 N 1.28879 * 109.10289 * 359.73362 * 25 24 23 28 28 C 1.47149 * 120.98131 * 186.33217 * 16 14 13 29 29 C 1.39031 * 119.95406 * 0.02777 * 13 12 11 30 30 H 0.97002 * 119.99602 * 0.02562 * 1 2 3 31 31 H 1.08000 * 119.98122 * 359.97438 * 10 9 7 32 32 H 1.08004 * 119.79653 * 179.97438 * 11 10 9 33 33 H 1.08002 * 119.82275 * 180.02562 * 12 11 10 34 34 H 1.08997 * 109.68255 * 249.21156 * 17 16 14 35 35 H 1.09004 * 109.68742 * 9.77094 * 17 16 14 36 36 H 1.08995 * 109.65997 * 292.57295 * 18 17 16 37 37 H 1.08998 * 109.44281 * 172.36777 * 18 17 16 38 38 H 1.09003 * 109.68240 * 350.23387 * 28 16 14 39 39 H 1.08996 * 109.68263 * 110.78666 * 28 16 14 40 40 H 1.07997 * 120.20453 * 180.25248 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3981 2.0994 -1.3961 5 1 1.4887 2.6245 0.7898 6 1 3.5828 1.4154 0.6063 7 6 2.0080 -1.2118 -0.0005 8 1 3.0551 -1.2308 -0.2642 9 6 1.3437 -2.4121 0.3443 10 6 0.1831 -2.3750 1.1402 11 6 -0.4617 -3.5452 1.4738 12 6 0.0235 -4.7631 1.0310 13 6 1.1747 -4.8195 0.2385 14 6 1.6865 -6.1251 -0.2313 15 8 0.9092 -7.0088 -0.5352 16 7 3.0147 -6.3351 -0.3224 17 6 3.9752 -5.3314 0.1629 18 6 4.9838 -6.0388 1.0823 19 8 5.5354 -7.1645 0.3949 20 6 4.5766 -8.1677 0.0514 21 1 4.0714 -8.5137 0.9531 22 6 5.2763 -9.3271 -0.6100 23 7 6.2131 -9.2543 -1.5557 24 7 6.5533 -10.4624 -1.8542 25 7 5.8645 -11.2763 -1.1319 26 1 5.9271 -12.2439 -1.1594 27 7 5.0830 -10.5994 -0.3624 28 6 3.5471 -7.5719 -0.9157 29 6 1.8376 -3.6473 -0.1073 30 1 -0.4850 0.8401 -0.0004 31 1 -0.2019 -1.4283 1.4893 32 1 -1.3516 -3.5122 2.0850 33 1 -0.4900 -5.6750 1.2980 34 1 4.4966 -4.8833 -0.6829 35 1 3.4476 -4.5580 0.7211 36 1 4.4803 -6.3762 1.9881 37 1 5.7828 -5.3458 1.3455 38 1 2.7358 -8.2829 -1.0720 39 1 4.0262 -7.3456 -1.8682 40 1 2.7244 -3.6859 -0.7224 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732090713.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:54 Heat of formation + Delta-G solvation = 62.579640 kcal Electronic energy + Delta-G solvation = -27400.116139 eV Core-core repulsion = 23410.603249 eV Total energy + Delta-G solvation = -3989.512891 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.61569 -41.62210 -39.77888 -38.76640 -36.03246 -35.52122 -35.45092 -34.79269 -32.49779 -31.78815 -31.26900 -29.02829 -27.22619 -26.34987 -25.68823 -24.62069 -23.58736 -22.60553 -22.42413 -20.77655 -20.23039 -19.10989 -18.32017 -17.97986 -17.54855 -17.20371 -17.08274 -16.75900 -16.57492 -16.28223 -15.91975 -15.44819 -15.08585 -14.98321 -14.64883 -14.31761 -14.24734 -13.78019 -13.63132 -13.39344 -13.08966 -12.95160 -12.80897 -12.63596 -12.48530 -12.40787 -12.21764 -12.21570 -11.98124 -11.95082 -11.61047 -11.39794 -11.31401 -11.02883 -10.81538 -9.75768 -9.44165 -9.33131 -8.61926 -6.33993 0.01018 0.45670 0.77241 0.94440 1.29358 1.45194 1.50922 1.59047 1.79005 1.94300 2.24180 2.26091 2.76116 2.91107 3.29933 3.50101 3.61232 3.69076 3.80406 3.98470 4.13343 4.21267 4.32433 4.40475 4.43697 4.47606 4.59507 4.60265 4.80246 4.91649 4.97206 5.05986 5.17020 5.28627 5.35800 5.54667 5.57771 5.81061 5.88867 6.01326 6.04439 6.21363 6.26488 6.63928 6.91727 6.95840 7.05414 7.08221 8.34326 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.020557 B = 0.002851 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.712442 B = 9818.813231 C =10725.614534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.035 3.965 3 Si 0.981 3.019 4 H -0.268 1.268 5 H -0.271 1.271 6 H -0.252 1.252 7 C -0.486 4.486 8 H 0.087 0.913 9 C 0.076 3.924 10 C -0.163 4.163 11 C -0.111 4.111 12 C -0.190 4.190 13 C -0.116 4.116 14 C 0.572 3.428 15 O -0.580 6.580 16 N -0.606 5.606 17 C 0.057 3.943 18 C 0.055 3.945 19 O -0.373 6.373 20 C 0.187 3.813 21 H 0.103 0.897 22 C 0.173 3.827 23 N -0.278 5.278 24 N -0.057 5.057 25 N -0.197 5.197 26 H 0.496 0.504 27 N -0.286 5.286 28 C 0.095 3.905 29 C -0.191 4.191 30 H 0.288 0.712 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.114 0.886 36 H 0.069 0.931 37 H 0.143 0.857 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.625 -13.685 2.049 18.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.193 1.193 5 H -0.196 1.196 6 H -0.176 1.176 7 C -0.515 4.515 8 H 0.105 0.895 9 C 0.074 3.926 10 C -0.183 4.183 11 C -0.130 4.130 12 C -0.210 4.210 13 C -0.119 4.119 14 C 0.364 3.636 15 O -0.461 6.461 16 N -0.339 5.339 17 C -0.065 4.065 18 C -0.022 4.022 19 O -0.291 6.291 20 C 0.125 3.875 21 H 0.120 0.880 22 C -0.110 4.110 23 N -0.151 5.151 24 N -0.052 5.052 25 N -0.049 5.049 26 H 0.355 0.645 27 N -0.140 5.140 28 C -0.029 4.029 29 C -0.211 4.211 30 H 0.099 0.901 31 H 0.131 0.869 32 H 0.135 0.865 33 H 0.123 0.877 34 H 0.106 0.894 35 H 0.132 0.868 36 H 0.087 0.913 37 H 0.160 0.840 38 H 0.113 0.887 39 H 0.102 0.898 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.647 -14.247 1.433 18.457 hybrid contribution -0.703 0.385 0.103 0.808 sum 10.944 -13.862 1.535 17.728 Atomic orbital electron populations 1.69853 1.09082 1.30621 1.35663 1.26754 0.95421 1.04622 0.91240 0.85203 0.79465 0.76060 0.79107 1.19286 1.19566 1.17556 1.19865 0.98219 0.91596 1.41862 0.89452 1.17867 0.92143 0.92834 0.89741 1.21630 0.98916 0.97274 1.00474 1.20889 0.99422 0.92305 1.00336 1.20577 0.97949 0.97126 1.05357 1.19415 0.98164 0.91549 1.02792 1.18806 0.81618 0.87298 0.75900 1.90658 1.56985 1.46283 1.52133 1.47959 1.05169 1.19594 1.61196 1.23210 0.91100 0.91928 1.00221 1.23375 0.98173 0.87256 0.93386 1.87989 1.32985 1.30446 1.77641 1.20085 0.87023 0.83673 0.96682 0.87960 1.24860 0.97557 0.91834 0.96799 1.75944 1.12778 1.12663 1.13697 1.78961 1.16023 0.94749 1.15436 1.47866 1.21739 1.13778 1.21504 0.64481 1.74651 1.17071 1.05037 1.17204 1.22108 0.97040 0.87292 0.96427 1.21338 1.02826 0.91196 1.05714 0.90096 0.86938 0.86474 0.87750 0.89375 0.86850 0.91309 0.83956 0.88663 0.89810 0.86222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -40.74 10.80 21.82 0.24 -40.51 16 2 C 0.03 1.61 5.18 85.25 0.44 2.06 16 3 Si 0.98 35.33 29.59 68.60 2.03 37.36 16 4 H -0.27 -9.49 7.11 99.48 0.71 -8.79 16 5 H -0.27 -9.48 7.11 99.48 0.71 -8.77 16 6 H -0.25 -8.71 7.11 99.48 0.71 -8.00 16 7 C -0.49 -23.60 9.06 23.47 0.21 -23.38 16 8 H 0.09 3.95 7.90 -2.91 -0.02 3.93 16 9 C 0.08 3.75 5.59 -21.32 -0.12 3.63 16 10 C -0.16 -8.01 8.70 22.77 0.20 -7.81 16 11 C -0.11 -4.95 10.01 22.18 0.22 -4.73 16 12 C -0.19 -8.38 9.62 22.70 0.22 -8.16 16 13 C -0.12 -5.03 5.25 -20.13 -0.11 -5.14 16 14 C 0.57 22.96 7.38 86.80 0.64 23.60 16 15 O -0.58 -26.21 16.31 -3.88 -0.06 -26.27 16 16 N -0.61 -19.32 3.01 -819.88 -2.47 -21.79 16 17 C 0.06 1.53 4.97 86.50 0.43 1.96 16 18 C 0.05 1.15 7.00 72.22 0.51 1.66 16 19 O -0.37 -9.11 10.37 -148.98 -1.54 -10.66 16 20 C 0.19 4.55 3.33 29.95 0.10 4.65 16 21 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 22 C 0.17 4.12 7.26 138.55 1.01 5.13 16 23 N -0.28 -7.09 12.50 -51.26 -0.64 -7.73 16 24 N -0.06 -1.14 13.48 37.02 0.50 -0.64 16 25 N -0.20 -2.74 7.91 37.00 0.29 -2.44 16 26 H 0.50 1.58 8.96 -347.67 -3.12 -1.54 16 27 N -0.29 -5.63 12.36 -51.20 -0.63 -6.26 16 28 C 0.10 2.66 5.92 86.35 0.51 3.18 16 29 C -0.19 -8.39 7.13 23.01 0.16 -8.22 16 30 H 0.29 12.91 8.30 -92.71 -0.77 12.14 16 31 H 0.11 5.76 6.01 -2.91 -0.02 5.74 16 32 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 33 H 0.10 4.40 8.01 -2.91 -0.02 4.37 16 34 H 0.09 2.24 7.97 -2.39 -0.02 2.22 16 35 H 0.11 3.42 4.81 -2.39 -0.01 3.41 16 36 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.14 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.10 2.85 7.06 -2.39 -0.02 2.83 16 39 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.12 4.78 6.12 -2.91 -0.02 4.77 16 Total: -1.00 -65.63 339.81 0.13 -65.50 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: -1.99 Total: 25.04 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: 4.42 Total: -11.59 kcal Atomic # 7 Polarization: -76.66 SS G_CDS: -2.72 Total: -79.38 kcal Atomic # 8 Polarization: -35.32 SS G_CDS: -1.61 Total: -36.92 kcal Atomic # 14 Polarization: 35.33 SS G_CDS: 2.03 Total: 37.36 kcal Total: -65.63 0.13 -65.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732090713.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.076 kcal (2) G-P(sol) polarization free energy of solvation -65.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds